Cow genome map
| Conread name: | Thy1-THY010121F06 |
| Conread position: | 88-385 |
| Cow position: | chr29:6286110-6286393 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 89-285 |
| Cow position: | chr29:36220584-36220387 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 75, 139 |
| Conread position: | 89-309 |
| Cow position: | chr29:17297186-17296967 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 89-361 |
| Cow position: | chr29:26653994-26654252 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 38, 79 |
| Conread position: | 89-366 |
| Cow position: | chr29:31489369-31489103 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 89-380 |
| Cow position: | chr29:868825-868542 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 89-400 |
| Cow position: | chr29:18735589-18735893 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 70 |
| Conread position: | 89-407 |
| Cow position: | chr29:17222463-17222151 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 220 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 89-415 |
| Cow position: | chr29:41530900-41530585 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 226 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 201, 170 |
| Conread position: | 89-416 |
| Cow position: | chr29:40298970-40299279 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 311, 74 |
| Conread position: | 89-417 |
| Cow position: | chr29:22068690-22069014 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 231 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 75, 201 |
| Conread position: | 89-422 |
| Cow position: | chr29:7966296-7965981 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 61, 96 |
| Conread position: | 89-428 |
| Cow position: | chr29:14501643-14501316 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 86 |
| Conread position: | 89-473 |
| Cow position: | chr29:465349-465722 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 76 |
| Conread position: | 89-473 |
| Cow position: | chr29:1022346-1021946 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 70 |
| Conread position: | 89-473 |
| Cow position: | chr29:2744217-2744595 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 173 |
| Conread position: | 89-473 |
| Cow position: | chr29:21196599-21196973 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 79 |
| Conread position: | 89-473 |
| Cow position: | chr29:21443288-21443667 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 88 |
| Conread position: | 89-473 |
| Cow position: | chr29:23874510-23874134 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 77 |
| Conread position: | 89-473 |
| Cow position: | chr29:34745608-34745977 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 48 |
| Conread position: | 91-473 |
| Cow position: | chr29:9638272-9638635 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 92-312 |
| Cow position: | chr29:10018626-10018407 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 64, 69 |
| Conread position: | 92-347 |
| Cow position: | chr29:26270115-26269869 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 74, 87 |
| Conread position: | 92-367 |
| Cow position: | chr29:35677496-35677762 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 64, 97 |
| Conread position: | 92-392 |
| Cow position: | chr29:25474970-25474665 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 92 |
| Conread position: | 92-406 |
| Cow position: | chr29:34297521-34297821 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 115, 107 |
| Conread position: | 92-472 |
| Cow position: | chr29:31926242-31926612 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 92-473 |
| Cow position: | chr29:3704151-3704522 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 118 |
| Conread position: | 92-473 |
| Cow position: | chr29:4120901-4120529 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 220 |
| Conread position: | 92-473 |
| Cow position: | chr29:26017455-26017834 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 84 |
| Conread position: | 95-347 |
| Cow position: | chr29:11434163-11433924 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 95-473 |
| Cow position: | chr29:86967-87336 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 84 |
| Conread position: | 95-473 |
| Cow position: | chr29:19428703-19428350 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 96-314 |
| Cow position: | chr29:29942684-29942902 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 59, 82 |
| Conread position: | 96-333 |
| Cow position: | chr29:20910649-20910885 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 34, 45 |
| Conread position: | 97-447 |
| Cow position: | chr29:17065-17401 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 112 |
| Conread position: | 97-473 |
| Cow position: | chr29:19792234-19792590 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 261 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 59, 64 |
| Conread position: | 98-365 |
| Cow position: | chr29:14484496-14484761 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 77, 170 |
| Conread position: | 100-469 |
| Cow position: | chr29:32521913-32521544 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 258 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 63, 122 |
| Conread position: | 101-347 |
| Cow position: | chr29:44384155-44384399 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 86, 94 |
| Conread position: | 112-473 |
| Cow position: | chr29:12004735-12005087 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 52 |
| Conread position: | 112-473 |
| Cow position: | chr29:28868666-28868308 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 92 |
| Conread position: | 123-452 |
| Cow position: | chr29:26735045-26734731 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 163-469 |
| Cow position: | chr29:2414835-2415126 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 100 |
| Conread position: | 164-462 |
| Cow position: | chr29:44310047-44310340 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 211 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 16, 152 |
| Conread position: | 178-383 |
| Cow position: | chr29:19253856-19254056 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 178-410 |
| Cow position: | chr29:19389451-19389226 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 178-473 |
| Cow position: | chr29:36037665-36037389 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 180-473 |
| Cow position: | chr29:961886-961597 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 186-347 |
| Cow position: | chr29:3100301-3100460 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 186-464 |
| Cow position: | chr29:8163902-8164176 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 75 |
| Conread position: | 190-345 |
| Cow position: | chr29:26508445-26508290 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 47, 136 |
| Conread position: | 195-414 |
| Cow position: | chr29:5919375-5919589 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 217-417 |
| Cow position: | chr29:21933187-21933380 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 253-393 |
| Cow position: | chr29:23577884-23578019 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 63, 0 |
Show alignments to all cow chromosomes.