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Cow genome map

           
Conread name:
           
Tra1-TCH01A110102
        

               
Conread position:
               
1-162
               

               
Cow position:
               
chr1:72684762-72684610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
5, 29
               

               
Conread position:
               
1-198
               

               
Cow position:
               
chr1:3607873-3607688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
5, 43
               

               
Conread position:
               
1-219
               

               
Cow position:
               
chr1:87440537-87440325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
7, 79
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chr1:31272373-31272591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
5, 93
               

               
Conread position:
               
1-232
               

               
Cow position:
               
chr1:46035881-46036116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
9, 181
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr1:14308962-14309197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
9, 94
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr1:33206811-33207030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
7, 61
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr1:88913389-88913155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
15, 97
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr1:57880714-57880953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
9, 94
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr1:13810717-13810457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
9, 80
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr1:89498023-89497773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
96, 15
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr1:72103920-72103643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
9, 87
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chr1:75142067-75141801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
9, 94
               

               
Conread position:
               
1-291
               

               
Cow position:
               
chr1:77132677-77132385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
138, 15
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr1:43357941-43358239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
15, 31
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr1:68951695-68951394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 86
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chr1:70297348-70297033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
9, 79
               

               
Conread position:
               
1-314
               

               
Cow position:
               
chr1:25281587-25281918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
9, 92
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr1:21954153-21954462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
76, 100
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr1:31499695-31499383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 61
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr1:41181914-41181597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
7, 79
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr1:51445954-51445635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 57
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chr1:6939565-6939884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
25, 80
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chr1:71119590-71119266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
5, 84
               

               
Conread position:
               
1-318
               

               
Cow position:
               
chr1:1185799-1185493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
9, 78
               

               
Conread position:
               
1-318
               

               
Cow position:
               
chr1:31765303-31765641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
15, 317
               

               
Conread position:
               
1-318
               

               
Cow position:
               
chr1:39426935-39427227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
9, 89
               

               
Conread position:
               
1-318
               

               
Cow position:
               
chr1:53595389-53595079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
9, 54
               

               
Conread position:
               
1-318
               

               
Cow position:
               
chr1:69694924-69695255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
5, 54
               

               
Conread position:
               
1-318
               

               
Cow position:
               
chr1:71938439-71938757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
5, 80
               

               
Conread position:
               
1-318
               

               
Cow position:
               
chr1:95177008-95176689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
15, 93
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr1:95035282-95035607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
15, 39
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr1:22729125-22728793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
6, 36
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr1:63390697-63391026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 91
               

               
Conread position:
               
1-328
               

               
Cow position:
               
chr1:1053649-1053332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
138, 82
               

               
Conread position:
               
1-332
               

               
Cow position:
               
chr1:196935-197262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
21, 88
               

               
Conread position:
               
1-332
               

               
Cow position:
               
chr1:89937298-89937623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
9, 79
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chr1:64302174-64302496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
7, 92
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chr1:55146868-55146536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 84
               

               
Conread position:
               
1-415
               

               
Cow position:
               
chr1:10719409-10719825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
9, 74
               

               
Conread position:
               
1-415
               

               
Cow position:
               
chr1:20384555-20384960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
138, 44
               

               
Conread position:
               
1-415
               

               
Cow position:
               
chr1:51394487-51394075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 87
               

               
Conread position:
               
1-415
               

               
Cow position:
               
chr1:52753090-52753501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
9, 129
               

               
Conread position:
               
1-415
               

               
Cow position:
               
chr1:97622150-97622537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
138, 22
               

               
Conread position:
               
2-240
               

               
Cow position:
               
chr1:69004461-69004232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
161, 35
               

               
Conread position:
               
2-318
               

               
Cow position:
               
chr1:36932221-36931913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 53
               

               
Conread position:
               
2-415
               

               
Cow position:
               
chr1:53308322-53308727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 86
               

               
Conread position:
               
2-415
               

               
Cow position:
               
chr1:55260368-55260765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
137, 33
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chr1:95637898-95637702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
178, 75
               

               
Conread position:
               
3-303
               

               
Cow position:
               
chr1:54162738-54163041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
136, 76
               

               
Conread position:
               
3-309
               

               
Cow position:
               
chr1:85411643-85411342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
140, 42
               

               
Conread position:
               
3-318
               

               
Cow position:
               
chr1:43505595-43505277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
136, 107
               

               
Conread position:
               
3-318
               

               
Cow position:
               
chr1:81355637-81355949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 92
               

               
Conread position:
               
3-349
               

               
Cow position:
               
chr1:61737162-61736826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
65, 34
               

               
Conread position:
               
4-256
               

               
Cow position:
               
chr1:96304904-96305152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
92, 161
               

               
Conread position:
               
4-328
               

               
Cow position:
               
chr1:48730767-48731084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
136, 47
               

               
Conread position:
               
6-240
               

               
Cow position:
               
chr1:51417834-51417612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
133, 44
               

               
Conread position:
               
6-318
               

               
Cow position:
               
chr1:47658408-47658109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
133, 46
               

               
Conread position:
               
6-318
               

               
Cow position:
               
chr1:71257403-71257729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
28, 112
               

               
Conread position:
               
6-332
               

               
Cow position:
               
chr1:66898435-66898738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
123, 78
               

               
Conread position:
               
6-348
               

               
Cow position:
               
chr1:40090019-40089669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
133, 89
               

               
Conread position:
               
6-425
               

               
Cow position:
               
chr1:81868666-81869080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
218, 80
               

               
Conread position:
               
7-231
               

               
Cow position:
               
chr1:91811839-91811631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
220, 31
               

               
Conread position:
               
7-241
               

               
Cow position:
               
chr1:2998010-2997779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
132, 38
               

               
Conread position:
               
7-276
               

               
Cow position:
               
chr1:19885443-19885180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
134, 22
               

               
Conread position:
               
7-293
               

               
Cow position:
               
chr1:11729237-11728956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
132, 79
               

               
Conread position:
               
7-293
               

               
Cow position:
               
chr1:16855637-16855912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
239, 78
               

               
Conread position:
               
7-296
               

               
Cow position:
               
chr1:55705187-55705478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
26, 39
               

               
Conread position:
               
7-311
               

               
Cow position:
               
chr1:41697117-41696818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
132, 22
               

               
Conread position:
               
7-316
               

               
Cow position:
               
chr1:56635160-56634852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
132, 67
               

               
Conread position:
               
7-317
               

               
Cow position:
               
chr1:46218635-46218338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
229, 44
               

               
Conread position:
               
7-318
               

               
Cow position:
               
chr1:35843864-35844176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
126, 72
               

               
Conread position:
               
7-318
               

               
Cow position:
               
chr1:57900662-57900987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
15, 162
               

               
Conread position:
               
7-318
               

               
Cow position:
               
chr1:78857267-78857568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
132, 72
               

               
Conread position:
               
7-325
               

               
Cow position:
               
chr1:35162472-35162151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 80
               

               
Conread position:
               
7-326
               

               
Cow position:
               
chr1:10778625-10778320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 81
               

               
Conread position:
               
7-326
               

               
Cow position:
               
chr1:100421887-100421589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
132, 79
               

               
Conread position:
               
7-327
               

               
Cow position:
               
chr1:4032694-4032379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 86
               

               
Conread position:
               
7-328
               

               
Cow position:
               
chr1:6794863-6795192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
132, 28
               

               
Conread position:
               
7-331
               

               
Cow position:
               
chr1:91066090-91066407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 7
               

               
Conread position:
               
7-334
               

               
Cow position:
               
chr1:34856566-34856891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 86
               

               
Conread position:
               
7-335
               

               
Cow position:
               
chr1:53374495-53374172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 63
               

               
Conread position:
               
7-338
               

               
Cow position:
               
chr1:19466115-19465796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 83
               

               
Conread position:
               
7-356
               

               
Cow position:
               
chr1:61884975-61884631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
227, 72
               

               
Conread position:
               
7-415
               

               
Cow position:
               
chr1:31390526-31390935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 79
               

               
Conread position:
               
7-415
               

               
Cow position:
               
chr1:37309457-37309845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 77
               

               
Conread position:
               
7-415
               

               
Cow position:
               
chr1:44125576-44125984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
76, 22
               

               
Conread position:
               
7-425
               

               
Cow position:
               
chr1:7714029-7713606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
104, 88
               

               
Conread position:
               
8-174
               

               
Cow position:
               
chr1:6972587-6972431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
131, 69
               

               
Conread position:
               
8-229
               

               
Cow position:
               
chr1:7609681-7609461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
131, 86
               

               
Conread position:
               
8-252
               

               
Cow position:
               
chr1:182865-182633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
8-277
               

               
Cow position:
               
chr1:4414149-4414413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
131, 21
               

               
Conread position:
               
8-291
               

               
Cow position:
               
chr1:81228273-81228559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 101
               

               
Conread position:
               
8-314
               

               
Cow position:
               
chr1:21934112-21934414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
131, 79
               

               
Conread position:
               
8-318
               

               
Cow position:
               
chr1:44769048-44769356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 54
               

               
Conread position:
               
8-318
               

               
Cow position:
               
chr1:81319353-81319044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
51, 68
               

               
Conread position:
               
8-335
               

               
Cow position:
               
chr1:33996863-33997175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
131, 80
               

               
Conread position:
               
9-138
               

               
Cow position:
               
chr1:30504561-30504440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
9-144
               

               
Cow position:
               
chr1:45223641-45223511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
130, 84
               

               
Conread position:
               
9-144
               

               
Cow position:
               
chr1:73936085-73936220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
131, 76
               

               
Conread position:
               
9-177
               

               
Cow position:
               
chr1:42541658-42541495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
130, 74
               

               
Conread position:
               
9-186
               

               
Cow position:
               
chr1:81580237-81580066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
87, 14
               

               
Conread position:
               
9-187
               

               
Cow position:
               
chr1:61542859-61543029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
130, 21
               

               
Conread position:
               
9-198
               

               
Cow position:
               
chr1:43311712-43311898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
9-199
               

               
Cow position:
               
chr1:47790602-47790787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
128, 85
               

               
Conread position:
               
9-201
               

               
Cow position:
               
chr1:8984622-8984810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
43, 81
               

               
Conread position:
               
9-203
               

               
Cow position:
               
chr1:6294438-6294625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
51, 96
               

               
Conread position:
               
9-208
               

               
Cow position:
               
chr1:64572575-64572381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
130, 83
               

               
Conread position:
               
9-209
               

               
Cow position:
               
chr1:85550018-85550211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
130, 84
               

               
Conread position:
               
9-210
               

               
Cow position:
               
chr1:86073656-86073460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
60, 65
               

               
Conread position:
               
9-215
               

               
Cow position:
               
chr1:30047542-30047733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
130, 29
               

               
Conread position:
               
9-215
               

               
Cow position:
               
chr1:92996831-92997038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
130, 84
               

               
Conread position:
               
9-219
               

               
Cow position:
               
chr1:2975934-2976138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
35, 66
               

               
Conread position:
               
9-222
               

               
Cow position:
               
chr1:39224866-39225071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
130, 76
               

               
Conread position:
               
9-225
               

               
Cow position:
               
chr1:23512599-23512804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
9-229
               

               
Cow position:
               
chr1:62519423-62519204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
130, 46
               

               
Conread position:
               
9-229
               

               
Cow position:
               
chr1:85647720-85647937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
134, 70
               

               
Conread position:
               
9-229
               

               
Cow position:
               
chr1:86682500-86682716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
132, 79
               

               
Conread position:
               
9-231
               

               
Cow position:
               
chr1:60281433-60281215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
130, 79
               

               
Conread position:
               
9-231
               

               
Cow position:
               
chr1:70435058-70434848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
9-231
               

               
Cow position:
               
chr1:98413832-98413611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
130, 84
               

               
Conread position:
               
9-232
               

               
Cow position:
               
chr1:22192829-22192607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
91, 111
               

               
Conread position:
               
9-232
               

               
Cow position:
               
chr1:93554896-93554687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
173, 79
               

               
Conread position:
               
9-235
               

               
Cow position:
               
chr1:54156675-54156897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
130, 14
               

               
Conread position:
               
9-239
               

               
Cow position:
               
chr1:33409565-33409791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
130, 69
               

               
Conread position:
               
9-240
               

               
Cow position:
               
chr1:42398131-42398361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
130, 83
               

               
Conread position:
               
9-240
               

               
Cow position:
               
chr1:55428896-55429120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
44, 75
               

               
Conread position:
               
9-240
               

               
Cow position:
               
chr1:65904938-65905172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
124, 92
               

               
Conread position:
               
9-240
               

               
Cow position:
               
chr1:85593835-85593610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
38, 29
               

               
Conread position:
               
9-241
               

               
Cow position:
               
chr1:53370143-53369914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
130, 34
               

               
Conread position:
               
9-242
               

               
Cow position:
               
chr1:49077271-49077509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
130, 81
               

               
Conread position:
               
9-245
               

               
Cow position:
               
chr1:6788223-6788454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
130, 96
               

               
Conread position:
               
9-245
               

               
Cow position:
               
chr1:16060944-16061188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
91, 199
               

               
Conread position:
               
9-245
               

               
Cow position:
               
chr1:20667682-20667911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
130, 79
               

               
Conread position:
               
9-245
               

               
Cow position:
               
chr1:73196171-73196400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
130, 66
               

               
Conread position:
               
9-246
               

               
Cow position:
               
chr1:9470338-9470567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
134, 78
               

               
Conread position:
               
9-246
               

               
Cow position:
               
chr1:25387110-25386881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
130, 18
               

               
Conread position:
               
9-249
               

               
Cow position:
               
chr1:96081540-96081311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
172, 75
               

               
Conread position:
               
9-254
               

               
Cow position:
               
chr1:24445568-24445811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
130, 29
               

               
Conread position:
               
9-254
               

               
Cow position:
               
chr1:65318635-65318399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
130, 75
               

               
Conread position:
               
9-259
               

               
Cow position:
               
chr1:61742401-61742651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
131, 74
               

               
Conread position:
               
9-260
               

               
Cow position:
               
chr1:43703469-43703226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 84
               

               
Conread position:
               
9-261
               

               
Cow position:
               
chr1:71228152-71227887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
110, 17
               

               
Conread position:
               
9-263
               

               
Cow position:
               
chr1:58825601-58825357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
233, 28
               

               
Conread position:
               
9-264
               

               
Cow position:
               
chr1:51654484-51654218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
9-264
               

               
Cow position:
               
chr1:70026285-70026534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
33, 75
               

               
Conread position:
               
9-264
               

               
Cow position:
               
chr1:84906003-84906260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
87, 103
               

               
Conread position:
               
9-264
               

               
Cow position:
               
chr1:90976028-90976275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
130, 77
               

               
Conread position:
               
9-266
               

               
Cow position:
               
chr1:724800-724540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
130, 76
               

               
Conread position:
               
9-268
               

               
Cow position:
               
chr1:15333951-15333681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
88, 26
               

               
Conread position:
               
9-274
               

               
Cow position:
               
chr1:46030301-46030555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
130, 79
               

               
Conread position:
               
9-275
               

               
Cow position:
               
chr1:86279473-86279211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
172, 57
               

               
Conread position:
               
9-276
               

               
Cow position:
               
chr1:68863091-68862831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
152, 26
               

               
Conread position:
               
9-279
               

               
Cow position:
               
chr1:12464604-12464871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
130, 68
               

               
Conread position:
               
9-279
               

               
Cow position:
               
chr1:71643603-71643871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
179, 83
               

               
Conread position:
               
9-282
               

               
Cow position:
               
chr1:40482352-40482622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
172, 59
               

               
Conread position:
               
9-285
               

               
Cow position:
               
chr1:75383037-75382777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
130, 26
               

               
Conread position:
               
9-287
               

               
Cow position:
               
chr1:74955961-74956239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
130, 26
               

               
Conread position:
               
9-290
               

               
Cow position:
               
chr1:6304804-6305087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
130, 84
               

               
Conread position:
               
9-290
               

               
Cow position:
               
chr1:78092097-78091818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
130, 84
               

               
Conread position:
               
9-291
               

               
Cow position:
               
chr1:31348377-31348660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 83
               

               
Conread position:
               
9-291
               

               
Cow position:
               
chr1:49433204-49433484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
130, 79
               

               
Conread position:
               
9-291
               

               
Cow position:
               
chr1:68845430-68845705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
130, 26
               

               
Conread position:
               
9-291
               

               
Cow position:
               
chr1:98311130-98310841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
130, 90
               

               
Conread position:
               
9-293
               

               
Cow position:
               
chr1:26702147-26702429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 20
               

               
Conread position:
               
9-293
               

               
Cow position:
               
chr1:34771443-34771725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
129, 79
               

               
Conread position:
               
9-293
               

               
Cow position:
               
chr1:63138901-63138617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
130, 70
               

               
Conread position:
               
9-295
               

               
Cow position:
               
chr1:7971472-7971207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
44, 85
               

               
Conread position:
               
9-295
               

               
Cow position:
               
chr1:95654653-95654940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
130, 90
               

               
Conread position:
               
9-296
               

               
Cow position:
               
chr1:26201292-26200996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
89, 37
               

               
Conread position:
               
9-296
               

               
Cow position:
               
chr1:52052657-52052928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
130, 91
               

               
Conread position:
               
9-300
               

               
Cow position:
               
chr1:64804042-64804336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
172, 96
               

               
Conread position:
               
9-303
               

               
Cow position:
               
chr1:78809936-78809652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
131, 76
               

               
Conread position:
               
9-304
               

               
Cow position:
               
chr1:24728780-24729072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
130, 29
               

               
Conread position:
               
9-305
               

               
Cow position:
               
chr1:10942034-10942325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
128, 88
               

               
Conread position:
               
9-305
               

               
Cow position:
               
chr1:10964352-10964061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
128, 88
               

               
Conread position:
               
9-305
               

               
Cow position:
               
chr1:13637603-13637904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
132, 79
               

               
Conread position:
               
9-305
               

               
Cow position:
               
chr1:97611600-97611886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
176, 88
               

               
Conread position:
               
9-307
               

               
Cow position:
               
chr1:55230036-55229749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
130, 81
               

               
Conread position:
               
9-307
               

               
Cow position:
               
chr1:55357235-55357521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
130, 26
               

               
Conread position:
               
9-307
               

               
Cow position:
               
chr1:85596998-85596708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
122, 34
               

               
Conread position:
               
9-307
               

               
Cow position:
               
chr1:89341920-89342228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
9-307
               

               
Cow position:
               
chr1:98551780-98551478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
130, 82
               

               
Conread position:
               
9-309
               

               
Cow position:
               
chr1:19482021-19482311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
57, 40
               

               
Conread position:
               
9-309
               

               
Cow position:
               
chr1:21508453-21508150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
128, 95
               

               
Conread position:
               
9-311
               

               
Cow position:
               
chr1:40531043-40531348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
78, 44
               

               
Conread position:
               
9-311
               

               
Cow position:
               
chr1:44507033-44506729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 78
               

               
Conread position:
               
9-314
               

               
Cow position:
               
chr1:52995084-52994782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
130, 82
               

               
Conread position:
               
9-315
               

               
Cow position:
               
chr1:3923740-3924037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
130, 84
               

               
Conread position:
               
9-315
               

               
Cow position:
               
chr1:3962627-3962927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 82
               

               
Conread position:
               
9-315
               

               
Cow position:
               
chr1:25383728-25383419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
130, 55
               

               
Conread position:
               
9-315
               

               
Cow position:
               
chr1:93528757-93528447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 34
               

               
Conread position:
               
9-316
               

               
Cow position:
               
chr1:16767028-16767329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
130, 28
               

               
Conread position:
               
9-316
               

               
Cow position:
               
chr1:56477652-56477351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 83
               

               
Conread position:
               
9-316
               

               
Cow position:
               
chr1:100400132-100400445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
30, 85
               

               
Conread position:
               
9-317
               

               
Cow position:
               
chr1:874714-874398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
130, 86
               

               
Conread position:
               
9-317
               

               
Cow position:
               
chr1:1981053-1981355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
42, 47
               

               
Conread position:
               
9-317
               

               
Cow position:
               
chr1:57395876-57396174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
130, 78
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr1:635254-634945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
130, 81
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr1:5023702-5023986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
288, 88
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr1:7350608-7350292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
126, 84
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr1:10633106-10632807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
133, 70
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr1:11226186-11226491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
161, 84
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr1:11913818-11914123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
36, 85
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr1:22730794-22730515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
228, 79
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr1:24133003-24133301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
130, 20
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr1:38277968-38278291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
78, 92
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr1:42873890-42874193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
32, 48
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr1:45019741-45020049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
132, 92
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr1:45288811-45289119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 84
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr1:47233418-47233721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
130, 70
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr1:51531811-51531527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
130, 26
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr1:54206756-54207062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
130, 21
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr1:54258627-54258321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 84
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr1:55135896-55135590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
29, 84
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr1:63434746-63435049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
130, 79
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr1:63504393-63504093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
130, 5
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr1:66355654-66355954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
98, 29
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr1:68618871-68619183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
33, 59
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr1:68855225-68854929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
87, 98
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr1:69264868-69264576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
180, 42
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr1:70380083-70380392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
130, 40
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr1:70538671-70538357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
130, 72
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr1:71253496-71253801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
130, 20
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr1:72034864-72035175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 63
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr1:72068775-72069073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
122, 76
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr1:73584350-73584648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
124, 14
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr1:79165023-79165338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 17
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr1:80900180-80899862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
130, 70
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr1:84811879-84812183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
215, 84
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr1:89350025-89349731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
130, 68
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr1:95215130-95215432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
138, 75
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr1:98594625-98594325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
130, 40
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr1:100800413-100800111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
35, 71
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr1:102266208-102266515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
178, 78
               

               
Conread position:
               
9-325
               

               
Cow position:
               
chr1:50930919-50931222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
128, 20
               

               
Conread position:
               
9-325
               

               
Cow position:
               
chr1:82880704-82880412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
125, 20
               

               
Conread position:
               
9-326
               

               
Cow position:
               
chr1:1956274-1956583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
226, 12
               

               
Conread position:
               
9-326
               

               
Cow position:
               
chr1:1991358-1991682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
24, 47
               

               
Conread position:
               
9-326
               

               
Cow position:
               
chr1:56711543-56711872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
79, 26
               

               
Conread position:
               
9-326
               

               
Cow position:
               
chr1:61564853-61564537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
130, 39
               

               
Conread position:
               
9-326
               

               
Cow position:
               
chr1:61723959-61724279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
16, 7
               

               
Conread position:
               
9-327
               

               
Cow position:
               
chr1:54199319-54199635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 84
               

               
Conread position:
               
9-328
               

               
Cow position:
               
chr1:56225529-56225221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
130, 70
               

               
Conread position:
               
9-329
               

               
Cow position:
               
chr1:1165659-1165343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
130, 74
               

               
Conread position:
               
9-330
               

               
Cow position:
               
chr1:20000688-20001007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 74
               

               
Conread position:
               
9-330
               

               
Cow position:
               
chr1:24235459-24235776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
131, 76
               

               
Conread position:
               
9-330
               

               
Cow position:
               
chr1:32341149-32341465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
130, 26
               

               
Conread position:
               
9-330
               

               
Cow position:
               
chr1:57639455-57639778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
121, 77
               

               
Conread position:
               
9-330
               

               
Cow position:
               
chr1:64678755-64678439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
225, 72
               

               
Conread position:
               
9-332
               

               
Cow position:
               
chr1:4027924-4027601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
161, 42
               

               
Conread position:
               
9-332
               

               
Cow position:
               
chr1:7740007-7739711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
9-332
               

               
Cow position:
               
chr1:26895751-26896085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
79, 172
               

               
Conread position:
               
9-332
               

               
Cow position:
               
chr1:36998245-36997937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
172, 63
               

               
Conread position:
               
9-332
               

               
Cow position:
               
chr1:41056738-41056424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
213, 70
               

               
Conread position:
               
9-332
               

               
Cow position:
               
chr1:52435332-52435010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
171, 69
               

               
Conread position:
               
9-332
               

               
Cow position:
               
chr1:60032539-60032858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
130, 79
               

               
Conread position:
               
9-332
               

               
Cow position:
               
chr1:60907437-60907101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
130, 79
               

               
Conread position:
               
9-332
               

               
Cow position:
               
chr1:72286008-72286309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
130, 84
               

               
Conread position:
               
9-332
               

               
Cow position:
               
chr1:81613449-81613125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
130, 84
               

               
Conread position:
               
9-332
               

               
Cow position:
               
chr1:85774517-85774199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
51, 33
               

               
Conread position:
               
9-332
               

               
Cow position:
               
chr1:90864233-90864560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
130, 70
               

               
Conread position:
               
9-332
               

               
Cow position:
               
chr1:92436930-92437251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
130, 16
               

               
Conread position:
               
9-333
               

               
Cow position:
               
chr1:100324689-100324987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
130, 51
               

               
Conread position:
               
9-334
               

               
Cow position:
               
chr1:26943368-26943046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
122, 76
               

               
Conread position:
               
9-335
               

               
Cow position:
               
chr1:60707463-60707140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
69, 29
               

               
Conread position:
               
9-336
               

               
Cow position:
               
chr1:45007526-45007203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
44, 84
               

               
Conread position:
               
9-338
               

               
Cow position:
               
chr1:93110557-93110891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 16
               

               
Conread position:
               
9-340
               

               
Cow position:
               
chr1:49317436-49317758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
130, 79
               

               
Conread position:
               
9-342
               

               
Cow position:
               
chr1:75744922-75744590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
130, 70
               

               
Conread position:
               
9-342
               

               
Cow position:
               
chr1:79278387-79278710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 17
               

               
Conread position:
               
9-343
               

               
Cow position:
               
chr1:83748002-83747672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
130, 16
               

               
Conread position:
               
9-344
               

               
Cow position:
               
chr1:6941528-6941194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 91
               

               
Conread position:
               
9-345
               

               
Cow position:
               
chr1:72141635-72141291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
78, 49
               

               
Conread position:
               
9-346
               

               
Cow position:
               
chr1:6166300-6165977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
130, 28
               

               
Conread position:
               
9-348
               

               
Cow position:
               
chr1:70533878-70534210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
160, 17
               

               
Conread position:
               
9-350
               

               
Cow position:
               
chr1:82337720-82338063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 26
               

               
Conread position:
               
9-352
               

               
Cow position:
               
chr1:6958941-6958599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 91
               

               
Conread position:
               
9-360
               

               
Cow position:
               
chr1:74084131-74084477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 27
               

               
Conread position:
               
9-365
               

               
Cow position:
               
chr1:93810489-93810150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 79
               

               
Conread position:
               
9-368
               

               
Cow position:
               
chr1:34686240-34685899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 31
               

               
Conread position:
               
9-368
               

               
Cow position:
               
chr1:65103680-65103339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
35, 23
               

               
Conread position:
               
9-411
               

               
Cow position:
               
chr1:21787396-21786992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 88
               

               
Conread position:
               
9-413
               

               
Cow position:
               
chr1:42360346-42359924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
90, 134
               

               
Conread position:
               
9-414
               

               
Cow position:
               
chr1:3323928-3323520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
172, 84
               

               
Conread position:
               
9-414
               

               
Cow position:
               
chr1:92963455-92963056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
130, 58
               

               
Conread position:
               
9-414
               

               
Cow position:
               
chr1:96964376-96963985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
132, 28
               

               
Conread position:
               
9-414
               

               
Cow position:
               
chr1:100741338-100740953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 28
               

               
Conread position:
               
9-415
               

               
Cow position:
               
chr1:21460932-21460535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
122, 17
               

               
Conread position:
               
9-415
               

               
Cow position:
               
chr1:31413912-31414300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 75
               

               
Conread position:
               
9-415
               

               
Cow position:
               
chr1:31934567-31934172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
130, 79
               

               
Conread position:
               
9-415
               

               
Cow position:
               
chr1:34300491-34300883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
130, 70
               

               
Conread position:
               
9-415
               

               
Cow position:
               
chr1:42555326-42554915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 75
               

               
Conread position:
               
9-415
               

               
Cow position:
               
chr1:48105371-48105771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
130, 51
               

               
Conread position:
               
9-415
               

               
Cow position:
               
chr1:61721321-61721701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
151, 78
               

               
Conread position:
               
9-415
               

               
Cow position:
               
chr1:68253654-68253256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
32, 88
               

               
Conread position:
               
9-415
               

               
Cow position:
               
chr1:68817739-68818144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
32, 20
               

               
Conread position:
               
9-415
               

               
Cow position:
               
chr1:76019636-76020015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 20
               

               
Conread position:
               
9-415
               

               
Cow position:
               
chr1:80336189-80336585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
127, 90
               

               
Conread position:
               
9-415
               

               
Cow position:
               
chr1:81913094-81913484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
222, 19
               

               
Conread position:
               
9-415
               

               
Cow position:
               
chr1:86113340-86113748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
130, 63
               

               
Conread position:
               
9-415
               

               
Cow position:
               
chr1:90868381-90868773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 74
               

               
Conread position:
               
9-415
               

               
Cow position:
               
chr1:91816711-91817106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 70
               

               
Conread position:
               
9-415
               

               
Cow position:
               
chr1:94226495-94226883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 41
               

               
Conread position:
               
9-416
               

               
Cow position:
               
chr1:73960763-73960364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
130, 70
               

               
Conread position:
               
10-237
               

               
Cow position:
               
chr1:42545720-42545945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
96, 77
               

               
Conread position:
               
10-240
               

               
Cow position:
               
chr1:50345605-50345382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
129, 65
               

               
Conread position:
               
10-252
               

               
Cow position:
               
chr1:57420672-57420902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
129, 74
               

               
Conread position:
               
10-256
               

               
Cow position:
               
chr1:43822458-43822225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
129, 16
               

               
Conread position:
               
10-283
               

               
Cow position:
               
chr1:26178752-26179026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
171, 82
               

               
Conread position:
               
10-291
               

               
Cow position:
               
chr1:77720189-77720451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
129, 33
               

               
Conread position:
               
10-309
               

               
Cow position:
               
chr1:10655540-10655240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
129, 11
               

               
Conread position:
               
10-309
               

               
Cow position:
               
chr1:36875085-36874778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
90, 25
               

               
Conread position:
               
10-318
               

               
Cow position:
               
chr1:61176237-61175937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
129, 62
               

               
Conread position:
               
10-318
               

               
Cow position:
               
chr1:72011754-72012049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
129, 80
               

               
Conread position:
               
10-318
               

               
Cow position:
               
chr1:89485639-89485345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
32, 82
               

               
Conread position:
               
10-332
               

               
Cow position:
               
chr1:51981281-51980967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
129, 83
               

               
Conread position:
               
10-332
               

               
Cow position:
               
chr1:71691880-71691554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
73, 54
               

               
Conread position:
               
10-332
               

               
Cow position:
               
chr1:79844524-79844209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
129, 66
               

               
Conread position:
               
10-337
               

               
Cow position:
               
chr1:96712747-96713079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
56, 33
               

               
Conread position:
               
10-349
               

               
Cow position:
               
chr1:31871484-31871143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
129, 25
               

               
Conread position:
               
10-358
               

               
Cow position:
               
chr1:77880675-77881001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
95, 25
               

               
Conread position:
               
10-415
               

               
Cow position:
               
chr1:4374278-4374673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 83
               

               
Conread position:
               
10-415
               

               
Cow position:
               
chr1:97755579-97755183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
105, 67
               

               
Conread position:
               
11-186
               

               
Cow position:
               
chr1:26427803-26427972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
128, 76
               

               
Conread position:
               
11-200
               

               
Cow position:
               
chr1:72813674-72813488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
127, 61
               

               
Conread position:
               
11-210
               

               
Cow position:
               
chr1:47886422-47886623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
51, 35
               

               
Conread position:
               
11-213
               

               
Cow position:
               
chr1:85141677-85141869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
128, 19
               

               
Conread position:
               
11-221
               

               
Cow position:
               
chr1:93228583-93228383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
128, 74
               

               
Conread position:
               
11-225
               

               
Cow position:
               
chr1:22525936-22525730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
130, 73
               

               
Conread position:
               
11-231
               

               
Cow position:
               
chr1:87095156-87095386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
11-240
               

               
Cow position:
               
chr1:38753981-38753753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
128, 77
               

               
Conread position:
               
11-252
               

               
Cow position:
               
chr1:24876320-24876089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
170, 27
               

               
Conread position:
               
11-264
               

               
Cow position:
               
chr1:94261594-94261355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
178, 59
               

               
Conread position:
               
11-273
               

               
Cow position:
               
chr1:43340559-43340824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
128, 24
               

               
Conread position:
               
11-289
               

               
Cow position:
               
chr1:81301033-81301313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
125, 64
               

               
Conread position:
               
11-290
               

               
Cow position:
               
chr1:69415651-69415936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
128, 68
               

               
Conread position:
               
11-290
               

               
Cow position:
               
chr1:91800542-91800824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
217, 10
               

               
Conread position:
               
11-292
               

               
Cow position:
               
chr1:15691393-15691117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
128, 66
               

               
Conread position:
               
11-293
               

               
Cow position:
               
chr1:73761295-73761573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
22, 63
               

               
Conread position:
               
11-293
               

               
Cow position:
               
chr1:98030981-98030693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
97, 81
               

               
Conread position:
               
11-304
               

               
Cow position:
               
chr1:3429451-3429741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
76, 102
               

               
Conread position:
               
11-308
               

               
Cow position:
               
chr1:4539364-4539675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
66, 157
               

               
Conread position:
               
11-310
               

               
Cow position:
               
chr1:76096497-76096201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
128, 68
               

               
Conread position:
               
11-316
               

               
Cow position:
               
chr1:52414900-52415203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
125, 39
               

               
Conread position:
               
11-318
               

               
Cow position:
               
chr1:25793381-25793686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
128, 26
               

               
Conread position:
               
11-318
               

               
Cow position:
               
chr1:26688413-26688724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
27, 53
               

               
Conread position:
               
11-318
               

               
Cow position:
               
chr1:43352598-43352895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
126, 32
               

               
Conread position:
               
11-318
               

               
Cow position:
               
chr1:51968520-51968224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
102, 47
               

               
Conread position:
               
11-318
               

               
Cow position:
               
chr1:53520969-53520660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
128, 82
               

               
Conread position:
               
11-318
               

               
Cow position:
               
chr1:71136211-71135907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
128, 80
               

               
Conread position:
               
11-318
               

               
Cow position:
               
chr1:80764477-80764781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
128, 68
               

               
Conread position:
               
11-318
               

               
Cow position:
               
chr1:99642311-99642616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
128, 44
               

               
Conread position:
               
11-325
               

               
Cow position:
               
chr1:1916169-1916489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
130, 68
               

               
Conread position:
               
11-325
               

               
Cow position:
               
chr1:101551521-101551204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
82, 19
               

               
Conread position:
               
11-328
               

               
Cow position:
               
chr1:90423024-90423342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
128, 27
               

               
Conread position:
               
11-330
               

               
Cow position:
               
chr1:54478387-54478064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 45
               

               
Conread position:
               
11-331
               

               
Cow position:
               
chr1:15547528-15547210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
135, 14
               

               
Conread position:
               
11-332
               

               
Cow position:
               
chr1:44155308-44155002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
30, 69
               

               
Conread position:
               
11-338
               

               
Cow position:
               
chr1:57247493-57247170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
152, 45
               

               
Conread position:
               
11-347
               

               
Cow position:
               
chr1:27145593-27145927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
106, 73
               

               
Conread position:
               
11-368
               

               
Cow position:
               
chr1:22777485-22777847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
128, 74
               

               
Conread position:
               
11-369
               

               
Cow position:
               
chr1:99609426-99609069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
128, 14
               

               
Conread position:
               
11-412
               

               
Cow position:
               
chr1:80973549-80973955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
128, 23
               

               
Conread position:
               
11-412
               

               
Cow position:
               
chr1:102647215-102647601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 79
               

               
Conread position:
               
11-415
               

               
Cow position:
               
chr1:20099424-20099026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
185, 14
               

               
Conread position:
               
11-415
               

               
Cow position:
               
chr1:39068898-39069293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 77
               

               
Conread position:
               
11-415
               

               
Cow position:
               
chr1:63595996-63596394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
88, 65
               

               
Conread position:
               
11-415
               

               
Cow position:
               
chr1:69539749-69539362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 77
               

               
Conread position:
               
11-415
               

               
Cow position:
               
chr1:82884335-82884720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
128, 68
               

               
Conread position:
               
12-235
               

               
Cow position:
               
chr1:98372689-98372473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
164, 72
               

               
Conread position:
               
12-256
               

               
Cow position:
               
chr1:90413436-90413200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
34, 25
               

               
Conread position:
               
13-296
               

               
Cow position:
               
chr1:87072752-87072480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
222, 37
               

               
Conread position:
               
14-245
               

               
Cow position:
               
chr1:101632282-101632508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
125, 74
               

               
Conread position:
               
14-264
               

               
Cow position:
               
chr1:24542515-24542774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
34, 46
               

               
Conread position:
               
14-264
               

               
Cow position:
               
chr1:40192644-40192870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
14-264
               

               
Cow position:
               
chr1:43872264-43872527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
14-264
               

               
Cow position:
               
chr1:82443400-82443649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
127, 12
               

               
Conread position:
               
14-288
               

               
Cow position:
               
chr1:98461341-98461074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
218, 74
               

               
Conread position:
               
14-293
               

               
Cow position:
               
chr1:89381330-89381057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
125, 66
               

               
Conread position:
               
14-311
               

               
Cow position:
               
chr1:100770697-100770975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
26, 80
               

               
Conread position:
               
14-315
               

               
Cow position:
               
chr1:53425232-53424944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 80
               

               
Conread position:
               
14-332
               

               
Cow position:
               
chr1:29626857-29627175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
125, 74
               

               
Conread position:
               
14-332
               

               
Cow position:
               
chr1:85029008-85028701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
197, 71
               

               
Conread position:
               
14-332
               

               
Cow position:
               
chr1:99136375-99136690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
50, 38
               

               
Conread position:
               
14-415
               

               
Cow position:
               
chr1:77620601-77620211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
125, 72
               

               
Conread position:
               
15-235
               

               
Cow position:
               
chr1:77683406-77683198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
124, 73
               

               
Conread position:
               
15-317
               

               
Cow position:
               
chr1:10063922-10064223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
147, 75
               

               
Conread position:
               
15-317
               

               
Cow position:
               
chr1:90641087-90640780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 20
               

               
Conread position:
               
15-331
               

               
Cow position:
               
chr1:76470707-76470400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 28
               

               
Conread position:
               
16-240
               

               
Cow position:
               
chr1:9534218-9534011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
123, 58
               

               
Conread position:
               
16-240
               

               
Cow position:
               
chr1:70028633-70028418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
123, 67
               

               
Conread position:
               
16-254
               

               
Cow position:
               
chr1:57783057-57782831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
31, 21
               

               
Conread position:
               
16-316
               

               
Cow position:
               
chr1:78791251-78791551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
123, 59
               

               
Conread position:
               
16-318
               

               
Cow position:
               
chr1:8349265-8349557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 72
               

               
Conread position:
               
16-318
               

               
Cow position:
               
chr1:71045808-71045509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 76
               

               
Conread position:
               
16-326
               

               
Cow position:
               
chr1:82378845-82378540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
39, 64
               

               
Conread position:
               
16-328
               

               
Cow position:
               
chr1:41735566-41735881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
56, 63
               

               
Conread position:
               
16-334
               

               
Cow position:
               
chr1:21835984-21835686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 19
               

               
Conread position:
               
16-342
               

               
Cow position:
               
chr1:59650323-59649996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
120, 94
               

               
Conread position:
               
16-346
               

               
Cow position:
               
chr1:45535760-45535428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 77
               

               
Conread position:
               
16-360
               

               
Cow position:
               
chr1:74947064-74947405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 87
               

               
Conread position:
               
16-364
               

               
Cow position:
               
chr1:23099956-23099605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
123, 72
               

               
Conread position:
               
16-368
               

               
Cow position:
               
chr1:95765039-95765385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
123, 27
               

               
Conread position:
               
19-240
               

               
Cow position:
               
chr1:75347675-75347456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
120, 60
               

               
Conread position:
               
19-240
               

               
Cow position:
               
chr1:80631749-80631534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
23, 70
               

               
Conread position:
               
19-310
               

               
Cow position:
               
chr1:64189551-64189264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
120, 74
               

               
Conread position:
               
19-316
               

               
Cow position:
               
chr1:8869609-8869907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
120, 61
               

               
Conread position:
               
19-318
               

               
Cow position:
               
chr1:7142800-7143095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
120, 18
               

               
Conread position:
               
19-341
               

               
Cow position:
               
chr1:2765464-2765148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
142, 60
               

               
Conread position:
               
19-412
               

               
Cow position:
               
chr1:18223818-18224214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
120, 98
               

               
Conread position:
               
19-415
               

               
Cow position:
               
chr1:99807666-99808063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
50, 61
               

               
Conread position:
               
20-170
               

               
Cow position:
               
chr1:71796261-71796408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
20-188
               

               
Cow position:
               
chr1:45285712-45285546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
119, 74
               

               
Conread position:
               
20-264
               

               
Cow position:
               
chr1:89443429-89443669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
123, 59
               

               
Conread position:
               
20-317
               

               
Cow position:
               
chr1:34159884-34159587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 67
               

               
Conread position:
               
20-318
               

               
Cow position:
               
chr1:66430340-66430055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
164, 23
               

               
Conread position:
               
20-332
               

               
Cow position:
               
chr1:52329469-52329788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
67, 104
               

               
Conread position:
               
20-344
               

               
Cow position:
               
chr1:49131062-49131394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
21, 43
               

               
Conread position:
               
20-415
               

               
Cow position:
               
chr1:89741951-89742347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
121, 67
               

               
Conread position:
               
21-231
               

               
Cow position:
               
chr1:92369786-92369577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
18, 74
               

               
Conread position:
               
21-293
               

               
Cow position:
               
chr1:98360349-98360630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
118, 5
               

               
Conread position:
               
21-316
               

               
Cow position:
               
chr1:68217313-68217604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
118, 71
               

               
Conread position:
               
21-318
               

               
Cow position:
               
chr1:81563793-81563487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
55, 95
               

               
Conread position:
               
21-318
               

               
Cow position:
               
chr1:84255815-84255508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
86, 58
               

               
Conread position:
               
21-318
               

               
Cow position:
               
chr1:96478748-96478449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
53, 70
               

               
Conread position:
               
21-318
               

               
Cow position:
               
chr1:101634760-101634455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
89, 46
               

               
Conread position:
               
21-333
               

               
Cow position:
               
chr1:8663-8361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
161, 64
               

               
Conread position:
               
21-352
               

               
Cow position:
               
chr1:32244351-32244679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
118, 16
               

               
Conread position:
               
21-415
               

               
Cow position:
               
chr1:22827205-22826832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
210, 63
               

               
Conread position:
               
22-219
               

               
Cow position:
               
chr1:83410492-83410300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
117, 55
               

               
Conread position:
               
22-240
               

               
Cow position:
               
chr1:20544344-20544131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
31, 16
               

               
Conread position:
               
22-271
               

               
Cow position:
               
chr1:83072488-83072244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
210, 55
               

               
Conread position:
               
22-326
               

               
Cow position:
               
chr1:45555413-45555108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 64
               

               
Conread position:
               
22-328
               

               
Cow position:
               
chr1:48444147-48444438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 57
               

               
Conread position:
               
22-331
               

               
Cow position:
               
chr1:88652684-88652372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
22, 63
               

               
Conread position:
               
22-415
               

               
Cow position:
               
chr1:82406502-82406891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
117, 81
               

               
Conread position:
               
23-195
               

               
Cow position:
               
chr1:15169287-15169451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
116, 71
               

               
Conread position:
               
23-245
               

               
Cow position:
               
chr1:25734914-25734689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
116, 80
               

               
Conread position:
               
24-292
               

               
Cow position:
               
chr1:43447784-43448043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
115, 19
               

               
Conread position:
               
24-332
               

               
Cow position:
               
chr1:52039683-52039377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
71, 78
               

               
Conread position:
               
26-235
               

               
Cow position:
               
chr1:97696790-97696581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
111, 62
               

               
Conread position:
               
26-256
               

               
Cow position:
               
chr1:68763642-68763866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
113, 7
               

               
Conread position:
               
26-264
               

               
Cow position:
               
chr1:28563523-28563761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
155, 81
               

               
Conread position:
               
26-309
               

               
Cow position:
               
chr1:4291210-4290919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 72
               

               
Conread position:
               
26-318
               

               
Cow position:
               
chr1:20205073-20204780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
113, 65
               

               
Conread position:
               
26-318
               

               
Cow position:
               
chr1:24534211-24534489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
113, 58
               

               
Conread position:
               
26-318
               

               
Cow position:
               
chr1:68276459-68276161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
111, 64
               

               
Conread position:
               
26-332
               

               
Cow position:
               
chr1:37321955-37322266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
117, 53
               

               
Conread position:
               
26-333
               

               
Cow position:
               
chr1:80988394-80988085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
113, 66
               

               
Conread position:
               
26-335
               

               
Cow position:
               
chr1:81290550-81290255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
26-364
               

               
Cow position:
               
chr1:57635505-57635175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 66
               

               
Conread position:
               
26-415
               

               
Cow position:
               
chr1:53458741-53458371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
38, 23
               

               
Conread position:
               
27-318
               

               
Cow position:
               
chr1:74822489-74822205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
206, 60
               

               
Conread position:
               
27-326
               

               
Cow position:
               
chr1:44165128-44164825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
112, 65
               

               
Conread position:
               
27-332
               

               
Cow position:
               
chr1:61741925-61742228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
205, 64
               

               
Conread position:
               
27-415
               

               
Cow position:
               
chr1:55163961-55163590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
112, 64
               

               
Conread position:
               
28-318
               

               
Cow position:
               
chr1:13547945-13548236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
111, 5
               

               
Conread position:
               
28-330
               

               
Cow position:
               
chr1:68826863-68827163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 69
               

               
Conread position:
               
29-176
               

               
Cow position:
               
chr1:55819098-55818961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
29-209
               

               
Cow position:
               
chr1:53369252-53369072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
38, 6
               

               
Conread position:
               
29-264
               

               
Cow position:
               
chr1:32001274-32001513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
89, 6
               

               
Conread position:
               
29-318
               

               
Cow position:
               
chr1:37706930-37707215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
171, 63
               

               
Conread position:
               
29-326
               

               
Cow position:
               
chr1:49796039-49795746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
188, 59
               

               
Conread position:
               
29-327
               

               
Cow position:
               
chr1:52206720-52206437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
111, 50
               

               
Conread position:
               
29-331
               

               
Cow position:
               
chr1:101822466-101822755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
110, 38
               

               
Conread position:
               
29-332
               

               
Cow position:
               
chr1:53495508-53495202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
110, 57
               

               
Conread position:
               
29-335
               

               
Cow position:
               
chr1:97820727-97820422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
201, 58
               

               
Conread position:
               
29-411
               

               
Cow position:
               
chr1:12870969-12871352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 63
               

               
Conread position:
               
29-415
               

               
Cow position:
               
chr1:64251005-64251400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 59
               

               
Conread position:
               
30-196
               

               
Cow position:
               
chr1:22394842-22394674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
30-229
               

               
Cow position:
               
chr1:41115676-41115868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
34, 59
               

               
Conread position:
               
30-240
               

               
Cow position:
               
chr1:95558076-95557872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
109, 58
               

               
Conread position:
               
30-245
               

               
Cow position:
               
chr1:59518961-59518751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
109, 63
               

               
Conread position:
               
30-248
               

               
Cow position:
               
chr1:96472478-96472279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
109, 47
               

               
Conread position:
               
30-254
               

               
Cow position:
               
chr1:24777950-24778161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
109, 55
               

               
Conread position:
               
30-293
               

               
Cow position:
               
chr1:52956297-52956038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 64
               

               
Conread position:
               
30-296
               

               
Cow position:
               
chr1:43389009-43389272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
109, 51
               

               
Conread position:
               
30-307
               

               
Cow position:
               
chr1:31234892-31235169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
109, 60
               

               
Conread position:
               
30-309
               

               
Cow position:
               
chr1:73561608-73561887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
151, 63
               

               
Conread position:
               
30-318
               

               
Cow position:
               
chr1:11853646-11853936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
109, 42
               

               
Conread position:
               
30-318
               

               
Cow position:
               
chr1:13414070-13413781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
109, 44
               

               
Conread position:
               
30-318
               

               
Cow position:
               
chr1:43839568-43839281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
111, 49
               

               
Conread position:
               
30-318
               

               
Cow position:
               
chr1:102349707-102350004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
60, 73
               

               
Conread position:
               
30-326
               

               
Cow position:
               
chr1:77462402-77462110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
109, 36
               

               
Conread position:
               
30-332
               

               
Cow position:
               
chr1:22448542-22448844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 70
               

               
Conread position:
               
30-332
               

               
Cow position:
               
chr1:43379985-43380289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 58
               

               
Conread position:
               
30-353
               

               
Cow position:
               
chr1:88618635-88618311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
154, 61
               

               
Conread position:
               
30-413
               

               
Cow position:
               
chr1:100552009-100551629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
109, 58
               

               
Conread position:
               
31-316
               

               
Cow position:
               
chr1:4573558-4573277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
108, 52
               

               
Conread position:
               
31-321
               

               
Cow position:
               
chr1:3244889-3244601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
22, 7
               

               
Conread position:
               
31-333
               

               
Cow position:
               
chr1:66138359-66138056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
108, 48
               

               
Conread position:
               
31-356
               

               
Cow position:
               
chr1:52774490-52774805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
65, 48
               

               
Conread position:
               
32-348
               

               
Cow position:
               
chr1:38544427-38544722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
107, 56
               

               
Conread position:
               
33-329
               

               
Cow position:
               
chr1:47009069-47008770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
106, 58
               

               
Conread position:
               
34-362
               

               
Cow position:
               
chr1:57263957-57264276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 51
               

               
Conread position:
               
34-414
               

               
Cow position:
               
chr1:3137961-3137592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 49
               

               
Conread position:
               
35-187
               

               
Cow position:
               
chr1:71716544-71716399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
104, 9
               

               
Conread position:
               
35-293
               

               
Cow position:
               
chr1:71953110-71952866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
207, 43
               

               
Conread position:
               
35-309
               

               
Cow position:
               
chr1:20002194-20002473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
72, 188
               

               
Conread position:
               
35-318
               

               
Cow position:
               
chr1:30034567-30034300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
155, 63
               

               
Conread position:
               
35-415
               

               
Cow position:
               
chr1:5162010-5162399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
105, 68
               

               
Conread position:
               
35-415
               

               
Cow position:
               
chr1:68445775-68446133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
153, 53
               

               
Conread position:
               
37-318
               

               
Cow position:
               
chr1:82505008-82504721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
100, 61
               

               
Conread position:
               
38-240
               

               
Cow position:
               
chr1:3243967-3243774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
101, 57
               

               
Conread position:
               
38-254
               

               
Cow position:
               
chr1:51684838-51684628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
101, 68
               

               
Conread position:
               
38-264
               

               
Cow position:
               
chr1:81471164-81470936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
101, 34
               

               
Conread position:
               
38-293
               

               
Cow position:
               
chr1:40600074-40599827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
9, 14
               

               
Conread position:
               
38-309
               

               
Cow position:
               
chr1:100512640-100512359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
72, 271
               

               
Conread position:
               
38-318
               

               
Cow position:
               
chr1:88971086-88970817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
156, 49
               

               
Conread position:
               
38-415
               

               
Cow position:
               
chr1:76222657-76223026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
96, 53
               

               
Conread position:
               
39-317
               

               
Cow position:
               
chr1:84239079-84239352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 57
               

               
Conread position:
               
39-318
               

               
Cow position:
               
chr1:3751908-3752189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
100, 49
               

               
Conread position:
               
39-368
               

               
Cow position:
               
chr1:102825789-102826108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
100, 21
               

               
Conread position:
               
39-415
               

               
Cow position:
               
chr1:22745655-22745292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
100, 55
               

               
Conread position:
               
40-245
               

               
Cow position:
               
chr1:64421360-64421166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
151, 53
               

               
Conread position:
               
40-287
               

               
Cow position:
               
chr1:68996209-68995956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
99, 48
               

               
Conread position:
               
40-332
               

               
Cow position:
               
chr1:82861810-82861513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
99, 53
               

               
Conread position:
               
40-356
               

               
Cow position:
               
chr1:11770263-11770576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 53
               

               
Conread position:
               
40-435
               

               
Cow position:
               
chr1:61391755-61392148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
99, 52
               

               
Conread position:
               
41-314
               

               
Cow position:
               
chr1:5409588-5409856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
98, 7
               

               
Conread position:
               
43-166
               

               
Cow position:
               
chr1:32788157-32788273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
44-294
               

               
Cow position:
               
chr1:22255395-22255160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
44-318
               

               
Cow position:
               
chr1:63240986-63240701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
43, 254
               

               
Conread position:
               
44-352
               

               
Cow position:
               
chr1:56643559-56643868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
7, 37
               

               
Conread position:
               
45-317
               

               
Cow position:
               
chr1:78783572-78783301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
139, 48
               

               
Conread position:
               
45-318
               

               
Cow position:
               
chr1:24655989-24655714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
95, 15
               

               
Conread position:
               
45-346
               

               
Cow position:
               
chr1:56748625-56748316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 62
               

               
Conread position:
               
46-296
               

               
Cow position:
               
chr1:4294083-4293838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
15, 45
               

               
Conread position:
               
46-332
               

               
Cow position:
               
chr1:666389-666100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
93, 47
               

               
Conread position:
               
46-332
               

               
Cow position:
               
chr1:84240915-84240640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 41
               

               
Conread position:
               
46-335
               

               
Cow position:
               
chr1:46886117-46885831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
18, 44
               

               
Conread position:
               
47-254
               

               
Cow position:
               
chr1:81638427-81638224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
92, 43
               

               
Conread position:
               
47-289
               

               
Cow position:
               
chr1:41954219-41954470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
91, 36
               

               
Conread position:
               
47-318
               

               
Cow position:
               
chr1:50679257-50679532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
92, 56
               

               
Conread position:
               
47-325
               

               
Cow position:
               
chr1:3776597-3776867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
134, 36
               

               
Conread position:
               
47-332
               

               
Cow position:
               
chr1:33811952-33811674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 55
               

               
Conread position:
               
47-332
               

               
Cow position:
               
chr1:61725092-61725373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
92, 41
               

               
Conread position:
               
47-415
               

               
Cow position:
               
chr1:78794714-78795088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
92, 41
               

               
Conread position:
               
49-231
               

               
Cow position:
               
chr1:85826367-85826191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
98, 40
               

               
Conread position:
               
51-334
               

               
Cow position:
               
chr1:56408637-56408351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
88, 27
               

               
Conread position:
               
51-342
               

               
Cow position:
               
chr1:97619811-97620110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
11, 51
               

               
Conread position:
               
51-412
               

               
Cow position:
               
chr1:16972822-16973183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
88, 11
               

               
Conread position:
               
52-264
               

               
Cow position:
               
chr1:56674109-56674322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
87, 39
               

               
Conread position:
               
52-292
               

               
Cow position:
               
chr1:98557767-98558004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
129, 36
               

               
Conread position:
               
52-307
               

               
Cow position:
               
chr1:64962650-64962890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
137, 43
               

               
Conread position:
               
52-311
               

               
Cow position:
               
chr1:94404231-94403977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
87, 27
               

               
Conread position:
               
52-333
               

               
Cow position:
               
chr1:1802158-1801883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
137, 54
               

               
Conread position:
               
55-226
               

               
Cow position:
               
chr1:70312791-70312955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
84, 36
               

               
Conread position:
               
55-296
               

               
Cow position:
               
chr1:53540405-53540166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
84, 24
               

               
Conread position:
               
55-303
               

               
Cow position:
               
chr1:78184711-78184472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
32, 46
               

               
Conread position:
               
55-311
               

               
Cow position:
               
chr1:95057068-95056816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
84, 22
               

               
Conread position:
               
55-318
               

               
Cow position:
               
chr1:11873347-11873601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
84, 32
               

               
Conread position:
               
55-332
               

               
Cow position:
               
chr1:82370758-82370491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
79, 37
               

               
Conread position:
               
55-346
               

               
Cow position:
               
chr1:71818447-71818737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
84, 33
               

               
Conread position:
               
55-415
               

               
Cow position:
               
chr1:3340952-3340595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 42
               

               
Conread position:
               
56-296
               

               
Cow position:
               
chr1:95050074-95050324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
83, 51
               

               
Conread position:
               
56-307
               

               
Cow position:
               
chr1:51818955-51818706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
83, 27
               

               
Conread position:
               
56-318
               

               
Cow position:
               
chr1:99095377-99095117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
83, 36
               

               
Conread position:
               
56-416
               

               
Cow position:
               
chr1:44836210-44836568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
125, 43
               

               
Conread position:
               
57-277
               

               
Cow position:
               
chr1:32013966-32013751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
82, 36
               

               
Conread position:
               
57-290
               

               
Cow position:
               
chr1:14981097-14981337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
42, 22
               

               
Conread position:
               
57-318
               

               
Cow position:
               
chr1:56658045-56657795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
82, 29
               

               
Conread position:
               
57-332
               

               
Cow position:
               
chr1:71946358-71946630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
82, 36
               

               
Conread position:
               
57-415
               

               
Cow position:
               
chr1:12595889-12596239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
82, 22
               

               
Conread position:
               
58-318
               

               
Cow position:
               
chr1:22467948-22467684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 35
               

               
Conread position:
               
59-318
               

               
Cow position:
               
chr1:91142138-91142400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
80, 65
               

               
Conread position:
               
62-240
               

               
Cow position:
               
chr1:75933282-75933108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
77, 24
               

               
Conread position:
               
62-273
               

               
Cow position:
               
chr1:89437931-89438137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
77, 31
               

               
Conread position:
               
62-332
               

               
Cow position:
               
chr1:29900958-29901217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
31, 90
               

               
Conread position:
               
63-316
               

               
Cow position:
               
chr1:101547017-101547286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
41, 243
               

               
Conread position:
               
63-318
               

               
Cow position:
               
chr1:41004354-41004613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
76, 30
               

               
Conread position:
               
63-349
               

               
Cow position:
               
chr1:3661058-3661333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
177, 25
               

               
Conread position:
               
63-414
               

               
Cow position:
               
chr1:5872961-5873307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
76, 34
               

               
Conread position:
               
64-338
               

               
Cow position:
               
chr1:13456148-13455877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
165, 15
               

               
Conread position:
               
66-330
               

               
Cow position:
               
chr1:98396957-98397222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
73, 28
               

               
Conread position:
               
67-290
               

               
Cow position:
               
chr1:45673717-45673493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
36, 19
               

               
Conread position:
               
74-316
               

               
Cow position:
               
chr1:98577498-98577231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
74-318
               

               
Cow position:
               
chr1:58419939-58419686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
65, 40
               

               
Conread position:
               
74-318
               

               
Cow position:
               
chr1:99637777-99638026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
118, 37
               

               
Conread position:
               
80-317
               

               
Cow position:
               
chr1:39248801-39249040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
59, 27
               

               
Conread position:
               
80-318
               

               
Cow position:
               
chr1:81277204-81277447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
7, 14
               

               
Conread position:
               
80-415
               

               
Cow position:
               
chr1:75443423-75443760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
7, 85
               

               
Conread position:
               
82-314
               

               
Cow position:
               
chr1:49839498-49839264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
57, 21
               

               
Conread position:
               
82-415
               

               
Cow position:
               
chr1:8532218-8532549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
28, 14
               

               
Conread position:
               
83-415
               

               
Cow position:
               
chr1:3456860-3456537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
145, 23
               

               
Conread position:
               
84-205
               

               
Cow position:
               
chr1:90595561-90595684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
55, 23
               

               
Conread position:
               
84-231
               

               
Cow position:
               
chr1:3167084-3167224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
84-317
               

               
Cow position:
               
chr1:6077890-6077649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
58, 13
               

               
Conread position:
               
84-318
               

               
Cow position:
               
chr1:29671532-29671770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
55, 30
               

               
Conread position:
               
84-329
               

               
Cow position:
               
chr1:29935395-29935638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
144, 30
               

               
Conread position:
               
85-264
               

               
Cow position:
               
chr1:102113115-102113301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
54, 21
               

               
Conread position:
               
85-308
               

               
Cow position:
               
chr1:102784946-102784724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
148, 11
               

               
Conread position:
               
85-318
               

               
Cow position:
               
chr1:11021019-11020789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
29, 43
               

               
Conread position:
               
85-318
               

               
Cow position:
               
chr1:14379544-14379776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
54, 32
               

               
Conread position:
               
85-332
               

               
Cow position:
               
chr1:79591099-79590840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
85-334
               

               
Cow position:
               
chr1:69678334-69678590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
10, 58
               

               
Conread position:
               
85-415
               

               
Cow position:
               
chr1:95499503-95499830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
54, 29
               

               
Conread position:
               
86-316
               

               
Cow position:
               
chr1:3035001-3035237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
87-210
               

               
Cow position:
               
chr1:13577401-13577524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
52, 12
               

               
Conread position:
               
87-245
               

               
Cow position:
               
chr1:101280730-101280885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
52, 39
               

               
Conread position:
               
87-296
               

               
Cow position:
               
chr1:22910361-22910149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
52, 104
               

               
Conread position:
               
87-314
               

               
Cow position:
               
chr1:28412351-28412567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
50, 26
               

               
Conread position:
               
87-318
               

               
Cow position:
               
chr1:23969049-23969283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
52, 10
               

               
Conread position:
               
87-332
               

               
Cow position:
               
chr1:57698459-57698716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
94, 20
               

               
Conread position:
               
87-335
               

               
Cow position:
               
chr1:33720108-33719851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
52, 47
               

               
Conread position:
               
87-415
               

               
Cow position:
               
chr1:96184030-96184343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
47, 10
               

               
Conread position:
               
87-434
               

               
Cow position:
               
chr1:98563152-98562806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
16, 28
               

               
Conread position:
               
88-296
               

               
Cow position:
               
chr1:5062015-5061797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
51, 26
               

               
Conread position:
               
88-316
               

               
Cow position:
               
chr1:51836560-51836327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
88-332
               

               
Cow position:
               
chr1:51628512-51628762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
51, 15
               

               
Conread position:
               
89-245
               

               
Cow position:
               
chr1:73536729-73536573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
17, 128
               

               
Conread position:
               
89-334
               

               
Cow position:
               
chr1:101129752-101129996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
76, 50
               

               
Conread position:
               
89-422
               

               
Cow position:
               
chr1:12678504-12678176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
31, 8
               

               
Conread position:
               
90-227
               

               
Cow position:
               
chr1:65909514-65909375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
90-318
               

               
Cow position:
               
chr1:4618875-4619115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
43, 26
               

               
Conread position:
               
90-332
               

               
Cow position:
               
chr1:72304391-72304631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
9, 18
               

               
Conread position:
               
90-334
               

               
Cow position:
               
chr1:85783511-85783264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
49, 59
               

               
Conread position:
               
91-245
               

               
Cow position:
               
chr1:9443863-9444014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
74, 51
               

               
Conread position:
               
91-290
               

               
Cow position:
               
chr1:20288104-20287896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
91-311
               

               
Cow position:
               
chr1:88529814-88530026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
48, 57
               

               
Conread position:
               
91-318
               

               
Cow position:
               
chr1:57637353-57637126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
8, 24
               

               
Conread position:
               
91-328
               

               
Cow position:
               
chr1:93499608-93499366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
48, 23
               

               
Conread position:
               
91-333
               

               
Cow position:
               
chr1:91039188-91039420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
14, 60
               

               
Conread position:
               
92-245
               

               
Cow position:
               
chr1:95178939-95178786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
47, 125
               

               
Conread position:
               
92-289
               

               
Cow position:
               
chr1:53613212-53613410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
43, 15
               

               
Conread position:
               
92-309
               

               
Cow position:
               
chr1:7442967-7442748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
47, 22
               

               
Conread position:
               
92-317
               

               
Cow position:
               
chr1:19998057-19998280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
47, 24
               

               
Conread position:
               
92-317
               

               
Cow position:
               
chr1:75967416-75967191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 144
               

               
Conread position:
               
92-318
               

               
Cow position:
               
chr1:4680110-4679887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
21, 86
               

               
Conread position:
               
92-318
               

               
Cow position:
               
chr1:34000896-34000659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
17, 8
               

               
Conread position:
               
92-326
               

               
Cow position:
               
chr1:46939873-46940116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
17, 64
               

               
Conread position:
               
92-330
               

               
Cow position:
               
chr1:87888385-87888143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
47, 111
               

               
Conread position:
               
92-332
               

               
Cow position:
               
chr1:1878013-1877767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
47, 7
               

               
Conread position:
               
92-360
               

               
Cow position:
               
chr1:63905489-63905762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 15
               

               
Conread position:
               
92-364
               

               
Cow position:
               
chr1:100537792-100537518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
125, 18
               

               
Conread position:
               
93-326
               

               
Cow position:
               
chr1:84116378-84116148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
91, 17
               

               
Conread position:
               
93-342
               

               
Cow position:
               
chr1:80555211-80555449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
46, 10
               

               
Conread position:
               
94-318
               

               
Cow position:
               
chr1:81472856-81472633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
45, 125
               

               
Conread position:
               
95-333
               

               
Cow position:
               
chr1:57575780-57576024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
44, 12
               

               
Conread position:
               
96-266
               

               
Cow position:
               
chr1:83593820-83594002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
96-308
               

               
Cow position:
               
chr1:15311849-15311632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
43, 11
               

               
Conread position:
               
97-252
               

               
Cow position:
               
chr1:91834208-91834053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
42, 28
               

               
Conread position:
               
97-330
               

               
Cow position:
               
chr1:79663690-79663924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
137, 10
               

               
Conread position:
               
97-332
               

               
Cow position:
               
chr1:23633931-23634160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
37, 53
               

               
Conread position:
               
97-415
               

               
Cow position:
               
chr1:12222624-12222940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
42, 244
               

               
Conread position:
               
97-415
               

               
Cow position:
               
chr1:78750707-78751037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
42, 269
               

               
Conread position:
               
98-414
               

               
Cow position:
               
chr1:27495464-27495164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
40, 52
               

               
Conread position:
               
100-240
               

               
Cow position:
               
chr1:32596434-32596289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
39, 14
               

               
Conread position:
               
100-405
               

               
Cow position:
               
chr1:94212207-94211909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
39, 25
               

               
Conread position:
               
101-259
               

               
Cow position:
               
chr1:60372287-60372447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
80, 41
               

               
Conread position:
               
101-335
               

               
Cow position:
               
chr1:98380596-98380840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
38, 112
               

               
Conread position:
               
102-279
               

               
Cow position:
               
chr1:62291714-62291893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
11, 117
               

               
Conread position:
               
102-356
               

               
Cow position:
               
chr1:21131120-21131371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
38, 95
               

               
Conread position:
               
103-318
               

               
Cow position:
               
chr1:33702092-33701874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
36, 31
               

               
Conread position:
               
104-279
               

               
Cow position:
               
chr1:72422600-72422775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
33, 160
               

               
Conread position:
               
104-328
               

               
Cow position:
               
chr1:731969-732181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
104-415
               

               
Cow position:
               
chr1:22628667-22628974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
35, 12
               

               
Conread position:
               
105-318
               

               
Cow position:
               
chr1:2075368-2075574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
34, 108
               

               
Conread position:
               
105-318
               

               
Cow position:
               
chr1:85361832-85361609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
34, 45
               

               
Conread position:
               
105-324
               

               
Cow position:
               
chr1:83982399-83982629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
34, 9
               

               
Conread position:
               
105-326
               

               
Cow position:
               
chr1:92370388-92370613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
34, 9
               

               
Conread position:
               
105-332
               

               
Cow position:
               
chr1:71748039-71748267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
34, 12
               

               
Conread position:
               
105-415
               

               
Cow position:
               
chr1:11772104-11772416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
76, 11
               

               
Conread position:
               
105-415
               

               
Cow position:
               
chr1:20125586-20125276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
30, 134
               

               
Conread position:
               
106-252
               

               
Cow position:
               
chr1:69540270-69540123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
108, 34
               

               
Conread position:
               
106-305
               

               
Cow position:
               
chr1:53410945-53411143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
33, 28
               

               
Conread position:
               
106-332
               

               
Cow position:
               
chr1:52506584-52506804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
33, 49
               

               
Conread position:
               
106-332
               

               
Cow position:
               
chr1:77099580-77099800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
186, 34
               

               
Conread position:
               
106-415
               

               
Cow position:
               
chr1:50634430-50634746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
33, 256
               

               
Conread position:
               
106-415
               

               
Cow position:
               
chr1:76850755-76851066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
33, 132
               

               
Conread position:
               
107-318
               

               
Cow position:
               
chr1:98708410-98708196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
107-326
               

               
Cow position:
               
chr1:37646032-37646255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
6, 133
               

               
Conread position:
               
107-326
               

               
Cow position:
               
chr1:95327181-95327407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
32, 48
               

               
Conread position:
               
107-330
               

               
Cow position:
               
chr1:42887297-42887521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
32, 48
               

               
Conread position:
               
107-413
               

               
Cow position:
               
chr1:56073491-56073801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
32, 36
               

               
Conread position:
               
107-415
               

               
Cow position:
               
chr1:81180002-81180320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
32, 241
               

               
Conread position:
               
108-317
               

               
Cow position:
               
chr1:68282772-68282549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
108-328
               

               
Cow position:
               
chr1:67014357-67014128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
21, 200
               

               
Conread position:
               
109-235
               

               
Cow position:
               
chr1:97938937-97938810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
30, 109
               

               
Conread position:
               
110-293
               

               
Cow position:
               
chr1:55194497-55194685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
29, 102
               

               
Conread position:
               
110-305
               

               
Cow position:
               
chr1:20799852-20799639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
29, 59
               

               
Conread position:
               
110-318
               

               
Cow position:
               
chr1:43211732-43211532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
29, 47
               

               
Conread position:
               
111-318
               

               
Cow position:
               
chr1:89395567-89395345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
111-334
               

               
Cow position:
               
chr1:97806754-97806530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
28, 162
               

               
Conread position:
               
112-240
               

               
Cow position:
               
chr1:7748185-7748053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
112-240
               

               
Cow position:
               
chr1:7752351-7752219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
114-311
               

               
Cow position:
               
chr1:89729011-89729195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
25, 101
               

               
Conread position:
               
114-318
               

               
Cow position:
               
chr1:42968352-42968562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
25, 75
               

               
Conread position:
               
114-415
               

               
Cow position:
               
chr1:67821248-67821553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
25, 91
               

               
Conread position:
               
115-365
               

               
Cow position:
               
chr1:57969092-57969334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
94, 25
               

               
Conread position:
               
116-318
               

               
Cow position:
               
chr1:21093053-21092845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
117-289
               

               
Cow position:
               
chr1:86484925-86484738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
117-327
               

               
Cow position:
               
chr1:61246199-61246406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
22, 100
               

               
Conread position:
               
117-332
               

               
Cow position:
               
chr1:71325288-71325507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
23, 10
               

               
Conread position:
               
117-347
               

               
Cow position:
               
chr1:3790106-3790331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
22, 87
               

               
Conread position:
               
118-318
               

               
Cow position:
               
chr1:57305790-57305586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
21, 71
               

               
Conread position:
               
119-415
               

               
Cow position:
               
chr1:88338646-88338362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
21, 36
               

               
Conread position:
               
121-318
               

               
Cow position:
               
chr1:36613319-36613521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
122-318
               

               
Cow position:
               
chr1:44136511-44136708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
123-263
               

               
Cow position:
               
chr1:7450084-7449941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
123-314
               

               
Cow position:
               
chr1:54732514-54732699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
17, 70
               

               
Conread position:
               
124-318
               

               
Cow position:
               
chr1:24528655-24528844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
17, 89
               

               
Conread position:
               
127-307
               

               
Cow position:
               
chr1:19545149-19545334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
12, 177
               

               
Conread position:
               
127-307
               

               
Cow position:
               
chr1:39702771-39702595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
12, 35
               

               
Conread position:
               
127-317
               

               
Cow position:
               
chr1:43893874-43893683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
104, 61
               

               
Conread position:
               
127-318
               

               
Cow position:
               
chr1:92551185-92551381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
12, 18
               

               
Conread position:
               
127-321
               

               
Cow position:
               
chr1:30504421-30504222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
12, 177
               

               
Conread position:
               
127-328
               

               
Cow position:
               
chr1:58889345-58889551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
12, 38
               

               
Conread position:
               
128-311
               

               
Cow position:
               
chr1:19516456-19516645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
11, 28
               

               
Conread position:
               
128-318
               

               
Cow position:
               
chr1:64160289-64160095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
11, 175
               

               
Conread position:
               
129-334
               

               
Cow position:
               
chr1:31347968-31348170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
10, 85
               

               
Conread position:
               
130-415
               

               
Cow position:
               
chr1:52496730-52496441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
9, 171
               

               
Conread position:
               
131-318
               

               
Cow position:
               
chr1:84786721-84786525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
8, 46
               

               
Conread position:
               
132-332
               

               
Cow position:
               
chr1:52488018-52488218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
56, 5
               

               
Conread position:
               
133-318
               

               
Cow position:
               
chr1:99118333-99118139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
6, 17
               

               
Conread position:
               
137-324
               

               
Cow position:
               
chr1:3757895-3757700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
137-339
               

               
Cow position:
               
chr1:25856625-25856422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
26, 62
               

               
Conread position:
               
138-332
               

               
Cow position:
               
chr1:55686279-55686479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
94, 155
               

               
Conread position:
               
139-309
               

               
Cow position:
               
chr1:32631404-32631229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
139-316
               

               
Cow position:
               
chr1:74013322-74013511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
139-318
               

               
Cow position:
               
chr1:33717165-33716975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
146-306
               

               
Cow position:
               
chr1:99543119-99543283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
150-318
               

               
Cow position:
               
chr1:40062378-40062202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
150-327
               

               
Cow position:
               
chr1:67916963-67916781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
30, 72
               

               
Conread position:
               
150-363
               

               
Cow position:
               
chr1:52912950-52913153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
114, 19
               

               
Conread position:
               
151-332
               

               
Cow position:
               
chr1:5990837-5990654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
37, 5
               

               
Conread position:
               
152-318
               

               
Cow position:
               
chr1:24201823-24201985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
29, 78
               

               
Conread position:
               
152-318
               

               
Cow position:
               
chr1:73757012-73756847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
115, 64
               

               
Conread position:
               
152-358
               

               
Cow position:
               
chr1:92517650-92517847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
29, 74
               

               
Conread position:
               
153-318
               

               
Cow position:
               
chr1:95071907-95071740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
86, 28
               

               
Conread position:
               
156-316
               

               
Cow position:
               
chr1:22227764-22227613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
156-318
               

               
Cow position:
               
chr1:24225584-24225742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
80, 32
               

               
Conread position:
               
160-318
               

               
Cow position:
               
chr1:26159512-26159678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
161-317
               

               
Cow position:
               
chr1:56229166-56229009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
81, 53
               

               
Conread position:
               
163-414
               

               
Cow position:
               
chr1:15028593-15028343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
86, 133
               

               
Conread position:
               
166-318
               

               
Cow position:
               
chr1:58439140-58439292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
64, 82
               

               
Conread position:
               
168-332
               

               
Cow position:
               
chr1:61304589-61304421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
169-310
               

               
Cow position:
               
chr1:62996401-62996257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
70, 133
               

               
Conread position:
               
169-317
               

               
Cow position:
               
chr1:3872758-3872606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
169-330
               

               
Cow position:
               
chr1:3076490-3076649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
169-330
               

               
Cow position:
               
chr1:101714028-101713858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
169-332
               

               
Cow position:
               
chr1:52563888-52564052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
16, 97
               

               
Conread position:
               
171-413
               

               
Cow position:
               
chr1:46821913-46821681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
65, 11
               

               
Conread position:
               
173-317
               

               
Cow position:
               
chr1:94378935-94378787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
57, 79
               

               
Conread position:
               
173-338
               

               
Cow position:
               
chr1:52510340-52510509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
173-357
               

               
Cow position:
               
chr1:86020160-86020352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
60, 6
               

               
Conread position:
               
173-358
               

               
Cow position:
               
chr1:15367050-15367235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
76, 15
               

               
Conread position:
               
173-415
               

               
Cow position:
               
chr1:65144558-65144807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
175-318
               

               
Cow position:
               
chr1:54294756-54294908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
175-318
               

               
Cow position:
               
chr1:81579667-81579517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
179-355
               

               
Cow position:
               
chr1:101852177-101852357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
52, 14
               

               
Conread position:
               
179-358
               

               
Cow position:
               
chr1:57981650-57981835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
54, 127
               

               
Conread position:
               
189-415
               

               
Cow position:
               
chr1:72813298-72813080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
193-367
               

               
Cow position:
               
chr1:98023511-98023690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
213-368
               

               
Cow position:
               
chr1:10881682-10881522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
21, 115
               
Show alignments to all cow chromosomes.