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Cow genome map

           
Conread name:
           
Utr1-UTR010050E01
        

               
Conread position:
               
1-392
               

               
Cow position:
               
chr11:36764862-36765252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
48, 27
               

               
Conread position:
               
1-396
               

               
Cow position:
               
chr11:37070159-37069747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
44, 183
               

               
Conread position:
               
1-477
               

               
Cow position:
               
chr11:15720539-15720043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 255
               

               
Conread position:
               
1-483
               

               
Cow position:
               
chr11:74194041-74193566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 128
               

               
Conread position:
               
1-494
               

               
Cow position:
               
chr11:30254418-30254924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 312
               

               
Conread position:
               
1-594
               

               
Cow position:
               
chr11:23124739-23124153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 118
               

               
Conread position:
               
1-602
               

               
Cow position:
               
chr11:42310258-42309656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
624
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 29
               

               
Conread position:
               
1-644
               

               
Cow position:
               
chr11:35332615-35331966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
672
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
50, 116
               

               
Conread position:
               
1-678
               

               
Cow position:
               
chr11:28693782-28693080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
710
               

               
Alignm identity:
               
474
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 205
               

               
Conread position:
               
1-678
               

               
Cow position:
               
chr11:38833284-38832587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
708
               

               
Alignm identity:
               
476
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 291
               

               
Conread position:
               
1-678
               

               
Cow position:
               
chr11:39483490-39484172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
699
               

               
Alignm identity:
               
463
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 22
               

               
Conread position:
               
1-678
               

               
Cow position:
               
chr11:66731345-66732020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
694
               

               
Alignm identity:
               
455
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 50
               

               
Conread position:
               
1-688
               

               
Cow position:
               
chr11:47973663-47972954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
718
               

               
Alignm identity:
               
499
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 325
               

               
Conread position:
               
1-689
               

               
Cow position:
               
chr11:9080356-9079664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
719
               

               
Alignm identity:
               
472
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 192
               

               
Conread position:
               
1-689
               

               
Cow position:
               
chr11:21897497-21896796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
720
               

               
Alignm identity:
               
484
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 16
               

               
Conread position:
               
1-689
               

               
Cow position:
               
chr11:32078591-32077883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
718
               

               
Alignm identity:
               
492
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 325
               

               
Conread position:
               
1-689
               

               
Cow position:
               
chr11:40403573-40402855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
726
               

               
Alignm identity:
               
490
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 313
               

               
Conread position:
               
1-689
               

               
Cow position:
               
chr11:53429833-53429123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
717
               

               
Alignm identity:
               
492
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 325
               

               
Conread position:
               
1-689
               

               
Cow position:
               
chr11:67296819-67296108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
719
               

               
Alignm identity:
               
482
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 324
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chr11:27834558-27833855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
717
               

               
Alignm identity:
               
485
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 10
               

               
Conread position:
               
1-690
               

               
Cow position:
               
chr11:33000080-33000780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
719
               

               
Alignm identity:
               
490
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 202
               

               
Conread position:
               
1-693
               

               
Cow position:
               
chr11:35862439-35861748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
717
               

               
Alignm identity:
               
485
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 325
               

               
Conread position:
               
1-695
               

               
Cow position:
               
chr11:76371866-76371161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
721
               

               
Alignm identity:
               
486
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 59
               

               
Conread position:
               
1-707
               

               
Cow position:
               
chr11:26654806-26655545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
752
               

               
Alignm identity:
               
498
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 124
               

               
Conread position:
               
1-711
               

               
Cow position:
               
chr11:48740720-48740015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
740
               

               
Alignm identity:
               
503
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 63
               

               
Conread position:
               
2-689
               

               
Cow position:
               
chr11:2533788-2534498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
719
               

               
Alignm identity:
               
500
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 324
               

               
Conread position:
               
2-692
               

               
Cow position:
               
chr11:52563846-52564549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
714
               

               
Alignm identity:
               
455
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 27
               

               
Conread position:
               
3-401
               

               
Cow position:
               
chr11:31864808-31865212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 118
               

               
Conread position:
               
3-477
               

               
Cow position:
               
chr11:30105002-30104513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 323
               

               
Conread position:
               
3-477
               

               
Cow position:
               
chr11:39585531-39585043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 309
               

               
Conread position:
               
3-478
               

               
Cow position:
               
chr11:73467224-73466741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 115
               

               
Conread position:
               
3-565
               

               
Cow position:
               
chr11:47737351-47736767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 58
               

               
Conread position:
               
3-620
               

               
Cow position:
               
chr11:15987447-15988081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
641
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 58
               

               
Conread position:
               
3-649
               

               
Cow position:
               
chr11:56479738-56479074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
669
               

               
Alignm identity:
               
462
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 309
               

               
Conread position:
               
3-663
               

               
Cow position:
               
chr11:84966308-84966989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
688
               

               
Alignm identity:
               
478
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 58
               

               
Conread position:
               
3-678
               

               
Cow position:
               
chr11:17548350-17549048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
706
               

               
Alignm identity:
               
486
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 214
               

               
Conread position:
               
3-678
               

               
Cow position:
               
chr11:57625982-57625299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
696
               

               
Alignm identity:
               
484
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 13
               

               
Conread position:
               
3-689
               

               
Cow position:
               
chr11:10699556-10698847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
717
               

               
Alignm identity:
               
495
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 323
               

               
Conread position:
               
3-689
               

               
Cow position:
               
chr11:17105491-17104791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
713
               

               
Alignm identity:
               
487
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 133
               

               
Conread position:
               
3-689
               

               
Cow position:
               
chr11:32454252-32454953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
711
               

               
Alignm identity:
               
497
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 150
               

               
Conread position:
               
3-689
               

               
Cow position:
               
chr11:58135909-58136616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
718
               

               
Alignm identity:
               
500
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 140
               

               
Conread position:
               
3-689
               

               
Cow position:
               
chr11:63391285-63390580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
713
               

               
Alignm identity:
               
495
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 322
               

               
Conread position:
               
3-689
               

               
Cow position:
               
chr11:67452845-67453554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
719
               

               
Alignm identity:
               
499
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 323
               

               
Conread position:
               
3-693
               

               
Cow position:
               
chr11:7121773-7121059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
501
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 323
               

               
Conread position:
               
3-693
               

               
Cow position:
               
chr11:8444795-8444083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
720
               

               
Alignm identity:
               
500
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 321
               

               
Conread position:
               
3-693
               

               
Cow position:
               
chr11:19061884-19061170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
504
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 323
               

               
Conread position:
               
3-693
               

               
Cow position:
               
chr11:30201499-30200789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
723
               

               
Alignm identity:
               
508
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 294
               

               
Conread position:
               
3-693
               

               
Cow position:
               
chr11:38796025-38796710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
714
               

               
Alignm identity:
               
490
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 68
               

               
Conread position:
               
3-693
               

               
Cow position:
               
chr11:61398419-61397717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
718
               

               
Alignm identity:
               
495
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 58
               

               
Conread position:
               
3-693
               

               
Cow position:
               
chr11:73799509-73798794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
723
               

               
Alignm identity:
               
499
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 323
               

               
Conread position:
               
6-450
               

               
Cow position:
               
chr11:55484444-55484900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 57
               

               
Conread position:
               
9-402
               

               
Cow position:
               
chr11:38600739-38600342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 315
               

               
Conread position:
               
9-478
               

               
Cow position:
               
chr11:23624018-23623536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 301
               

               
Conread position:
               
9-689
               

               
Cow position:
               
chr11:28124711-28125414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
713
               

               
Alignm identity:
               
492
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 317
               

               
Conread position:
               
9-689
               

               
Cow position:
               
chr11:28227581-28226879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
711
               

               
Alignm identity:
               
490
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 315
               

               
Conread position:
               
9-693
               

               
Cow position:
               
chr11:32478616-32477908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
715
               

               
Alignm identity:
               
492
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 317
               

               
Conread position:
               
9-715
               

               
Cow position:
               
chr11:21476817-21477533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
735
               

               
Alignm identity:
               
490
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 198
               

               
Conread position:
               
17-428
               

               
Cow position:
               
chr11:35255259-35254848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 34
               

               
Conread position:
               
17-492
               

               
Cow position:
               
chr11:16120226-16119747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 54
               

               
Conread position:
               
17-644
               

               
Cow position:
               
chr11:76277053-76276414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
650
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 51
               

               
Conread position:
               
17-649
               

               
Cow position:
               
chr11:66568262-66568908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
664
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 84
               

               
Conread position:
               
17-689
               

               
Cow position:
               
chr11:39489664-39490296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
676
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
56, 37
               

               
Conread position:
               
18-501
               

               
Cow position:
               
chr11:27937614-27938103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 152
               

               
Conread position:
               
18-547
               

               
Cow position:
               
chr11:74346610-74347158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 309
               

               
Conread position:
               
18-678
               

               
Cow position:
               
chr11:49172295-49171608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
692
               

               
Alignm identity:
               
475
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 176
               

               
Conread position:
               
18-689
               

               
Cow position:
               
chr11:18147323-18146647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
705
               

               
Alignm identity:
               
457
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 36
               

               
Conread position:
               
20-595
               

               
Cow position:
               
chr11:66946107-66945528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 117
               

               
Conread position:
               
26-681
               

               
Cow position:
               
chr11:45652693-45652020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
680
               

               
Alignm identity:
               
457
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 265
               

               
Conread position:
               
27-672
               

               
Cow position:
               
chr11:69167475-69168134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
674
               

               
Alignm identity:
               
478
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 106
               

               
Conread position:
               
29-501
               

               
Cow position:
               
chr11:15674854-15674394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
17, 25
               

               
Conread position:
               
33-669
               

               
Cow position:
               
chr11:53308679-53308016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
675
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 300
               

               
Conread position:
               
40-693
               

               
Cow position:
               
chr11:9249004-9248345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
678
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 20
               

               
Conread position:
               
42-449
               

               
Cow position:
               
chr11:4192876-4193289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 33
               

               
Conread position:
               
42-675
               

               
Cow position:
               
chr11:26562064-26561433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
652
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
351, 15
               

               
Conread position:
               
44-559
               

               
Cow position:
               
chr11:1506975-1506472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
185, 71
               

               
Conread position:
               
45-478
               

               
Cow position:
               
chr11:46767204-46767637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 55
               

               
Conread position:
               
45-678
               

               
Cow position:
               
chr11:28393129-28393767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
653
               

               
Alignm identity:
               
444
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 101
               

               
Conread position:
               
45-678
               

               
Cow position:
               
chr11:42209791-42210427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
659
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 9
               

               
Conread position:
               
45-689
               

               
Cow position:
               
chr11:29663813-29663151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
670
               

               
Alignm identity:
               
463
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 280
               

               
Conread position:
               
45-689
               

               
Cow position:
               
chr11:75403258-75402608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
663
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 15
               

               
Conread position:
               
45-693
               

               
Cow position:
               
chr11:26052281-26051618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
674
               

               
Alignm identity:
               
471
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 214
               

               
Conread position:
               
45-693
               

               
Cow position:
               
chr11:58050685-58050021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
674
               

               
Alignm identity:
               
454
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 73
               

               
Conread position:
               
45-707
               

               
Cow position:
               
chr11:45549391-45550044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
684
               

               
Alignm identity:
               
496
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 66
               

               
Conread position:
               
48-678
               

               
Cow position:
               
chr11:11591221-11591867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
655
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 260
               

               
Conread position:
               
50-728
               

               
Cow position:
               
chr11:72590201-72590877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
699
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
40, 17
               

               
Conread position:
               
54-607
               

               
Cow position:
               
chr11:17834319-17833759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
333, 6
               

               
Conread position:
               
54-677
               

               
Cow position:
               
chr11:19429098-19428445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
664
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
6, 50
               

               
Conread position:
               
59-480
               

               
Cow position:
               
chr11:70811405-70811826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
75, 8
               

               
Conread position:
               
60-594
               

               
Cow position:
               
chr11:2540683-2541242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
23, 159
               

               
Conread position:
               
60-678
               

               
Cow position:
               
chr11:60824059-60824664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
636
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
67, 103
               

               
Conread position:
               
61-492
               

               
Cow position:
               
chr11:22304436-22303987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 143
               

               
Conread position:
               
62-605
               

               
Cow position:
               
chr11:32270901-32270346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
103, 5
               

               
Conread position:
               
64-690
               

               
Cow position:
               
chr11:44232700-44233334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
650
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 36
               

               
Conread position:
               
67-639
               

               
Cow position:
               
chr11:58819650-58820235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 33
               

               
Conread position:
               
67-675
               

               
Cow position:
               
chr11:43992524-43991895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
645
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
65, 12
               

               
Conread position:
               
68-473
               

               
Cow position:
               
chr11:37293827-37293416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
58, 69
               

               
Conread position:
               
68-684
               

               
Cow position:
               
chr11:77747777-77747173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
638
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
99, 46
               

               
Conread position:
               
68-689
               

               
Cow position:
               
chr11:3075915-3076534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
644
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 74
               

               
Conread position:
               
72-678
               

               
Cow position:
               
chr11:12317808-12317180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
633
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 251
               

               
Conread position:
               
73-403
               

               
Cow position:
               
chr11:67243706-67243392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
229, 55
               

               
Conread position:
               
73-647
               

               
Cow position:
               
chr11:4059809-4059242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 93
               

               
Conread position:
               
74-716
               

               
Cow position:
               
chr11:85657726-85658345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
659
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
66, 29
               

               
Conread position:
               
79-494
               

               
Cow position:
               
chr11:15652415-15652827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
315, 66
               

               
Conread position:
               
81-689
               

               
Cow position:
               
chr11:74928073-74928702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
639
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 163
               

               
Conread position:
               
83-675
               

               
Cow position:
               
chr11:27056411-27055828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
614
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
49, 86
               

               
Conread position:
               
83-678
               

               
Cow position:
               
chr11:20494814-20494216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
610
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 17
               

               
Conread position:
               
86-463
               

               
Cow position:
               
chr11:56947226-56946856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
15, 43
               

               
Conread position:
               
89-689
               

               
Cow position:
               
chr11:25564037-25564652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
628
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 68
               

               
Conread position:
               
92-524
               

               
Cow position:
               
chr11:3790074-3790527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
36, 16
               

               
Conread position:
               
93-483
               

               
Cow position:
               
chr11:7488854-7489246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
41, 130
               

               
Conread position:
               
96-678
               

               
Cow position:
               
chr11:72365475-72366078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 212
               

               
Conread position:
               
101-689
               

               
Cow position:
               
chr11:3495343-3495942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
612
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 16
               

               
Conread position:
               
101-689
               

               
Cow position:
               
chr11:15835218-15835811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 34
               

               
Conread position:
               
119-665
               

               
Cow position:
               
chr11:44515460-44514896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 199
               

               
Conread position:
               
119-689
               

               
Cow position:
               
chr11:44516856-44516270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 199
               

               
Conread position:
               
119-689
               

               
Cow position:
               
chr11:50834444-50833860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 199
               

               
Conread position:
               
120-693
               

               
Cow position:
               
chr11:50511357-50510768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 198
               

               
Conread position:
               
124-395
               

               
Cow position:
               
chr11:25183384-25183650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
41, 109
               

               
Conread position:
               
124-439
               

               
Cow position:
               
chr11:49484554-49484871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
42, 62
               

               
Conread position:
               
124-620
               

               
Cow position:
               
chr11:82146318-82145826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 65
               

               
Conread position:
               
124-678
               

               
Cow position:
               
chr11:3682518-3681952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
583
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 7
               

               
Conread position:
               
125-395
               

               
Cow position:
               
chr11:7482752-7483014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
159, 40
               

               
Conread position:
               
131-437
               

               
Cow position:
               
chr11:9387466-9387159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
258, 186
               

               
Conread position:
               
135-471
               

               
Cow position:
               
chr11:13087988-13088330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 183
               

               
Conread position:
               
135-478
               

               
Cow position:
               
chr11:17280251-17279904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
6, 83
               

               
Conread position:
               
138-677
               

               
Cow position:
               
chr11:13568228-13567687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
27, 11
               

               
Conread position:
               
141-689
               

               
Cow position:
               
chr11:63653342-63652776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
253, 176
               

               
Conread position:
               
148-689
               

               
Cow position:
               
chr11:35738999-35738443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 173
               

               
Conread position:
               
149-615
               

               
Cow position:
               
chr11:28422191-28422672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
16, 28
               

               
Conread position:
               
150-689
               

               
Cow position:
               
chr11:64353977-64353423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 168
               

               
Conread position:
               
165-601
               

               
Cow position:
               
chr11:75870504-75870070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
242, 13
               

               
Conread position:
               
165-692
               

               
Cow position:
               
chr11:3229481-3230014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 18
               

               
Conread position:
               
166-626
               

               
Cow position:
               
chr11:50136473-50135998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 136
               

               
Conread position:
               
168-669
               

               
Cow position:
               
chr11:60604458-60604972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 165
               

               
Conread position:
               
168-674
               

               
Cow position:
               
chr11:18889732-18890220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 41
               

               
Conread position:
               
181-573
               

               
Cow position:
               
chr11:72869121-72869507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
33, 11
               

               
Conread position:
               
181-689
               

               
Cow position:
               
chr11:62874331-62873799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
59, 25
               

               
Conread position:
               
182-468
               

               
Cow position:
               
chr11:81068546-81068830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
98, 119
               

               
Conread position:
               
184-666
               

               
Cow position:
               
chr11:62612656-62613132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
9, 86
               

               
Conread position:
               
188-478
               

               
Cow position:
               
chr11:31531534-31531818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
208, 126
               

               
Conread position:
               
188-689
               

               
Cow position:
               
chr11:35542684-35542169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 129
               

               
Conread position:
               
188-689
               

               
Cow position:
               
chr11:63861252-63860744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 126
               

               
Conread position:
               
188-716
               

               
Cow position:
               
chr11:35263418-35262874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 131
               

               
Conread position:
               
189-689
               

               
Cow position:
               
chr11:9707533-9708047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 128
               

               
Conread position:
               
190-669
               

               
Cow position:
               
chr11:80472550-80472076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 91
               

               
Conread position:
               
208-682
               

               
Cow position:
               
chr11:7318436-7318918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
89, 367
               

               
Conread position:
               
209-698
               

               
Cow position:
               
chr11:39600456-39599955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 95
               

               
Conread position:
               
224-452
               

               
Cow position:
               
chr11:40457338-40457570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
56, 91
               

               
Conread position:
               
225-570
               

               
Cow position:
               
chr11:8837265-8836921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
253, 104
               

               
Conread position:
               
225-678
               

               
Cow position:
               
chr11:34022369-34022817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
261, 92
               

               
Conread position:
               
225-710
               

               
Cow position:
               
chr11:38640372-38640867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 92
               

               
Conread position:
               
229-425
               

               
Cow position:
               
chr11:39472738-39472936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
159, 15
               

               
Conread position:
               
234-464
               

               
Cow position:
               
chr11:75361392-75361160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
163, 79
               

               
Conread position:
               
242-700
               

               
Cow position:
               
chr11:81317851-81317374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
69, 7
               

               
Conread position:
               
244-681
               

               
Cow position:
               
chr11:7680404-7680856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
144, 73
               

               
Conread position:
               
247-689
               

               
Cow position:
               
chr11:79749440-79748983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 56
               

               
Conread position:
               
249-678
               

               
Cow position:
               
chr11:27922240-27922684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
149, 54
               

               
Conread position:
               
251-689
               

               
Cow position:
               
chr11:41313743-41314195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 66
               

               
Conread position:
               
252-678
               

               
Cow position:
               
chr11:75511744-75511301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
137, 65
               

               
Conread position:
               
254-678
               

               
Cow position:
               
chr11:27074526-27074941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
81, 63
               

               
Conread position:
               
255-680
               

               
Cow position:
               
chr11:59005098-59004666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
134, 61
               

               
Conread position:
               
256-678
               

               
Cow position:
               
chr11:11256524-11256957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
135, 65
               

               
Conread position:
               
258-693
               

               
Cow position:
               
chr11:1285671-1285218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
38, 322
               

               
Conread position:
               
264-485
               

               
Cow position:
               
chr11:27283448-27283674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
31, 51
               

               
Conread position:
               
264-709
               

               
Cow position:
               
chr11:57755458-57755001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
38, 74
               

               
Conread position:
               
270-660
               

               
Cow position:
               
chr11:56891749-56891347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
131, 44
               

               
Conread position:
               
270-663
               

               
Cow position:
               
chr11:2568207-2567803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
126, 43
               

               
Conread position:
               
271-616
               

               
Cow position:
               
chr11:9238572-9238929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
94, 46
               

               
Conread position:
               
272-721
               

               
Cow position:
               
chr11:75553317-75552858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
90, 45
               

               
Conread position:
               
289-689
               

               
Cow position:
               
chr11:31892438-31892841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
28, 42
               

               
Conread position:
               
294-631
               

               
Cow position:
               
chr11:52936293-52936649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
26, 292
               

               
Conread position:
               
307-620
               

               
Cow position:
               
chr11:42556023-42556338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
89, 22
               

               
Conread position:
               
307-703
               

               
Cow position:
               
chr11:48168559-48168147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
87, 25
               

               
Conread position:
               
308-548
               

               
Cow position:
               
chr11:81923026-81922773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
88, 22
               

               
Conread position:
               
318-689
               

               
Cow position:
               
chr11:52247451-52247820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
5, 129
               

               
Conread position:
               
324-729
               

               
Cow position:
               
chr11:54650346-54649934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 262
               

               
Conread position:
               
329-689
               

               
Cow position:
               
chr11:11052652-11052294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
65, 46
               

               
Conread position:
               
334-665
               

               
Cow position:
               
chr11:54280207-54279857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
60, 247
               

               
Conread position:
               
340-689
               

               
Cow position:
               
chr11:8266348-8266714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
56, 237
               

               
Conread position:
               
362-689
               

               
Cow position:
               
chr11:29613947-29614291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
42, 227
               

               
Conread position:
               
362-689
               

               
Cow position:
               
chr11:30928937-30929281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
32, 171
               

               
Conread position:
               
368-697
               

               
Cow position:
               
chr11:21879216-21878882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
83, 37
               

               
Conread position:
               
369-689
               

               
Cow position:
               
chr11:67920763-67920439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
41, 28
               

               
Conread position:
               
369-693
               

               
Cow position:
               
chr11:53690184-53690512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
38, 13
               

               
Conread position:
               
379-674
               

               
Cow position:
               
chr11:84214141-84213841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
12, 162
               

               
Conread position:
               
414-679
               

               
Cow position:
               
chr11:78703537-78703810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
40, 139
               

               
Conread position:
               
427-689
               

               
Cow position:
               
chr11:12177715-12177987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
51, 98
               
Show alignments to all cow chromosomes.