• Home
• Research
• Resources
• Publications
• About
• People
• Events
• Jobs
• News
• Contact

Cow genome map

           
Conread name:
           
Tra1-TCH01A110102
        

               
Conread position:
               
1-209
               

               
Cow position:
               
chr11:55494726-55494522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
9, 80
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr11:33348140-33348418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
9, 75
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr11:77750725-77751014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
19, 74
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr11:18144771-18145074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
5, 75
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chr11:51043888-51044207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
140, 22
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chr11:58588391-58588073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 92
               

               
Conread position:
               
1-318
               

               
Cow position:
               
chr11:18588539-18588852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
9, 88
               

               
Conread position:
               
1-318
               

               
Cow position:
               
chr11:19487434-19487747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
9, 84
               

               
Conread position:
               
1-318
               

               
Cow position:
               
chr11:34616306-34615997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
9, 90
               

               
Conread position:
               
1-318
               

               
Cow position:
               
chr11:43524655-43524351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
9, 80
               

               
Conread position:
               
1-318
               

               
Cow position:
               
chr11:63847893-63847580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
9, 99
               

               
Conread position:
               
1-320
               

               
Cow position:
               
chr11:29916588-29916263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
9, 183
               

               
Conread position:
               
1-332
               

               
Cow position:
               
chr11:41811868-41812197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
9, 78
               

               
Conread position:
               
1-335
               

               
Cow position:
               
chr11:8496079-8495749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
9, 65
               

               
Conread position:
               
1-415
               

               
Cow position:
               
chr11:45282975-45282576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
9, 88
               

               
Conread position:
               
2-293
               

               
Cow position:
               
chr11:2084187-2083901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
135, 86
               

               
Conread position:
               
2-318
               

               
Cow position:
               
chr11:11752473-11752790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
137, 77
               

               
Conread position:
               
2-318
               

               
Cow position:
               
chr11:63519045-63518743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
137, 77
               

               
Conread position:
               
3-232
               

               
Cow position:
               
chr11:71341422-71341632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
136, 80
               

               
Conread position:
               
3-317
               

               
Cow position:
               
chr11:65988267-65987960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
136, 42
               

               
Conread position:
               
3-318
               

               
Cow position:
               
chr11:12949904-12950213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
43, 34
               

               
Conread position:
               
3-318
               

               
Cow position:
               
chr11:16000968-16000657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
136, 41
               

               
Conread position:
               
3-318
               

               
Cow position:
               
chr11:56821200-56821527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
49, 95
               

               
Conread position:
               
3-331
               

               
Cow position:
               
chr11:1849128-1849448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
56, 49
               

               
Conread position:
               
4-243
               

               
Cow position:
               
chr11:57170788-57171018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
135, 84
               

               
Conread position:
               
4-335
               

               
Cow position:
               
chr11:14649272-14649601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
135, 73
               

               
Conread position:
               
4-415
               

               
Cow position:
               
chr11:35580302-35579894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
70, 88
               

               
Conread position:
               
7-136
               

               
Cow position:
               
chr11:41313618-41313740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
7-137
               

               
Cow position:
               
chr11:84890678-84890805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
7-180
               

               
Cow position:
               
chr11:31506888-31506717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
116, 83
               

               
Conread position:
               
7-210
               

               
Cow position:
               
chr11:6202481-6202288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
132, 79
               

               
Conread position:
               
7-222
               

               
Cow position:
               
chr11:41175910-41176120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
132, 83
               

               
Conread position:
               
7-224
               

               
Cow position:
               
chr11:16540901-16540690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
132, 72
               

               
Conread position:
               
7-234
               

               
Cow position:
               
chr11:77683212-77682984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
18, 55
               

               
Conread position:
               
7-245
               

               
Cow position:
               
chr11:36238816-36238591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
132, 22
               

               
Conread position:
               
7-264
               

               
Cow position:
               
chr11:61858864-61859117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
132, 84
               

               
Conread position:
               
7-269
               

               
Cow position:
               
chr11:69810941-69810681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
223, 82
               

               
Conread position:
               
7-273
               

               
Cow position:
               
chr11:64044272-64044012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
132, 75
               

               
Conread position:
               
7-293
               

               
Cow position:
               
chr11:8147860-8148133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 70
               

               
Conread position:
               
7-296
               

               
Cow position:
               
chr11:3726327-3726036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
131, 97
               

               
Conread position:
               
7-311
               

               
Cow position:
               
chr11:17192241-17192546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
132, 39
               

               
Conread position:
               
7-316
               

               
Cow position:
               
chr11:65409115-65409427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
132, 31
               

               
Conread position:
               
7-318
               

               
Cow position:
               
chr11:9088259-9088566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
131, 65
               

               
Conread position:
               
7-318
               

               
Cow position:
               
chr11:51144752-51144446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 47
               

               
Conread position:
               
7-318
               

               
Cow position:
               
chr11:51687689-51687997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
132, 7
               

               
Conread position:
               
7-318
               

               
Cow position:
               
chr11:67745360-67745056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
132, 38
               

               
Conread position:
               
7-326
               

               
Cow position:
               
chr11:18698918-18698595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 73
               

               
Conread position:
               
7-327
               

               
Cow position:
               
chr11:25331706-25332009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
132, 33
               

               
Conread position:
               
7-330
               

               
Cow position:
               
chr11:56892856-56892536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
116, 28
               

               
Conread position:
               
7-331
               

               
Cow position:
               
chr11:28691715-28692036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
40, 70
               

               
Conread position:
               
7-332
               

               
Cow position:
               
chr11:34963108-34962777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 18
               

               
Conread position:
               
7-333
               

               
Cow position:
               
chr11:53452310-53452632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
132, 38
               

               
Conread position:
               
7-343
               

               
Cow position:
               
chr11:14949370-14949703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
181, 31
               

               
Conread position:
               
7-344
               

               
Cow position:
               
chr11:18630497-18630157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
13, 26
               

               
Conread position:
               
7-346
               

               
Cow position:
               
chr11:46705502-46705822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
39, 30
               

               
Conread position:
               
7-347
               

               
Cow position:
               
chr11:30721137-30720796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
174, 104
               

               
Conread position:
               
7-352
               

               
Cow position:
               
chr11:81162394-81162738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
136, 72
               

               
Conread position:
               
7-354
               

               
Cow position:
               
chr11:67600823-67600460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 85
               

               
Conread position:
               
7-415
               

               
Cow position:
               
chr11:27681540-27681140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
133, 72
               

               
Conread position:
               
7-415
               

               
Cow position:
               
chr11:35881949-35881546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
132, 45
               

               
Conread position:
               
7-415
               

               
Cow position:
               
chr11:42232645-42232252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
132, 26
               

               
Conread position:
               
7-415
               

               
Cow position:
               
chr11:43594034-43593632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
132, 48
               

               
Conread position:
               
8-240
               

               
Cow position:
               
chr11:65607651-65607879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 85
               

               
Conread position:
               
8-311
               

               
Cow position:
               
chr11:19238122-19238421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
131, 29
               

               
Conread position:
               
8-318
               

               
Cow position:
               
chr11:56518272-56518584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 35
               

               
Conread position:
               
8-415
               

               
Cow position:
               
chr11:23251556-23251964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
131, 30
               

               
Conread position:
               
9-142
               

               
Cow position:
               
chr11:32398673-32398546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
130, 14
               

               
Conread position:
               
9-178
               

               
Cow position:
               
chr11:33345482-33345317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
126, 79
               

               
Conread position:
               
9-179
               

               
Cow position:
               
chr11:47837356-47837186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
115, 45
               

               
Conread position:
               
9-185
               

               
Cow position:
               
chr11:56734666-56734496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
115, 32
               

               
Conread position:
               
9-186
               

               
Cow position:
               
chr11:30787260-30787083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
59, 133
               

               
Conread position:
               
9-186
               

               
Cow position:
               
chr11:70756514-70756348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
130, 34
               

               
Conread position:
               
9-190
               

               
Cow position:
               
chr11:48659971-48659793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
130, 79
               

               
Conread position:
               
9-190
               

               
Cow position:
               
chr11:52690484-52690661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
126, 16
               

               
Conread position:
               
9-190
               

               
Cow position:
               
chr11:70206357-70206184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
130, 63
               

               
Conread position:
               
9-200
               

               
Cow position:
               
chr11:67246822-67246644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
130, 16
               

               
Conread position:
               
9-201
               

               
Cow position:
               
chr11:4652936-4653126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
150, 78
               

               
Conread position:
               
9-201
               

               
Cow position:
               
chr11:6633747-6633562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
9-204
               

               
Cow position:
               
chr11:32254180-32254371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
128, 84
               

               
Conread position:
               
9-204
               

               
Cow position:
               
chr11:35775374-35775186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
41, 47
               

               
Conread position:
               
9-205
               

               
Cow position:
               
chr11:28993701-28993885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
130, 63
               

               
Conread position:
               
9-205
               

               
Cow position:
               
chr11:70278076-70278262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
130, 63
               

               
Conread position:
               
9-209
               

               
Cow position:
               
chr11:21852265-21852461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
128, 85
               

               
Conread position:
               
9-214
               

               
Cow position:
               
chr11:51729323-51729126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
130, 78
               

               
Conread position:
               
9-219
               

               
Cow position:
               
chr11:8544981-8545180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
130, 28
               

               
Conread position:
               
9-221
               

               
Cow position:
               
chr11:75874718-75874921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
130, 83
               

               
Conread position:
               
9-222
               

               
Cow position:
               
chr11:16907014-16907213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
33, 20
               

               
Conread position:
               
9-230
               

               
Cow position:
               
chr11:34646626-34646413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
176, 70
               

               
Conread position:
               
9-231
               

               
Cow position:
               
chr11:47004385-47004171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
9-231
               

               
Cow position:
               
chr11:67136394-67136619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
130, 20
               

               
Conread position:
               
9-232
               

               
Cow position:
               
chr11:83687397-83687608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
170, 84
               

               
Conread position:
               
9-233
               

               
Cow position:
               
chr11:9270689-9270909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
130, 29
               

               
Conread position:
               
9-235
               

               
Cow position:
               
chr11:61958707-61958930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
130, 84
               

               
Conread position:
               
9-236
               

               
Cow position:
               
chr11:21438245-21438031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
132, 79
               

               
Conread position:
               
9-240
               

               
Cow position:
               
chr11:13592772-13592548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
129, 78
               

               
Conread position:
               
9-240
               

               
Cow position:
               
chr11:19591958-19592183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
130, 54
               

               
Conread position:
               
9-240
               

               
Cow position:
               
chr11:20684535-20684765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
128, 78
               

               
Conread position:
               
9-240
               

               
Cow position:
               
chr11:27932312-27932080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
82, 128
               

               
Conread position:
               
9-240
               

               
Cow position:
               
chr11:37804517-37804743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
130, 83
               

               
Conread position:
               
9-240
               

               
Cow position:
               
chr11:38670718-38670494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
130, 29
               

               
Conread position:
               
9-240
               

               
Cow position:
               
chr11:72375646-72375874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
130, 81
               

               
Conread position:
               
9-241
               

               
Cow position:
               
chr11:60143265-60143488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
179, 7
               

               
Conread position:
               
9-243
               

               
Cow position:
               
chr11:30955037-30954807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
130, 73
               

               
Conread position:
               
9-245
               

               
Cow position:
               
chr11:27913321-27913080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
84, 144
               

               
Conread position:
               
9-245
               

               
Cow position:
               
chr11:49231910-49231684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
129, 78
               

               
Conread position:
               
9-245
               

               
Cow position:
               
chr11:63434021-63434248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
130, 77
               

               
Conread position:
               
9-245
               

               
Cow position:
               
chr11:71492825-71493050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
130, 29
               

               
Conread position:
               
9-246
               

               
Cow position:
               
chr11:48041996-48042234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
35, 98
               

               
Conread position:
               
9-247
               

               
Cow position:
               
chr11:63909630-63909853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
130, 18
               

               
Conread position:
               
9-257
               

               
Cow position:
               
chr11:36286732-36286488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
130, 75
               

               
Conread position:
               
9-259
               

               
Cow position:
               
chr11:4207348-4207100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
233, 78
               

               
Conread position:
               
9-261
               

               
Cow position:
               
chr11:2811693-2811938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 84
               

               
Conread position:
               
9-261
               

               
Cow position:
               
chr11:38874365-38874617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
122, 75
               

               
Conread position:
               
9-262
               

               
Cow position:
               
chr11:36114193-36113942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
130, 69
               

               
Conread position:
               
9-263
               

               
Cow position:
               
chr11:11558208-11557952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
30, 45
               

               
Conread position:
               
9-263
               

               
Cow position:
               
chr11:52983712-52983474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
130, 82
               

               
Conread position:
               
9-264
               

               
Cow position:
               
chr11:16232900-16233148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
9-268
               

               
Cow position:
               
chr11:81406132-81406379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
130, 34
               

               
Conread position:
               
9-269
               

               
Cow position:
               
chr11:41215769-41215526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
130, 63
               

               
Conread position:
               
9-279
               

               
Cow position:
               
chr11:36112456-36112185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
126, 26
               

               
Conread position:
               
9-279
               

               
Cow position:
               
chr11:62620413-62620152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
130, 83
               

               
Conread position:
               
9-280
               

               
Cow position:
               
chr11:32436371-32436095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 77
               

               
Conread position:
               
9-280
               

               
Cow position:
               
chr11:42043959-42044224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
225, 26
               

               
Conread position:
               
9-282
               

               
Cow position:
               
chr11:34121235-34120962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
219, 82
               

               
Conread position:
               
9-282
               

               
Cow position:
               
chr11:48544474-48544207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
42, 74
               

               
Conread position:
               
9-288
               

               
Cow position:
               
chr11:26144059-26144326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
128, 75
               

               
Conread position:
               
9-289
               

               
Cow position:
               
chr11:82940588-82940860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
130, 26
               

               
Conread position:
               
9-293
               

               
Cow position:
               
chr11:2917549-2917826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
130, 70
               

               
Conread position:
               
9-293
               

               
Cow position:
               
chr11:81281994-81281698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
9-296
               

               
Cow position:
               
chr11:4663010-4663289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
130, 78
               

               
Conread position:
               
9-296
               

               
Cow position:
               
chr11:13043109-13043391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 75
               

               
Conread position:
               
9-296
               

               
Cow position:
               
chr11:16342192-16342491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
131, 70
               

               
Conread position:
               
9-296
               

               
Cow position:
               
chr11:35153787-35154077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
130, 58
               

               
Conread position:
               
9-296
               

               
Cow position:
               
chr11:64905035-64904746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
49, 69
               

               
Conread position:
               
9-296
               

               
Cow position:
               
chr11:87155556-87155266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
127, 29
               

               
Conread position:
               
9-300
               

               
Cow position:
               
chr11:66188280-66188575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 80
               

               
Conread position:
               
9-303
               

               
Cow position:
               
chr11:33311010-33310714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 93
               

               
Conread position:
               
9-308
               

               
Cow position:
               
chr11:30597030-30596735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 98
               

               
Conread position:
               
9-309
               

               
Cow position:
               
chr11:14094383-14094685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
11, 18
               

               
Conread position:
               
9-309
               

               
Cow position:
               
chr11:70836339-70836630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
206, 84
               

               
Conread position:
               
9-311
               

               
Cow position:
               
chr11:27746960-27746653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
128, 70
               

               
Conread position:
               
9-311
               

               
Cow position:
               
chr11:39499393-39499112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
9-311
               

               
Cow position:
               
chr11:63482393-63482690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
130, 26
               

               
Conread position:
               
9-312
               

               
Cow position:
               
chr11:47545168-47544862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
130, 19
               

               
Conread position:
               
9-314
               

               
Cow position:
               
chr11:35347716-35348025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
130, 74
               

               
Conread position:
               
9-314
               

               
Cow position:
               
chr11:45872274-45872584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
88, 65
               

               
Conread position:
               
9-315
               

               
Cow position:
               
chr11:34032166-34032464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 14
               

               
Conread position:
               
9-316
               

               
Cow position:
               
chr11:45898013-45898325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
33, 81
               

               
Conread position:
               
9-316
               

               
Cow position:
               
chr11:46747824-46748138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
132, 92
               

               
Conread position:
               
9-316
               

               
Cow position:
               
chr11:65159416-65159715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
78, 59
               

               
Conread position:
               
9-317
               

               
Cow position:
               
chr11:19247163-19247466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
130, 23
               

               
Conread position:
               
9-317
               

               
Cow position:
               
chr11:32378224-32377917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
130, 21
               

               
Conread position:
               
9-317
               

               
Cow position:
               
chr11:38236288-38235973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
82, 113
               

               
Conread position:
               
9-317
               

               
Cow position:
               
chr11:44222922-44222630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
272, 36
               

               
Conread position:
               
9-317
               

               
Cow position:
               
chr11:80787870-80788181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
135, 78
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr11:4674409-4674722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
76, 81
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr11:6233843-6234150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
130, 84
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr11:8339369-8339676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 78
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr11:15504149-15503829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
105, 63
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr11:17227608-17227911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
77, 21
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr11:17278639-17278933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
183, 26
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr11:17831185-17831499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
130, 34
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr11:25387105-25386799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
27, 72
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr11:26483748-26483448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 28
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr11:27386302-27386611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 78
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr11:30120625-30120934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
62, 28
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr11:30476031-30475728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
31, 63
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr11:33341108-33341417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 84
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr11:36647380-36647089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
222, 26
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr11:41272174-41271866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
130, 47
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr11:45631729-45632036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
131, 28
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr11:52380835-52381142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
134, 87
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr11:53778653-53778341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 75
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr11:55744504-55744202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
172, 69
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr11:61454480-61454806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 17
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr11:64638489-64638795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 27
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr11:66041315-66041002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
56, 41
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr11:70483815-70484133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
94, 70
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr11:71868566-71868875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
130, 81
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr11:76369486-76369793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
131, 91
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr11:79728631-79728945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 81
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr11:83230364-83230656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
228, 40
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chr11:84385602-84385915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
130, 34
               

               
Conread position:
               
9-325
               

               
Cow position:
               
chr11:41986009-41986322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
130, 82
               

               
Conread position:
               
9-326
               

               
Cow position:
               
chr11:18572837-18572524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 38
               

               
Conread position:
               
9-326
               

               
Cow position:
               
chr11:42016603-42016918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
63, 23
               

               
Conread position:
               
9-326
               

               
Cow position:
               
chr11:54334365-54334055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
130, 70
               

               
Conread position:
               
9-327
               

               
Cow position:
               
chr11:50951594-50951270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
130, 70
               

               
Conread position:
               
9-328
               

               
Cow position:
               
chr11:22977837-22978138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
9-328
               

               
Cow position:
               
chr11:23232478-23232796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 89
               

               
Conread position:
               
9-328
               

               
Cow position:
               
chr11:55761905-55761598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 75
               

               
Conread position:
               
9-330
               

               
Cow position:
               
chr11:20602264-20601956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 71
               

               
Conread position:
               
9-330
               

               
Cow position:
               
chr11:29946877-29947210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 191
               

               
Conread position:
               
9-330
               

               
Cow position:
               
chr11:70273343-70273018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
130, 79
               

               
Conread position:
               
9-331
               

               
Cow position:
               
chr11:36981600-36981283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
177, 77
               

               
Conread position:
               
9-331
               

               
Cow position:
               
chr11:40258375-40258682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 16
               

               
Conread position:
               
9-331
               

               
Cow position:
               
chr11:48272237-48271911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 70
               

               
Conread position:
               
9-331
               

               
Cow position:
               
chr11:65431091-65430780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
130, 54
               

               
Conread position:
               
9-331
               

               
Cow position:
               
chr11:71168553-71168862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
129, 75
               

               
Conread position:
               
9-332
               

               
Cow position:
               
chr11:41214-40896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
224, 46
               

               
Conread position:
               
9-332
               

               
Cow position:
               
chr11:439626-439944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
54, 70
               

               
Conread position:
               
9-332
               

               
Cow position:
               
chr11:2788430-2788094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
9-332
               

               
Cow position:
               
chr11:8840711-8841026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 29
               

               
Conread position:
               
9-332
               

               
Cow position:
               
chr11:28644124-28643796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
131, 83
               

               
Conread position:
               
9-332
               

               
Cow position:
               
chr11:33753872-33754184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 28
               

               
Conread position:
               
9-332
               

               
Cow position:
               
chr11:38639148-38638837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 55
               

               
Conread position:
               
9-332
               

               
Cow position:
               
chr11:40459144-40458835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
128, 79
               

               
Conread position:
               
9-332
               

               
Cow position:
               
chr11:40467089-40467409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
130, 72
               

               
Conread position:
               
9-332
               

               
Cow position:
               
chr11:40792668-40792986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
43, 83
               

               
Conread position:
               
9-332
               

               
Cow position:
               
chr11:44636717-44637046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
100, 68
               

               
Conread position:
               
9-332
               

               
Cow position:
               
chr11:83357431-83357107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
69, 21
               

               
Conread position:
               
9-333
               

               
Cow position:
               
chr11:1380712-1380408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
37, 28
               

               
Conread position:
               
9-333
               

               
Cow position:
               
chr11:53147500-53147826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
130, 26
               

               
Conread position:
               
9-333
               

               
Cow position:
               
chr11:61137138-61137484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
84, 246
               

               
Conread position:
               
9-334
               

               
Cow position:
               
chr11:67804786-67804465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
130, 76
               

               
Conread position:
               
9-334
               

               
Cow position:
               
chr11:77745215-77745541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 92
               

               
Conread position:
               
9-335
               

               
Cow position:
               
chr11:32595494-32595178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
130, 69
               

               
Conread position:
               
9-335
               

               
Cow position:
               
chr11:33414273-33413945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
36, 26
               

               
Conread position:
               
9-335
               

               
Cow position:
               
chr11:52297184-52297512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
57, 40
               

               
Conread position:
               
9-335
               

               
Cow position:
               
chr11:73512406-73512708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
130, 65
               

               
Conread position:
               
9-336
               

               
Cow position:
               
chr11:49934694-49935033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 90
               

               
Conread position:
               
9-338
               

               
Cow position:
               
chr11:18371402-18371731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
167, 102
               

               
Conread position:
               
9-344
               

               
Cow position:
               
chr11:4436356-4436035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
130, 77
               

               
Conread position:
               
9-349
               

               
Cow position:
               
chr11:11125700-11125357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 82
               

               
Conread position:
               
9-350
               

               
Cow position:
               
chr11:21844100-21844436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
130, 26
               

               
Conread position:
               
9-357
               

               
Cow position:
               
chr11:9221695-9222036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 41
               

               
Conread position:
               
9-360
               

               
Cow position:
               
chr11:10620291-10620639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
29, 77
               

               
Conread position:
               
9-362
               

               
Cow position:
               
chr11:42002911-42003270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
130, 51
               

               
Conread position:
               
9-367
               

               
Cow position:
               
chr11:65826714-65827052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 77
               

               
Conread position:
               
9-368
               

               
Cow position:
               
chr11:20491606-20491252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 40
               

               
Conread position:
               
9-368
               

               
Cow position:
               
chr11:56654592-56654227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 103
               

               
Conread position:
               
9-414
               

               
Cow position:
               
chr11:16910322-16910728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
34, 85
               

               
Conread position:
               
9-414
               

               
Cow position:
               
chr11:42359151-42358765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
283, 91
               

               
Conread position:
               
9-414
               

               
Cow position:
               
chr11:67747321-67746918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
130, 70
               

               
Conread position:
               
9-415
               

               
Cow position:
               
chr11:5031739-5032137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 26
               

               
Conread position:
               
9-415
               

               
Cow position:
               
chr11:17889694-17890082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
132, 79
               

               
Conread position:
               
9-415
               

               
Cow position:
               
chr11:22931934-22932336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 139
               

               
Conread position:
               
9-415
               

               
Cow position:
               
chr11:23138018-23138432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 42
               

               
Conread position:
               
9-415
               

               
Cow position:
               
chr11:30708543-30708132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 74
               

               
Conread position:
               
9-415
               

               
Cow position:
               
chr11:31352515-31352931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
85, 314
               

               
Conread position:
               
9-415
               

               
Cow position:
               
chr11:34113302-34112903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 75
               

               
Conread position:
               
9-415
               

               
Cow position:
               
chr11:43430420-43430818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
240, 20
               

               
Conread position:
               
9-415
               

               
Cow position:
               
chr11:48672749-48672348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
130, 46
               

               
Conread position:
               
9-415
               

               
Cow position:
               
chr11:49152985-49152580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 17
               

               
Conread position:
               
9-415
               

               
Cow position:
               
chr11:77705791-77705404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 26
               

               
Conread position:
               
9-416
               

               
Cow position:
               
chr11:43898175-43897774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
132, 40
               

               
Conread position:
               
9-416
               

               
Cow position:
               
chr11:44234392-44233996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
87, 70
               

               
Conread position:
               
9-422
               

               
Cow position:
               
chr11:30192215-30191796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
102, 45
               

               
Conread position:
               
9-432
               

               
Cow position:
               
chr11:3393172-3393587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
219, 84
               

               
Conread position:
               
10-153
               

               
Cow position:
               
chr11:12368736-12368595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
129, 88
               

               
Conread position:
               
10-275
               

               
Cow position:
               
chr11:18591398-18591662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
129, 69
               

               
Conread position:
               
10-289
               

               
Cow position:
               
chr11:57724789-57725071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
127, 68
               

               
Conread position:
               
10-293
               

               
Cow position:
               
chr11:30638914-30639195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
171, 69
               

               
Conread position:
               
10-304
               

               
Cow position:
               
chr11:77128696-77128411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 137
               

               
Conread position:
               
10-311
               

               
Cow position:
               
chr11:16261989-16262296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
129, 74
               

               
Conread position:
               
10-317
               

               
Cow position:
               
chr11:81300585-81300883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
129, 62
               

               
Conread position:
               
10-318
               

               
Cow position:
               
chr11:21798965-21798680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 35
               

               
Conread position:
               
10-318
               

               
Cow position:
               
chr11:26535822-26535504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
57, 25
               

               
Conread position:
               
10-318
               

               
Cow position:
               
chr11:62155674-62155359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 293
               

               
Conread position:
               
10-324
               

               
Cow position:
               
chr11:31413494-31413173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
33, 78
               

               
Conread position:
               
10-326
               

               
Cow position:
               
chr11:76606708-76606410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
229, 74
               

               
Conread position:
               
10-328
               

               
Cow position:
               
chr11:61203201-61202881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
129, 82
               

               
Conread position:
               
10-368
               

               
Cow position:
               
chr11:40478817-40479177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
129, 79
               

               
Conread position:
               
11-159
               

               
Cow position:
               
chr11:75965617-75965757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
128, 74
               

               
Conread position:
               
11-193
               

               
Cow position:
               
chr11:48429145-48428964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
83, 39
               

               
Conread position:
               
11-204
               

               
Cow position:
               
chr11:48306312-48306496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
128, 77
               

               
Conread position:
               
11-205
               

               
Cow position:
               
chr11:63435555-63435364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
128, 21
               

               
Conread position:
               
11-212
               

               
Cow position:
               
chr11:17493513-17493318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
11-226
               

               
Cow position:
               
chr11:71009163-71008961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
128, 24
               

               
Conread position:
               
11-227
               

               
Cow position:
               
chr11:30830579-30830791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
128, 68
               

               
Conread position:
               
11-232
               

               
Cow position:
               
chr11:15772679-15772900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
109, 27
               

               
Conread position:
               
11-232
               

               
Cow position:
               
chr11:69402213-69402428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
128, 68
               

               
Conread position:
               
11-235
               

               
Cow position:
               
chr11:1157678-1157461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
126, 21
               

               
Conread position:
               
11-240
               

               
Cow position:
               
chr11:27765188-27764967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
126, 72
               

               
Conread position:
               
11-264
               

               
Cow position:
               
chr11:23586673-23586418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
223, 77
               

               
Conread position:
               
11-277
               

               
Cow position:
               
chr11:2092369-2092110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
218, 47
               

               
Conread position:
               
11-277
               

               
Cow position:
               
chr11:71501097-71501353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
128, 74
               

               
Conread position:
               
11-277
               

               
Cow position:
               
chr11:77546450-77546188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
126, 73
               

               
Conread position:
               
11-290
               

               
Cow position:
               
chr11:30925191-30924909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
85, 129
               

               
Conread position:
               
11-290
               

               
Cow position:
               
chr11:77319449-77319180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
129, 76
               

               
Conread position:
               
11-291
               

               
Cow position:
               
chr11:50072972-50072717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
128, 74
               

               
Conread position:
               
11-308
               

               
Cow position:
               
chr11:36940561-36940862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
126, 67
               

               
Conread position:
               
11-309
               

               
Cow position:
               
chr11:30764525-30764217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
91, 103
               

               
Conread position:
               
11-315
               

               
Cow position:
               
chr11:62573974-62574267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
128, 64
               

               
Conread position:
               
11-317
               

               
Cow position:
               
chr11:13061201-13061494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
128, 74
               

               
Conread position:
               
11-317
               

               
Cow position:
               
chr11:24937700-24937392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
128, 68
               

               
Conread position:
               
11-318
               

               
Cow position:
               
chr11:3780383-3780696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
128, 103
               

               
Conread position:
               
11-318
               

               
Cow position:
               
chr11:15285580-15285889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
49, 37
               

               
Conread position:
               
11-318
               

               
Cow position:
               
chr11:33349666-33349973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
126, 76
               

               
Conread position:
               
11-318
               

               
Cow position:
               
chr11:36986984-36986690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
178, 61
               

               
Conread position:
               
11-318
               

               
Cow position:
               
chr11:65444808-65445102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
126, 67
               

               
Conread position:
               
11-324
               

               
Cow position:
               
chr11:53313537-53313846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
128, 45
               

               
Conread position:
               
11-326
               

               
Cow position:
               
chr11:50152779-50153097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
126, 71
               

               
Conread position:
               
11-328
               

               
Cow position:
               
chr11:61427629-61427333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
11-331
               

               
Cow position:
               
chr11:3833328-3833632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
204, 34
               

               
Conread position:
               
11-332
               

               
Cow position:
               
chr11:4323393-4323081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
128, 68
               

               
Conread position:
               
11-332
               

               
Cow position:
               
chr11:44032046-44031714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
41, 74
               

               
Conread position:
               
11-332
               

               
Cow position:
               
chr11:77758726-77759045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
84, 27
               

               
Conread position:
               
11-334
               

               
Cow position:
               
chr11:30934451-30934138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
128, 34
               

               
Conread position:
               
11-338
               

               
Cow position:
               
chr11:13500050-13499723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
125, 44
               

               
Conread position:
               
11-341
               

               
Cow position:
               
chr11:55333944-55333615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 87
               

               
Conread position:
               
11-342
               

               
Cow position:
               
chr11:14308674-14308343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
128, 68
               

               
Conread position:
               
11-344
               

               
Cow position:
               
chr11:43646377-43646716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
39, 46
               

               
Conread position:
               
11-358
               

               
Cow position:
               
chr11:8828597-8828940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 26
               

               
Conread position:
               
11-365
               

               
Cow position:
               
chr11:48474738-48474390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 73
               

               
Conread position:
               
11-368
               

               
Cow position:
               
chr11:42519769-42519421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
36, 26
               

               
Conread position:
               
11-415
               

               
Cow position:
               
chr11:4732377-4731978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
128, 92
               

               
Conread position:
               
11-415
               

               
Cow position:
               
chr11:10076803-10076414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 73
               

               
Conread position:
               
11-415
               

               
Cow position:
               
chr11:26067148-26067540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
23, 79
               

               
Conread position:
               
11-415
               

               
Cow position:
               
chr11:30165544-30165140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
129, 51
               

               
Conread position:
               
11-415
               

               
Cow position:
               
chr11:76114681-76114292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
238, 76
               

               
Conread position:
               
12-209
               

               
Cow position:
               
chr11:21427959-21428151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
127, 75
               

               
Conread position:
               
13-289
               

               
Cow position:
               
chr11:46413606-46413334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
37, 43
               

               
Conread position:
               
13-296
               

               
Cow position:
               
chr11:33293746-33294041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
74, 110
               

               
Conread position:
               
13-318
               

               
Cow position:
               
chr11:6154441-6154141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
86, 28
               

               
Conread position:
               
14-187
               

               
Cow position:
               
chr11:68913172-68913007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
125, 79
               

               
Conread position:
               
14-231
               

               
Cow position:
               
chr11:40573303-40573513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
125, 21
               

               
Conread position:
               
14-232
               

               
Cow position:
               
chr11:70086366-70086144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
30, 24
               

               
Conread position:
               
14-279
               

               
Cow position:
               
chr11:65762559-65762829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
38, 83
               

               
Conread position:
               
14-308
               

               
Cow position:
               
chr11:83397937-83397643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
125, 74
               

               
Conread position:
               
14-317
               

               
Cow position:
               
chr11:27939516-27939216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 35
               

               
Conread position:
               
14-318
               

               
Cow position:
               
chr11:7924557-7924860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
167, 77
               

               
Conread position:
               
14-318
               

               
Cow position:
               
chr11:10095375-10095071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
125, 72
               

               
Conread position:
               
14-318
               

               
Cow position:
               
chr11:18066793-18067114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
14, 76
               

               
Conread position:
               
14-318
               

               
Cow position:
               
chr11:30355090-30354796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
96, 63
               

               
Conread position:
               
14-318
               

               
Cow position:
               
chr11:70382659-70382966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
27, 51
               

               
Conread position:
               
14-328
               

               
Cow position:
               
chr11:70609830-70609506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
45, 89
               

               
Conread position:
               
14-329
               

               
Cow position:
               
chr11:21549512-21549213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
167, 65
               

               
Conread position:
               
14-332
               

               
Cow position:
               
chr11:8988198-8988515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
125, 73
               

               
Conread position:
               
14-332
               

               
Cow position:
               
chr11:63065684-63065368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
125, 36
               

               
Conread position:
               
14-332
               

               
Cow position:
               
chr11:85723729-85723416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
125, 79
               

               
Conread position:
               
14-333
               

               
Cow position:
               
chr11:3720285-3719965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
125, 15
               

               
Conread position:
               
14-351
               

               
Cow position:
               
chr11:18210316-18210654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
125, 72
               

               
Conread position:
               
14-415
               

               
Cow position:
               
chr11:30879699-30879317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
169, 48
               

               
Conread position:
               
14-415
               

               
Cow position:
               
chr11:33527083-33526707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
334, 79
               

               
Conread position:
               
14-415
               

               
Cow position:
               
chr11:69119325-69118939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
216, 65
               

               
Conread position:
               
15-276
               

               
Cow position:
               
chr11:2509282-2509525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
16-279
               

               
Cow position:
               
chr11:38845232-38845488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
123, 63
               

               
Conread position:
               
16-315
               

               
Cow position:
               
chr11:24585211-24584911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 67
               

               
Conread position:
               
16-331
               

               
Cow position:
               
chr11:37347508-37347191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
123, 70
               

               
Conread position:
               
16-332
               

               
Cow position:
               
chr11:62019554-62019884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
19-291
               

               
Cow position:
               
chr11:26117695-26117961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
21, 17
               

               
Conread position:
               
19-324
               

               
Cow position:
               
chr11:47125576-47125288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
170, 82
               

               
Conread position:
               
19-333
               

               
Cow position:
               
chr11:70838257-70838589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
103, 73
               

               
Conread position:
               
19-422
               

               
Cow position:
               
chr11:81174911-81174523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 24
               

               
Conread position:
               
20-186
               

               
Cow position:
               
chr11:71807545-71807704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
119, 30
               

               
Conread position:
               
20-240
               

               
Cow position:
               
chr11:9463862-9463643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
54, 86
               

               
Conread position:
               
20-264
               

               
Cow position:
               
chr11:82107869-82108105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
28, 43
               

               
Conread position:
               
20-305
               

               
Cow position:
               
chr11:56728975-56728688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
119, 73
               

               
Conread position:
               
20-307
               

               
Cow position:
               
chr11:171676-171957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
119, 73
               

               
Conread position:
               
20-318
               

               
Cow position:
               
chr11:377616-377922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 77
               

               
Conread position:
               
20-318
               

               
Cow position:
               
chr11:86925915-86926189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
163, 10
               

               
Conread position:
               
21-296
               

               
Cow position:
               
chr11:42792948-42793225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
118, 58
               

               
Conread position:
               
21-318
               

               
Cow position:
               
chr11:15632529-15632827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
131, 58
               

               
Conread position:
               
21-318
               

               
Cow position:
               
chr11:20761872-20761574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
118, 58
               

               
Conread position:
               
21-325
               

               
Cow position:
               
chr11:45646568-45646869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
118, 74
               

               
Conread position:
               
21-325
               

               
Cow position:
               
chr11:46746656-46746357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 70
               

               
Conread position:
               
21-327
               

               
Cow position:
               
chr11:83043338-83043641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
118, 58
               

               
Conread position:
               
21-331
               

               
Cow position:
               
chr11:60301936-60302242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
221, 72
               

               
Conread position:
               
21-332
               

               
Cow position:
               
chr11:70459588-70459289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
118, 56
               

               
Conread position:
               
21-334
               

               
Cow position:
               
chr11:1362443-1362769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
21-415
               

               
Cow position:
               
chr11:2309898-2309512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 68
               

               
Conread position:
               
21-415
               

               
Cow position:
               
chr11:23128515-23128912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
76, 58
               

               
Conread position:
               
22-225
               

               
Cow position:
               
chr11:53512109-53511908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
117, 16
               

               
Conread position:
               
22-266
               

               
Cow position:
               
chr11:23271980-23272217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
117, 21
               

               
Conread position:
               
22-272
               

               
Cow position:
               
chr11:7458258-7458508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
117, 57
               

               
Conread position:
               
22-307
               

               
Cow position:
               
chr11:40485911-40486194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
117, 53
               

               
Conread position:
               
22-318
               

               
Cow position:
               
chr11:8827803-8827508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
165, 75
               

               
Conread position:
               
23-326
               

               
Cow position:
               
chr11:67931462-67931774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
116, 94
               

               
Conread position:
               
23-330
               

               
Cow position:
               
chr11:39115518-39115210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
116, 70
               

               
Conread position:
               
23-415
               

               
Cow position:
               
chr11:68206822-68207208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
207, 44
               

               
Conread position:
               
25-316
               

               
Cow position:
               
chr11:38810328-38810620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
114, 30
               

               
Conread position:
               
25-332
               

               
Cow position:
               
chr11:44642264-44642571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 52
               

               
Conread position:
               
25-368
               

               
Cow position:
               
chr11:37160810-37160469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
114, 54
               

               
Conread position:
               
26-307
               

               
Cow position:
               
chr11:24967472-24967201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
113, 9
               

               
Conread position:
               
26-310
               

               
Cow position:
               
chr11:22499344-22499614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
202, 65
               

               
Conread position:
               
26-316
               

               
Cow position:
               
chr11:73924543-73924828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
113, 53
               

               
Conread position:
               
26-318
               

               
Cow position:
               
chr11:12111433-12111739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
24, 30
               

               
Conread position:
               
26-318
               

               
Cow position:
               
chr11:83196517-83196228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
113, 30
               

               
Conread position:
               
26-329
               

               
Cow position:
               
chr11:36658800-36659097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
113, 9
               

               
Conread position:
               
26-332
               

               
Cow position:
               
chr11:21894138-21894439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
113, 51
               

               
Conread position:
               
26-332
               

               
Cow position:
               
chr11:80923301-80923621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
13, 28
               

               
Conread position:
               
26-403
               

               
Cow position:
               
chr11:16251224-16251602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
113, 66
               

               
Conread position:
               
27-331
               

               
Cow position:
               
chr11:62150872-62151166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
191, 52
               

               
Conread position:
               
29-316
               

               
Cow position:
               
chr11:77238147-77237852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
59, 269
               

               
Conread position:
               
29-330
               

               
Cow position:
               
chr11:58990519-58990227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 58
               

               
Conread position:
               
30-191
               

               
Cow position:
               
chr11:42066875-42066721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
156, 32
               

               
Conread position:
               
30-201
               

               
Cow position:
               
chr11:51626980-51626813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
109, 57
               

               
Conread position:
               
30-210
               

               
Cow position:
               
chr11:32693463-32693630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
156, 37
               

               
Conread position:
               
30-210
               

               
Cow position:
               
chr11:63499308-63499482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
108, 49
               

               
Conread position:
               
30-221
               

               
Cow position:
               
chr11:41134050-41134235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
109, 58
               

               
Conread position:
               
30-257
               

               
Cow position:
               
chr11:33468726-33468508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
111, 63
               

               
Conread position:
               
30-277
               

               
Cow position:
               
chr11:25620381-25620626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
37, 46
               

               
Conread position:
               
30-293
               

               
Cow position:
               
chr11:2907507-2907772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
94, 49
               

               
Conread position:
               
30-307
               

               
Cow position:
               
chr11:78381045-78381307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
109, 58
               

               
Conread position:
               
30-317
               

               
Cow position:
               
chr11:53773697-53773402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
109, 58
               

               
Conread position:
               
30-318
               

               
Cow position:
               
chr11:5226716-5227010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
109, 42
               

               
Conread position:
               
30-318
               

               
Cow position:
               
chr11:48697464-48697176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 75
               

               
Conread position:
               
30-318
               

               
Cow position:
               
chr11:48932571-48932854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 63
               

               
Conread position:
               
30-318
               

               
Cow position:
               
chr11:59872946-59872655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
109, 58
               

               
Conread position:
               
30-333
               

               
Cow position:
               
chr11:59902906-59902604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
109, 57
               

               
Conread position:
               
30-336
               

               
Cow position:
               
chr11:80530382-80530081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 58
               

               
Conread position:
               
30-337
               

               
Cow position:
               
chr11:38194173-38193861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 61
               

               
Conread position:
               
30-341
               

               
Cow position:
               
chr11:7590208-7589896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
20, 26
               

               
Conread position:
               
30-342
               

               
Cow position:
               
chr11:62880610-62880920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
150, 58
               

               
Conread position:
               
30-415
               

               
Cow position:
               
chr11:17860140-17860514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 58
               

               
Conread position:
               
30-415
               

               
Cow position:
               
chr11:62979506-62979117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 63
               

               
Conread position:
               
30-415
               

               
Cow position:
               
chr11:64029247-64029616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
160, 58
               

               
Conread position:
               
31-317
               

               
Cow position:
               
chr11:17968568-17968846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
63, 7
               

               
Conread position:
               
31-318
               

               
Cow position:
               
chr11:18243926-18244213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
108, 57
               

               
Conread position:
               
31-318
               

               
Cow position:
               
chr11:49149052-49148778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
108, 12
               

               
Conread position:
               
31-415
               

               
Cow position:
               
chr11:81066566-81066942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
31, 7
               

               
Conread position:
               
32-198
               

               
Cow position:
               
chr11:49057417-49057256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
107, 60
               

               
Conread position:
               
32-317
               

               
Cow position:
               
chr11:32750128-32749837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
107, 54
               

               
Conread position:
               
32-415
               

               
Cow position:
               
chr11:7395151-7394796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
154, 53
               

               
Conread position:
               
33-317
               

               
Cow position:
               
chr11:34829766-34830050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
106, 58
               

               
Conread position:
               
33-410
               

               
Cow position:
               
chr11:75480007-75480390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
81, 59
               

               
Conread position:
               
35-332
               

               
Cow position:
               
chr11:13191236-13190934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
98, 55
               

               
Conread position:
               
35-340
               

               
Cow position:
               
chr11:7333709-7334015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
105, 40
               

               
Conread position:
               
35-415
               

               
Cow position:
               
chr11:18086329-18086698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
146, 67
               

               
Conread position:
               
37-311
               

               
Cow position:
               
chr11:59155870-59156135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
71, 19
               

               
Conread position:
               
37-332
               

               
Cow position:
               
chr11:18484160-18484445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
38-201
               

               
Cow position:
               
chr11:65435862-65435704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
101, 40
               

               
Conread position:
               
38-235
               

               
Cow position:
               
chr11:36672036-36672231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
101, 55
               

               
Conread position:
               
38-260
               

               
Cow position:
               
chr11:32610006-32609794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
101, 50
               

               
Conread position:
               
38-318
               

               
Cow position:
               
chr11:32072160-32071878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
101, 36
               

               
Conread position:
               
38-318
               

               
Cow position:
               
chr11:53130821-53130541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 49
               

               
Conread position:
               
39-336
               

               
Cow position:
               
chr11:68909839-68910138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 58
               

               
Conread position:
               
40-204
               

               
Cow position:
               
chr11:37546511-37546666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
40-318
               

               
Cow position:
               
chr11:17112624-17112898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 55
               

               
Conread position:
               
40-374
               

               
Cow position:
               
chr11:8247207-8246860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
37, 8
               

               
Conread position:
               
41-317
               

               
Cow position:
               
chr11:58102769-58103045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
7, 53
               

               
Conread position:
               
41-414
               

               
Cow position:
               
chr11:30110967-30110594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
98, 47
               

               
Conread position:
               
43-230
               

               
Cow position:
               
chr11:15525970-15525775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
46, 99
               

               
Conread position:
               
43-254
               

               
Cow position:
               
chr11:18399325-18399533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
96, 42
               

               
Conread position:
               
43-279
               

               
Cow position:
               
chr11:2514591-2514825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
96, 60
               

               
Conread position:
               
43-300
               

               
Cow position:
               
chr11:5677726-5677465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
96, 36
               

               
Conread position:
               
43-304
               

               
Cow position:
               
chr11:2050582-2050322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
142, 34
               

               
Conread position:
               
43-354
               

               
Cow position:
               
chr11:46580360-46580059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
96, 36
               

               
Conread position:
               
44-333
               

               
Cow position:
               
chr11:85764937-85764664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
95, 51
               

               
Conread position:
               
46-311
               

               
Cow position:
               
chr11:11460495-11460233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
73, 5
               

               
Conread position:
               
47-233
               

               
Cow position:
               
chr11:47109972-47109788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
69, 81
               

               
Conread position:
               
47-291
               

               
Cow position:
               
chr11:62808653-62808893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
92, 39
               

               
Conread position:
               
47-306
               

               
Cow position:
               
chr11:63516826-63516563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 48
               

               
Conread position:
               
47-309
               

               
Cow position:
               
chr11:62045395-62045136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
92, 40
               

               
Conread position:
               
47-317
               

               
Cow position:
               
chr11:48901084-48901348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
92, 14
               

               
Conread position:
               
47-318
               

               
Cow position:
               
chr11:8105784-8105511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 56
               

               
Conread position:
               
47-318
               

               
Cow position:
               
chr11:41983458-41983718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
92, 28
               

               
Conread position:
               
47-318
               

               
Cow position:
               
chr11:47165142-47165408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
92, 50
               

               
Conread position:
               
47-318
               

               
Cow position:
               
chr11:62016282-62016541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
91, 37
               

               
Conread position:
               
47-328
               

               
Cow position:
               
chr11:77241369-77241099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
92, 46
               

               
Conread position:
               
47-332
               

               
Cow position:
               
chr11:31901045-31900763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
92, 40
               

               
Conread position:
               
47-332
               

               
Cow position:
               
chr11:62965549-62965839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
76, 41
               

               
Conread position:
               
47-415
               

               
Cow position:
               
chr11:47586351-47586707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
92, 38
               

               
Conread position:
               
49-264
               

               
Cow position:
               
chr11:21830351-21830570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
90, 43
               

               
Conread position:
               
50-264
               

               
Cow position:
               
chr11:17574337-17574538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
52-327
               

               
Cow position:
               
chr11:81614646-81614912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
87, 32
               

               
Conread position:
               
52-330
               

               
Cow position:
               
chr11:58460105-58459847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
87, 36
               

               
Conread position:
               
52-332
               

               
Cow position:
               
chr11:1485365-1485646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
15, 35
               

               
Conread position:
               
52-332
               

               
Cow position:
               
chr11:83066491-83066210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
87, 40
               

               
Conread position:
               
55-203
               

               
Cow position:
               
chr11:83926040-83925895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
84, 38
               

               
Conread position:
               
55-245
               

               
Cow position:
               
chr11:79666787-79666983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
55-317
               

               
Cow position:
               
chr11:60822739-60822997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
84, 24
               

               
Conread position:
               
55-318
               

               
Cow position:
               
chr11:12555413-12555689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
43, 63
               

               
Conread position:
               
55-318
               

               
Cow position:
               
chr11:15124986-15125251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
114, 30
               

               
Conread position:
               
55-328
               

               
Cow position:
               
chr11:43360786-43361082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
84, 42
               

               
Conread position:
               
55-332
               

               
Cow position:
               
chr11:65857851-65857572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
86, 36
               

               
Conread position:
               
56-415
               

               
Cow position:
               
chr11:81605619-81605277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
83, 37
               

               
Conread position:
               
57-232
               

               
Cow position:
               
chr11:70600826-70601001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
80, 31
               

               
Conread position:
               
57-318
               

               
Cow position:
               
chr11:71455781-71455516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
82, 17
               

               
Conread position:
               
58-332
               

               
Cow position:
               
chr11:25320044-25319765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
38, 21
               

               
Conread position:
               
61-415
               

               
Cow position:
               
chr11:64932308-64932658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
80, 141
               

               
Conread position:
               
62-258
               

               
Cow position:
               
chr11:61298996-61299189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
77, 31
               

               
Conread position:
               
62-315
               

               
Cow position:
               
chr11:9837114-9837366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 25
               

               
Conread position:
               
62-325
               

               
Cow position:
               
chr11:75748418-75748157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
81, 24
               

               
Conread position:
               
62-338
               

               
Cow position:
               
chr11:10877230-10876944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
24, 35
               

               
Conread position:
               
62-340
               

               
Cow position:
               
chr11:38794534-38794262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
77, 31
               

               
Conread position:
               
62-414
               

               
Cow position:
               
chr11:49106041-49105695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
77, 25
               

               
Conread position:
               
63-332
               

               
Cow position:
               
chr11:71846363-71846634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
76, 25
               

               
Conread position:
               
63-415
               

               
Cow position:
               
chr11:21819458-21819812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 34
               

               
Conread position:
               
64-317
               

               
Cow position:
               
chr11:8232585-8232834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
77, 15
               

               
Conread position:
               
64-317
               

               
Cow position:
               
chr11:43914197-43913952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
75, 24
               

               
Conread position:
               
64-416
               

               
Cow position:
               
chr11:10876011-10875661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
75, 23
               

               
Conread position:
               
70-316
               

               
Cow position:
               
chr11:36496825-36496584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
69, 27
               

               
Conread position:
               
71-334
               

               
Cow position:
               
chr11:35149144-35148881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
68, 30
               

               
Conread position:
               
73-296
               

               
Cow position:
               
chr11:63156931-63157162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
66, 19
               

               
Conread position:
               
79-425
               

               
Cow position:
               
chr11:73478593-73478253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
60, 221
               

               
Conread position:
               
80-318
               

               
Cow position:
               
chr11:61846027-61846277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
22, 61
               

               
Conread position:
               
80-324
               

               
Cow position:
               
chr11:74929757-74929503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
27, 229
               

               
Conread position:
               
80-346
               

               
Cow position:
               
chr11:67940670-67940407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
17, 58
               

               
Conread position:
               
80-412
               

               
Cow position:
               
chr11:14941624-14941957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
59, 21
               

               
Conread position:
               
81-318
               

               
Cow position:
               
chr11:47193491-47193252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
14, 34
               

               
Conread position:
               
82-318
               

               
Cow position:
               
chr11:2281323-2281558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
99, 39
               

               
Conread position:
               
82-331
               

               
Cow position:
               
chr11:34121734-34121472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
19, 14
               

               
Conread position:
               
82-333
               

               
Cow position:
               
chr11:56796771-56797025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
5, 26
               

               
Conread position:
               
83-318
               

               
Cow position:
               
chr11:64334819-64334586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
141, 23
               

               
Conread position:
               
83-332
               

               
Cow position:
               
chr11:36182657-36182403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
56, 14
               

               
Conread position:
               
84-296
               

               
Cow position:
               
chr11:20238642-20238423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
84-296
               

               
Cow position:
               
chr11:40818669-40818888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
84-317
               

               
Cow position:
               
chr11:986901-986669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
5, 31
               

               
Conread position:
               
84-327
               

               
Cow position:
               
chr11:71309559-71309809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
92, 53
               

               
Conread position:
               
84-332
               

               
Cow position:
               
chr11:62490402-62490148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
27, 13
               

               
Conread position:
               
84-332
               

               
Cow position:
               
chr11:62749790-62750035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
146, 13
               

               
Conread position:
               
84-332
               

               
Cow position:
               
chr11:74316681-74316421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
16, 31
               

               
Conread position:
               
84-373
               

               
Cow position:
               
chr11:1668647-1668348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
13, 93
               

               
Conread position:
               
85-264
               

               
Cow position:
               
chr11:17661059-17660877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
148, 14
               

               
Conread position:
               
86-255
               

               
Cow position:
               
chr11:47850990-47850823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
53, 23
               

               
Conread position:
               
87-279
               

               
Cow position:
               
chr11:11469674-11469866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
160, 6
               

               
Conread position:
               
87-304
               

               
Cow position:
               
chr11:17321628-17321400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
19, 43
               

               
Conread position:
               
87-348
               

               
Cow position:
               
chr11:25165407-25165144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
52, 27
               

               
Conread position:
               
88-222
               

               
Cow position:
               
chr11:29266506-29266370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
88-318
               

               
Cow position:
               
chr11:18509051-18509280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
15, 156
               

               
Conread position:
               
88-334
               

               
Cow position:
               
chr11:19890826-19890597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
51, 36
               

               
Conread position:
               
88-368
               

               
Cow position:
               
chr11:50778338-50778048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
89-342
               

               
Cow position:
               
chr11:53142256-53142509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
135, 51
               

               
Conread position:
               
91-292
               

               
Cow position:
               
chr11:41438258-41438470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
91-318
               

               
Cow position:
               
chr11:10302227-10302460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
8, 168
               

               
Conread position:
               
92-231
               

               
Cow position:
               
chr11:48383489-48383350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
47, 22
               

               
Conread position:
               
92-245
               

               
Cow position:
               
chr11:33364305-33364152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
11, 23
               

               
Conread position:
               
92-293
               

               
Cow position:
               
chr11:36848887-36848686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
22, 8
               

               
Conread position:
               
92-311
               

               
Cow position:
               
chr11:57061838-57061612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
47, 9
               

               
Conread position:
               
92-317
               

               
Cow position:
               
chr11:35684535-35684769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
47, 22
               

               
Conread position:
               
92-318
               

               
Cow position:
               
chr11:27462431-27462656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
96, 48
               

               
Conread position:
               
93-318
               

               
Cow position:
               
chr11:53719901-53719674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
47, 10
               

               
Conread position:
               
93-415
               

               
Cow position:
               
chr11:45277187-45277515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
46, 23
               

               
Conread position:
               
94-235
               

               
Cow position:
               
chr11:36301117-36301261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
94-245
               

               
Cow position:
               
chr11:36766619-36766472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
20, 46
               

               
Conread position:
               
94-332
               

               
Cow position:
               
chr11:952226-951983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
45, 68
               

               
Conread position:
               
96-318
               

               
Cow position:
               
chr11:41577058-41577276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 11
               

               
Conread position:
               
96-318
               

               
Cow position:
               
chr11:68570707-68570943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
96-331
               

               
Cow position:
               
chr11:50197472-50197729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
97-335
               

               
Cow position:
               
chr11:19788089-19787857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
97-364
               

               
Cow position:
               
chr11:80011883-80012149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
17, 44
               

               
Conread position:
               
97-394
               

               
Cow position:
               
chr11:35276257-35275956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
17, 60
               

               
Conread position:
               
98-251
               

               
Cow position:
               
chr11:29786650-29786800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
41, 105
               

               
Conread position:
               
100-318
               

               
Cow position:
               
chr11:50112140-50111920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
26, 13
               

               
Conread position:
               
100-318
               

               
Cow position:
               
chr11:60470223-60470451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
5, 72
               

               
Conread position:
               
101-318
               

               
Cow position:
               
chr11:67951012-67951232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
10, 62
               

               
Conread position:
               
101-318
               

               
Cow position:
               
chr11:75355560-75355338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
120, 40
               

               
Conread position:
               
101-325
               

               
Cow position:
               
chr11:77207998-77207770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
38, 64
               

               
Conread position:
               
101-375
               

               
Cow position:
               
chr11:57111356-57111640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
38, 10
               

               
Conread position:
               
101-396
               

               
Cow position:
               
chr11:58614614-58614312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
38, 204
               

               
Conread position:
               
101-415
               

               
Cow position:
               
chr11:1485916-1486230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
38, 12
               

               
Conread position:
               
103-318
               

               
Cow position:
               
chr11:70745579-70745807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
36, 52
               

               
Conread position:
               
103-330
               

               
Cow position:
               
chr11:34467536-34467315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
36, 53
               

               
Conread position:
               
104-316
               

               
Cow position:
               
chr11:65495377-65495597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
35, 140
               

               
Conread position:
               
104-333
               

               
Cow position:
               
chr11:58400211-58399983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
35, 71
               

               
Conread position:
               
105-268
               

               
Cow position:
               
chr11:37100408-37100581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
36, 11
               

               
Conread position:
               
105-318
               

               
Cow position:
               
chr11:7247935-7248148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
76, 12
               

               
Conread position:
               
105-318
               

               
Cow position:
               
chr11:44819051-44818825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
106-290
               

               
Cow position:
               
chr11:47899226-47899033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
106-315
               

               
Cow position:
               
chr11:84924148-84924364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
33, 19
               

               
Conread position:
               
106-318
               

               
Cow position:
               
chr11:41598778-41598999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
106-348
               

               
Cow position:
               
chr11:60512733-60512484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
33, 21
               

               
Conread position:
               
106-415
               

               
Cow position:
               
chr11:78820044-78819747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
33, 57
               

               
Conread position:
               
107-318
               

               
Cow position:
               
chr11:10992227-10992008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
107-346
               

               
Cow position:
               
chr11:38009869-38010111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
32, 16
               

               
Conread position:
               
110-308
               

               
Cow position:
               
chr11:80825106-80824907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
29, 126
               

               
Conread position:
               
110-335
               

               
Cow position:
               
chr11:35363441-35363207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
29, 198
               

               
Conread position:
               
111-300
               

               
Cow position:
               
chr11:27722304-27722108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
28, 16
               

               
Conread position:
               
112-318
               

               
Cow position:
               
chr11:84890809-84891023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
29, 195
               

               
Conread position:
               
113-350
               

               
Cow position:
               
chr11:70163844-70163596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
26, 77
               

               
Conread position:
               
114-318
               

               
Cow position:
               
chr11:55348206-55347991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
114-332
               

               
Cow position:
               
chr11:54856566-54856349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
25, 36
               

               
Conread position:
               
116-245
               

               
Cow position:
               
chr11:27911028-27910898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
23, 33
               

               
Conread position:
               
117-311
               

               
Cow position:
               
chr11:25337012-25336811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
22, 74
               

               
Conread position:
               
117-332
               

               
Cow position:
               
chr11:34413034-34412811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
117-332
               

               
Cow position:
               
chr11:35238770-35238543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
118-332
               

               
Cow position:
               
chr11:7315192-7315412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
63, 22
               

               
Conread position:
               
124-415
               

               
Cow position:
               
chr11:31885447-31885152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
15, 93
               

               
Conread position:
               
127-318
               

               
Cow position:
               
chr11:48232659-48232471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
12, 88
               

               
Conread position:
               
127-334
               

               
Cow position:
               
chr11:79019597-79019803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
12, 116
               

               
Conread position:
               
127-342
               

               
Cow position:
               
chr11:73473844-73474069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
12, 164
               

               
Conread position:
               
127-352
               

               
Cow position:
               
chr11:5221499-5221722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
10, 43
               

               
Conread position:
               
128-318
               

               
Cow position:
               
chr11:37118414-37118213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
11, 153
               

               
Conread position:
               
128-326
               

               
Cow position:
               
chr11:64090159-64090366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
128-330
               

               
Cow position:
               
chr11:24601898-24601683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
129-415
               

               
Cow position:
               
chr11:3303755-3303476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
61, 11
               

               
Conread position:
               
130-318
               

               
Cow position:
               
chr11:84775028-84774846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
51, 34
               

               
Conread position:
               
130-329
               

               
Cow position:
               
chr11:82232338-82232139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
11, 169
               

               
Conread position:
               
130-334
               

               
Cow position:
               
chr11:85189459-85189672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
9, 31
               

               
Conread position:
               
131-332
               

               
Cow position:
               
chr11:46451534-46451333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
50, 141
               

               
Conread position:
               
135-415
               

               
Cow position:
               
chr11:40250685-40250961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
28, 5
               

               
Conread position:
               
136-310
               

               
Cow position:
               
chr11:51756234-51756053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
45, 167
               

               
Conread position:
               
138-278
               

               
Cow position:
               
chr11:21728355-21728499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
138-296
               

               
Cow position:
               
chr11:35874078-35874234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
149-329
               

               
Cow position:
               
chr11:2344176-2343997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
41, 75
               

               
Conread position:
               
150-318
               

               
Cow position:
               
chr11:6639412-6639240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
30, 153
               

               
Conread position:
               
150-318
               

               
Cow position:
               
chr11:62376534-62376708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
64, 155
               

               
Conread position:
               
151-326
               

               
Cow position:
               
chr11:55117383-55117193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
151-333
               

               
Cow position:
               
chr11:54134349-54134532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
85, 25
               

               
Conread position:
               
151-415
               

               
Cow position:
               
chr11:37563364-37563101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
102, 30
               

               
Conread position:
               
152-344
               

               
Cow position:
               
chr11:39057534-39057342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
79, 36
               

               
Conread position:
               
152-357
               

               
Cow position:
               
chr11:3282951-3282748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
78, 121
               

               
Conread position:
               
156-358
               

               
Cow position:
               
chr11:40608823-40609032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
157-415
               

               
Cow position:
               
chr11:48428978-48428722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
187, 60
               

               
Conread position:
               
159-342
               

               
Cow position:
               
chr11:9234523-9234333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
27, 159
               

               
Conread position:
               
159-347
               

               
Cow position:
               
chr11:63920396-63920588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
74, 20
               

               
Conread position:
               
164-334
               

               
Cow position:
               
chr11:30172262-30172091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
66, 133
               

               
Conread position:
               
169-351
               

               
Cow position:
               
chr11:6091776-6091953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
175-312
               

               
Cow position:
               
chr11:31227866-31227729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
183-318
               

               
Cow position:
               
chr11:39034318-39034183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
183-351
               

               
Cow position:
               
chr11:48982978-48982809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
114, 0
               
Show alignments to all cow chromosomes.