Cow genome map

Conread name: Thy1-THY010121F06

Conread position: 83-473
Cow position: chr4:20139464-20139857 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 276
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 93, 83

Conread position: 88-409
Cow position: chr4:46060988-46060681 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 229
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 75, 0

Conread position: 88-469
Cow position: chr4:12591168-12591535 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 87

Conread position: 89-299
Cow position: chr4:65950700-65950488 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 149
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 174, 87

Conread position: 89-304
Cow position: chr4:66547723-66547932 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 148
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 75, 0

Conread position: 89-308
Cow position: chr4:2885495-2885713 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 151
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 60, 90

Conread position: 89-308
Cow position: chr4:34369405-34369622 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 157
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 153, 0

Conread position: 89-321
Cow position: chr4:31505979-31506214 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 164
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 77, 159

Conread position: 89-323
Cow position: chr4:48143883-48143645 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 166
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 76, 205

Conread position: 89-345
Cow position: chr4:29106952-29106697 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 173
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 85, 0

Conread position: 89-346
Cow position: chr4:13973925-13974175 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 179
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 59, 86

Conread position: 89-366
Cow position: chr4:16762681-16762954 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 196
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 65, 90

Conread position: 89-386
Cow position: chr4:65432195-65431903 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 210
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 208, 163

Conread position: 89-387
Cow position: chr4:12127594-12127886 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 213
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 114, 78

Conread position: 89-401
Cow position: chr4:45367784-45367479 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 218
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 76, 89

Conread position: 89-406
Cow position: chr4:32726269-32725962 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 0

Conread position: 89-406
Cow position: chr4:37691267-37691570 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 219
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 75, 99

Conread position: 89-409
Cow position: chr4:27665058-27664740 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 71

Conread position: 89-412
Cow position: chr4:50203799-50203479 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 218
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 61, 90

Conread position: 89-416
Cow position: chr4:5460816-5461125 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 237
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 75, 142

Conread position: 89-416
Cow position: chr4:21874847-21874562 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 223
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 61, 0

Conread position: 89-420
Cow position: chr4:203098-203424 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 227
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 300, 75

Conread position: 89-428
Cow position: chr4:18095629-18095960 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 40

Conread position: 89-432
Cow position: chr4:37343172-37342829 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 152

Conread position: 89-442
Cow position: chr4:45775293-45775639 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 94

Conread position: 89-454
Cow position: chr4:43148456-43148094 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 144

Conread position: 89-463
Cow position: chr4:19008091-19007721 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 258
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 77, 93

Conread position: 89-464
Cow position: chr4:66256731-66256366 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 77

Conread position: 89-467
Cow position: chr4:37935240-37935604 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 0

Conread position: 89-468
Cow position: chr4:20957-20603 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 265
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 77, 0

Conread position: 89-469
Cow position: chr4:17832856-17833230 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 144

Conread position: 89-469
Cow position: chr4:25197450-25197822 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 0

Conread position: 89-469
Cow position: chr4:44782419-44782049 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 0

Conread position: 89-471
Cow position: chr4:25806944-25806572 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 22

Conread position: 89-472
Cow position: chr4:12004259-12003895 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 89-472
Cow position: chr4:67445190-67444817 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 0

Conread position: 89-473
Cow position: chr4:13590128-13589765 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 271
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 16, 27

Conread position: 89-473
Cow position: chr4:15905145-15904772 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 110

Conread position: 89-473
Cow position: chr4:40414583-40414960 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 95

Conread position: 89-473
Cow position: chr4:42673221-42672842 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 75

Conread position: 89-473
Cow position: chr4:51903650-51903272 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 84

Conread position: 89-478
Cow position: chr4:28836581-28836198 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 106

Conread position: 89-486
Cow position: chr4:34208982-34208587 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 78

Conread position: 90-370
Cow position: chr4:41602893-41602622 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 197
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 74, 105

Conread position: 92-332
Cow position: chr4:4843202-4843440 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 165
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 87, 71

Conread position: 92-347
Cow position: chr4:13284426-13284172 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 186
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 130, 161

Conread position: 92-406
Cow position: chr4:23445004-23445313 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 87

Conread position: 92-416
Cow position: chr4:4084408-4084718 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 224
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 84, 0

Conread position: 92-417
Cow position: chr4:21371433-21371127 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 225
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 74, 92

Conread position: 92-417
Cow position: chr4:59785364-59785043 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 83

Conread position: 92-454
Cow position: chr4:60370784-60371142 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 21

Conread position: 92-469
Cow position: chr4:36893401-36893031 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 105

Conread position: 92-473
Cow position: chr4:22138180-22138563 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 175

Conread position: 92-473
Cow position: chr4:43865815-43866176 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 43

Conread position: 92-473
Cow position: chr4:56239818-56240175 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 263
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 329, 71

Conread position: 92-489
Cow position: chr4:23564057-23563654 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 257
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 48, 265

Conread position: 95-340
Cow position: chr4:65175106-65175341 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 169
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 240, 78

Conread position: 95-403
Cow position: chr4:35939968-35940270 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 95-406
Cow position: chr4:55395802-55395506 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 223
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 69, 89

Conread position: 95-424
Cow position: chr4:17052554-17052876 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 233
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 73, 166

Conread position: 95-465
Cow position: chr4:22236445-22236799 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 30

Conread position: 95-469
Cow position: chr4:508870-509223 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 0

Conread position: 95-473
Cow position: chr4:22101226-22101594 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 266
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 215, 71

Conread position: 98-473
Cow position: chr4:37619852-37620216 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 69

Conread position: 100-284
Cow position: chr4:18756468-18756288 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 132
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 64, 94

Conread position: 102-416
Cow position: chr4:52748422-52748730 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 160

Conread position: 106-473
Cow position: chr4:21058348-21058719 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 148

Conread position: 111-446
Cow position: chr4:49424849-49424542 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 240
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 20, 0

Conread position: 112-346
Cow position: chr4:36929338-36929110 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 172
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 51, 0

Conread position: 112-416
Cow position: chr4:17660165-17660477 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 218
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 64, 244

Conread position: 115-401
Cow position: chr4:45583100-45583385 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 61

Conread position: 115-405
Cow position: chr4:51867015-51866733 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 210
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 63, 51

Conread position: 115-473
Cow position: chr4:58822896-58823249 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 226
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 227, 61

Conread position: 115-473
Cow position: chr4:59871498-59871176 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 260
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 75, 50

Conread position: 116-473
Cow position: chr4:14920012-14919681 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 248
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 339, 60

Conread position: 129-399
Cow position: chr4:49089796-49089539 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 196
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 49, 132

Conread position: 163-478
Cow position: chr4:39009937-39009635 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 20

Conread position: 171-468
Cow position: chr4:34171607-34171893 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 177-385
Cow position: chr4:11004763-11004957 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 150
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 9, 0

Conread position: 177-416
Cow position: chr4:57147275-57147038 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 175
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 171, 10

Conread position: 178-381
Cow position: chr4:23911626-23911826 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 158
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 12, 0

Conread position: 180-354
Cow position: chr4:29238082-29238254 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 128
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 7, 0

Conread position: 182-473
Cow position: chr4:55270804-55271086 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 21

Conread position: 186-473
Cow position: chr4:68944221-68944505 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 0

Conread position: 195-468
Cow position: chr4:26163032-26163297 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 197
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 216, 92

Conread position: 197-348
Cow position: chr4:6413247-6413396 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 113
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 10, 46

Conread position: 200-406
Cow position: chr4:36396187-36396386 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 153
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 95, 49

Conread position: 219-473
Cow position: chr4:9795454-9795700 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 186
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 80, 0

Conread position: 223-366
Cow position: chr4:61869926-61870064 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 108
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 80, 0

Conread position: 247-441
Cow position: chr4:10703789-10703982 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 154
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 100, 0

Conread position: 247-474
Cow position: chr4:1404937-1404710 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 167
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 172, 100

Show alignments to all cow chromosomes.