Cow genome map

Conread name: Thy1-THY010121F06

Conread position: 33-469
Cow position: chr6:31526198-31525774 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 300
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 31, 46

Conread position: 88-366
Cow position: chr6:59104692-59104433 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 186
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 75, 0

Conread position: 88-393
Cow position: chr6:528191-528478 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 203
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 94, 0

Conread position: 88-422
Cow position: chr6:34475468-34475774 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 236
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 40, 0

Conread position: 89-246
Cow position: chr6:2585034-2584882 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 77, 0

Conread position: 89-298
Cow position: chr6:10039815-10039609 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 142
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 97, 0

Conread position: 89-302
Cow position: chr6:21514516-21514735 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 154
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 79, 95

Conread position: 89-309
Cow position: chr6:36189789-36189574 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 155
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 26, 0

Conread position: 89-312
Cow position: chr6:582181-582397 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 156
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 17, 0

Conread position: 89-312
Cow position: chr6:23401901-23402115 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 154
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 12, 0

Conread position: 89-325
Cow position: chr6:60118242-60118011 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 172
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 77, 0

Conread position: 89-329
Cow position: chr6:38610060-38609825 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 167
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 165, 87

Conread position: 89-329
Cow position: chr6:47833029-47833257 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 163
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 75, 99

Conread position: 89-346
Cow position: chr6:60740106-60739859 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 187
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 76, 0

Conread position: 89-365
Cow position: chr6:35993676-35993403 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 192
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 166, 87

Conread position: 89-379
Cow position: chr6:47799385-47799110 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 198
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 94, 0

Conread position: 89-386
Cow position: chr6:12091901-12092179 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 203
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 98, 0

Conread position: 89-388
Cow position: chr6:8787945-8788234 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 218
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 147, 104

Conread position: 89-391
Cow position: chr6:67456810-67456503 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 227
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 133, 77

Conread position: 89-396
Cow position: chr6:20157425-20157120 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 77

Conread position: 89-398
Cow position: chr6:31261086-31260780 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 214
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 146, 87

Conread position: 89-403
Cow position: chr6:57405033-57405336 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 221
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 174, 76

Conread position: 89-413
Cow position: chr6:38207398-38207717 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 61

Conread position: 89-417
Cow position: chr6:66434041-66433722 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 223
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 143, 14

Conread position: 89-463
Cow position: chr6:4864455-4864810 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 0

Conread position: 89-473
Cow position: chr6:10176210-10176580 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 74

Conread position: 89-473
Cow position: chr6:13367377-13367019 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 262
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 127, 0

Conread position: 89-473
Cow position: chr6:15937763-15938146 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 68

Conread position: 89-473
Cow position: chr6:16700353-16699980 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 71

Conread position: 89-473
Cow position: chr6:18048932-18049307 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 77

Conread position: 89-473
Cow position: chr6:35181165-35181534 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 60

Conread position: 89-473
Cow position: chr6:35726186-35725810 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 248
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 104, 83

Conread position: 89-473
Cow position: chr6:60057563-60057947 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 287, 77

Conread position: 89-473
Cow position: chr6:61631517-61631895 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 259, 85

Conread position: 89-484
Cow position: chr6:6060480-6060850 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 0

Conread position: 89-490
Cow position: chr6:48567260-48567640 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 64

Conread position: 91-469
Cow position: chr6:11169788-11169430 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 24

Conread position: 92-315
Cow position: chr6:60667502-60667292 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 154
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 73, 0

Conread position: 92-408
Cow position: chr6:4468857-4468530 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 240
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 72, 68

Conread position: 92-432
Cow position: chr6:61113856-61113509 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 36

Conread position: 92-473
Cow position: chr6:6343515-6343146 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 73

Conread position: 92-473
Cow position: chr6:47305430-47305046 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 270
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 72, 122

Conread position: 93-416
Cow position: chr6:46865504-46865824 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 229
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 161, 65

Conread position: 94-423
Cow position: chr6:50984309-50983976 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 254, 70

Conread position: 95-306
Cow position: chr6:44127697-44127486 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 145
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 69, 170

Conread position: 95-308
Cow position: chr6:16266810-16266597 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 144
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 87, 71

Conread position: 95-308
Cow position: chr6:43134853-43135066 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 152
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 143, 79

Conread position: 95-345
Cow position: chr6:67323395-67323161 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 175
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 71, 0

Conread position: 95-387
Cow position: chr6:16191764-16191471 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 212
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 71, 236

Conread position: 95-417
Cow position: chr6:37149275-37148973 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 95-464
Cow position: chr6:60474216-60473861 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 69

Conread position: 95-473
Cow position: chr6:28148342-28147969 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 260
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 49, 180

Conread position: 95-473
Cow position: chr6:32126142-32125785 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 95-473
Cow position: chr6:48170024-48169663 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 68

Conread position: 96-318
Cow position: chr6:53841421-53841631 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 155
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 67, 0

Conread position: 96-342
Cow position: chr6:4691890-4692136 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 182
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 73, 162

Conread position: 96-363
Cow position: chr6:17333968-17334229 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 187
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 60, 65

Conread position: 96-464
Cow position: chr6:50747083-50746704 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 260

Conread position: 96-473
Cow position: chr6:44099171-44098806 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 16

Conread position: 97-347
Cow position: chr6:31854437-31854195 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 163
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 69, 0

Conread position: 97-473
Cow position: chr6:25407308-25407688 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 70

Conread position: 98-347
Cow position: chr6:26450395-26450160 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 178
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 10, 0

Conread position: 99-473
Cow position: chr6:12338075-12337703 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 220

Conread position: 101-347
Cow position: chr6:19013151-19012912 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 173
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 63, 161

Conread position: 112-403
Cow position: chr6:59069555-59069840 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 204
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 52, 63

Conread position: 112-469
Cow position: chr6:28483084-28482737 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 52

Conread position: 113-398
Cow position: chr6:61137443-61137158 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 206
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 256, 70

Conread position: 115-312
Cow position: chr6:57299081-57298890 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 147
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 50, 0

Conread position: 115-400
Cow position: chr6:47989238-47988981 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 203
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 51, 0

Conread position: 115-414
Cow position: chr6:5445689-5445406 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 202
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 49, 102

Conread position: 115-416
Cow position: chr6:60239329-60239613 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 217
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 51, 0

Conread position: 115-473
Cow position: chr6:28148901-28148564 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 240
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 297, 61

Conread position: 115-473
Cow position: chr6:36928727-36928371 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 149

Conread position: 115-482
Cow position: chr6:38771351-38771007 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 250
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 322, 61

Conread position: 118-406
Cow position: chr6:60442477-60442204 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 211
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 53, 0

Conread position: 130-393
Cow position: chr6:52025599-52025857 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 191
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 35, 54

Conread position: 134-406
Cow position: chr6:48344380-48344113 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 34

Conread position: 144-411
Cow position: chr6:1907580-1907319 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 185
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 242, 93

Conread position: 177-416
Cow position: chr6:14201706-14201473 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 177
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 6, 0

Conread position: 178-386
Cow position: chr6:33277048-33276844 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 160
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 85, 0

Conread position: 178-405
Cow position: chr6:65702398-65702615 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 169
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 108, 8

Conread position: 180-424
Cow position: chr6:54884907-54885146 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 183
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 128, 0

Conread position: 183-432
Cow position: chr6:7103229-7103476 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 164

Conread position: 187-474
Cow position: chr6:10605684-10605401 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 55

Conread position: 188-473
Cow position: chr6:3978667-3978943 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 207
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 131, 99

Conread position: 190-386
Cow position: chr6:48187586-48187776 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 142
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 113, 0

Conread position: 190-405
Cow position: chr6:59620662-59620455 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 156
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 36, 0

Conread position: 217-399
Cow position: chr6:7989443-7989621 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 146
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 130, 0

Conread position: 217-403
Cow position: chr6:2896722-2896539 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 143
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 97, 0

Conread position: 218-428
Cow position: chr6:61978209-61978418 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 160
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 43, 54

Conread position: 222-392
Cow position: chr6:46245356-46245524 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 44, 82

Conread position: 239-377
Cow position: chr6:6226970-6226838 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 47, 0

Conread position: 247-428
Cow position: chr6:66087893-66087718 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 142
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 73, 0

Conread position: 247-440
Cow position: chr6:65676197-65676008 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 158
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 42, 0

Conread position: 247-473
Cow position: chr6:65711767-65711545 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 0

Show alignments to all cow chromosomes.