Cow genome map

Conread name: Thy1-THY010121F06

Conread position: 88-312
Cow position: chr9:11123509-11123293 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 158
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 100, 78

Conread position: 88-468
Cow position: chr9:23269005-23269372 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 245
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 100, 74

Conread position: 88-473
Cow position: chr9:16300593-16300217 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 272
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 76, 109

Conread position: 88-473
Cow position: chr9:35375400-35375772 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 79

Conread position: 89-285
Cow position: chr9:35105813-35105613 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 147
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 173, 78

Conread position: 89-299
Cow position: chr9:8901250-8901042 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 150
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 90, 172

Conread position: 89-318
Cow position: chr9:10650323-10650104 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 163
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 76, 0

Conread position: 89-318
Cow position: chr9:37677871-37678088 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 162
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 168, 17

Conread position: 89-325
Cow position: chr9:19493489-19493255 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 166
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 129, 172

Conread position: 89-341
Cow position: chr9:17799603-17799850 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 173
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 74, 172

Conread position: 89-341
Cow position: chr9:26440835-26440576 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 169
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 75, 0

Conread position: 89-341
Cow position: chr9:44833986-44833745 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 168
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 72, 0

Conread position: 89-347
Cow position: chr9:27279286-27279544 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 190
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 75, 86

Conread position: 89-347
Cow position: chr9:30477798-30477558 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 186
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 141, 68

Conread position: 89-384
Cow position: chr9:22638079-22638362 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 198
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 77, 0

Conread position: 89-388
Cow position: chr9:33597963-33598247 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 214
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 87, 0

Conread position: 89-403
Cow position: chr9:1751315-1751616 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 294, 78

Conread position: 89-403
Cow position: chr9:47472663-47472977 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 219
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 77, 17

Conread position: 89-404
Cow position: chr9:41282992-41283310 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 230
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 167, 82

Conread position: 89-406
Cow position: chr9:44915120-44914812 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 234
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 60, 112

Conread position: 89-415
Cow position: chr9:17310585-17310269 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 222
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 17, 0

Conread position: 89-422
Cow position: chr9:22696199-22696516 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 77

Conread position: 89-442
Cow position: chr9:50977276-50976926 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 98

Conread position: 89-459
Cow position: chr9:15805946-15805584 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 95

Conread position: 89-469
Cow position: chr9:5594480-5594847 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 0

Conread position: 89-472
Cow position: chr9:1949894-1950272 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 79

Conread position: 89-472
Cow position: chr9:4646348-4645984 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 262
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 143, 75

Conread position: 89-472
Cow position: chr9:8998326-8998705 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 176

Conread position: 89-473
Cow position: chr9:3387666-3388042 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 299, 77

Conread position: 89-473
Cow position: chr9:5433609-5433982 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 174

Conread position: 89-473
Cow position: chr9:9552067-9552436 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 0

Conread position: 89-473
Cow position: chr9:13994143-13994539 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 229

Conread position: 89-473
Cow position: chr9:17411216-17410838 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 84

Conread position: 89-473
Cow position: chr9:17928734-17929107 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 263
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 81, 74

Conread position: 89-473
Cow position: chr9:21030285-21030668 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 77

Conread position: 89-473
Cow position: chr9:30402448-30402066 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 173

Conread position: 89-473
Cow position: chr9:35167153-35167524 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 299, 77

Conread position: 89-473
Cow position: chr9:36445597-36445972 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 158

Conread position: 89-473
Cow position: chr9:41789261-41789638 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 267
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 305, 77

Conread position: 89-473
Cow position: chr9:42446006-42445622 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 171

Conread position: 89-473
Cow position: chr9:43870952-43871323 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 167

Conread position: 89-473
Cow position: chr9:52407141-52407518 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 77

Conread position: 89-473
Cow position: chr9:59386792-59386429 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 88

Conread position: 89-475
Cow position: chr9:5227195-5226812 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 43

Conread position: 89-478
Cow position: chr9:1952293-1951914 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 0

Conread position: 89-484
Cow position: chr9:45756340-45756714 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 270
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 75, 140

Conread position: 89-490
Cow position: chr9:49983112-49982729 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 91-387
Cow position: chr9:55889793-55890075 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 206
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 156, 15

Conread position: 91-467
Cow position: chr9:19714059-19714415 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 291, 75

Conread position: 92-312
Cow position: chr9:49416967-49417182 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 156
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 75, 0

Conread position: 92-347
Cow position: chr9:6338773-6339028 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 180
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 74, 87

Conread position: 92-347
Cow position: chr9:52619630-52619878 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 172
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 122, 23

Conread position: 92-385
Cow position: chr9:9753411-9753132 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 205
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 162, 71

Conread position: 92-417
Cow position: chr9:25546620-25546927 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 225
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 74, 0

Conread position: 92-469
Cow position: chr9:34697319-34696949 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 8

Conread position: 92-469
Cow position: chr9:55075148-55074788 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 20

Conread position: 92-473
Cow position: chr9:50081060-50080695 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 0

Conread position: 93-473
Cow position: chr9:18215929-18215562 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 80

Conread position: 94-359
Cow position: chr9:50703129-50702875 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 189
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 81, 0

Conread position: 95-320
Cow position: chr9:50543443-50543221 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 151
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 91, 166

Conread position: 95-323
Cow position: chr9:47500229-47500001 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 159
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 61, 66

Conread position: 95-343
Cow position: chr9:42062082-42062338 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 182
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 46, 84

Conread position: 95-365
Cow position: chr9:6839976-6840254 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 198
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 71, 261

Conread position: 95-388
Cow position: chr9:43207391-43207113 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 203
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 68, 0

Conread position: 95-398
Cow position: chr9:8288598-8288894 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 221
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 81, 69

Conread position: 95-469
Cow position: chr9:8534707-8534339 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 88

Conread position: 95-472
Cow position: chr9:47906298-47905930 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 270
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 69, 116

Conread position: 95-473
Cow position: chr9:5509707-5510075 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 0

Conread position: 95-473
Cow position: chr9:29185154-29184786 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 167

Conread position: 95-473
Cow position: chr9:64050578-64050209 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 62

Conread position: 96-388
Cow position: chr9:64637536-64637811 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 192
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 10, 0

Conread position: 97-329
Cow position: chr9:8919976-8920206 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 169
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 73, 13

Conread position: 97-417
Cow position: chr9:49764642-49764951 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 98-413
Cow position: chr9:34468592-34468302 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 221
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 68, 0

Conread position: 98-473
Cow position: chr9:39681325-39681709 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 78

Conread position: 100-344
Cow position: chr9:42264202-42264444 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 171
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 142, 66

Conread position: 100-473
Cow position: chr9:24997531-24997153 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 64

Conread position: 103-314
Cow position: chr9:40543334-40543125 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 140
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 83, 0

Conread position: 107-367
Cow position: chr9:35360109-35359857 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 185
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 212, 59

Conread position: 112-403
Cow position: chr9:5531942-5532233 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 69

Conread position: 112-417
Cow position: chr9:5327258-5327546 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 219
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 54, 0

Conread position: 112-473
Cow position: chr9:61997598-61997245 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 65

Conread position: 115-397
Cow position: chr9:40105470-40105751 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 201
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 148, 61

Conread position: 115-401
Cow position: chr9:30749586-30749306 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 207
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 51, 45

Conread position: 130-473
Cow position: chr9:18002934-18002601 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 130-473
Cow position: chr9:34000602-34000261 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 43

Conread position: 155-473
Cow position: chr9:42998428-42998111 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 106

Conread position: 176-473
Cow position: chr9:52505247-52504953 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 7

Conread position: 178-417
Cow position: chr9:58673803-58674036 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 174
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 129, 5

Conread position: 178-473
Cow position: chr9:8997614-8997907 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 0

Conread position: 179-347
Cow position: chr9:43623322-43623486 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 120
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 70, 0

Conread position: 190-469
Cow position: chr9:19539165-19539444 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 158

Conread position: 194-473
Cow position: chr9:38184405-38184127 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 0

Conread position: 210-473
Cow position: chr9:31662559-31662817 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 0

Conread position: 223-410
Cow position: chr9:17634729-17634543 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 139
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 124, 0

Conread position: 226-473
Cow position: chr9:37510126-37510368 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 9

Conread position: 231-472
Cow position: chr9:8418265-8418027 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 0

Conread position: 247-473
Cow position: chr9:20237877-20237657 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 167
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 117, 60

Conread position: 247-473
Cow position: chr9:25969475-25969697 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 176
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 142, 68

Show alignments to all cow chromosomes.