Cow genome map
| Conread name: | Utr1-UTR010050E01 |
| Conread position: | 1-622 |
| Cow position: | chr12:3363417-3364061 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 142 |
| Conread position: | 1-678 |
| Cow position: | chr12:11100720-11101421 (view UCSC Genome Browser custom track) |
| Alignm length: | 708 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 325 |
| Conread position: | 1-681 |
| Cow position: | chr12:30686217-30686918 (view UCSC Genome Browser custom track) |
| Alignm length: | 707 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 291 |
| Conread position: | 1-706 |
| Cow position: | chr12:1407308-1408030 (view UCSC Genome Browser custom track) |
| Alignm length: | 734 |
| Alignm identity: | 479 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 323 |
| Conread position: | 2-477 |
| Cow position: | chr12:22593231-22593718 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 324 |
| Conread position: | 2-669 |
| Cow position: | chr12:42192713-42193378 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 87 |
| Conread position: | 2-689 |
| Cow position: | chr12:20846611-20847320 (view UCSC Genome Browser custom track) |
| Alignm length: | 717 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 311 |
| Conread position: | 3-402 |
| Cow position: | chr12:22571321-22571722 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 301 |
| Conread position: | 3-477 |
| Cow position: | chr12:34964824-34964337 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 323 |
| Conread position: | 3-581 |
| Cow position: | chr12:36406194-36405590 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 309 |
| Conread position: | 3-688 |
| Cow position: | chr12:42605702-42604994 (view UCSC Genome Browser custom track) |
| Alignm length: | 717 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 323 |
| Conread position: | 3-689 |
| Cow position: | chr12:10358172-10358878 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 323 |
| Conread position: | 3-689 |
| Cow position: | chr12:12929409-12928724 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 171 |
| Conread position: | 3-689 |
| Cow position: | chr12:32656029-32656731 (view UCSC Genome Browser custom track) |
| Alignm length: | 717 |
| Alignm identity: | 473 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 323 |
| Conread position: | 3-689 |
| Cow position: | chr12:34175831-34176547 (view UCSC Genome Browser custom track) |
| Alignm length: | 724 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 316 |
| Conread position: | 3-689 |
| Cow position: | chr12:37561482-37562189 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 306 |
| Conread position: | 3-689 |
| Cow position: | chr12:38892836-38893546 (view UCSC Genome Browser custom track) |
| Alignm length: | 719 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 309 |
| Conread position: | 3-693 |
| Cow position: | chr12:17717775-17718488 (view UCSC Genome Browser custom track) |
| Alignm length: | 722 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 323 |
| Conread position: | 3-693 |
| Cow position: | chr12:22747688-22748402 (view UCSC Genome Browser custom track) |
| Alignm length: | 723 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 101 |
| Conread position: | 3-693 |
| Cow position: | chr12:25266859-25266146 (view UCSC Genome Browser custom track) |
| Alignm length: | 722 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 323 |
| Conread position: | 3-693 |
| Cow position: | chr12:35548654-35547941 (view UCSC Genome Browser custom track) |
| Alignm length: | 725 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 65 |
| Conread position: | 3-696 |
| Cow position: | chr12:1886873-1886169 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 46 |
| Conread position: | 12-678 |
| Cow position: | chr12:8137481-8136817 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 103 |
| Conread position: | 14-634 |
| Cow position: | chr12:27515147-27515780 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 171 |
| Conread position: | 17-624 |
| Cow position: | chr12:12295028-12295651 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 81 |
| Conread position: | 18-693 |
| Cow position: | chr12:6106859-6106161 (view UCSC Genome Browser custom track) |
| Alignm length: | 708 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 308 |
| Conread position: | 26-693 |
| Cow position: | chr12:1437425-1438097 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 300 |
| Conread position: | 42-599 |
| Cow position: | chr12:19861212-19861781 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 280 |
| Conread position: | 45-478 |
| Cow position: | chr12:46975920-46976364 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 308 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 82, 32 |
| Conread position: | 59-657 |
| Cow position: | chr12:16674559-16675157 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 24 |
| Conread position: | 59-681 |
| Cow position: | chr12:41464247-41463604 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 34 |
| Conread position: | 59-689 |
| Cow position: | chr12:14569280-14568632 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 80 |
| Conread position: | 68-383 |
| Cow position: | chr12:12241618-12241932 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 217 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 97, 72 |
| Conread position: | 71-693 |
| Cow position: | chr12:62662-62020 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 237 |
| Conread position: | 73-585 |
| Cow position: | chr12:10542482-10541962 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 58 |
| Conread position: | 79-678 |
| Cow position: | chr12:487249-487840 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 410 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 40, 35 |
| Conread position: | 94-644 |
| Cow position: | chr12:21091202-21090640 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 226 |
| Conread position: | 123-678 |
| Cow position: | chr12:8628597-8628028 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 375 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 42, 198 |
| Conread position: | 124-532 |
| Cow position: | chr12:35263114-35263527 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 55 |
| Conread position: | 140-699 |
| Cow position: | chr12:25144083-25143537 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 43 |
| Conread position: | 148-627 |
| Cow position: | chr12:1469498-1469002 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 170 |
| Conread position: | 149-689 |
| Cow position: | chr12:24980349-24980903 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 155 |
| Conread position: | 166-473 |
| Cow position: | chr12:36250110-36250406 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 154, 64 |
| Conread position: | 166-688 |
| Cow position: | chr12:758066-758602 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 38 |
| Conread position: | 178-689 |
| Cow position: | chr12:1512106-1511581 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 125 |
| Conread position: | 178-704 |
| Cow position: | chr12:28764344-28763803 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 139 |
| Conread position: | 183-689 |
| Cow position: | chr12:31028153-31027637 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 8 |
| Conread position: | 183-714 |
| Cow position: | chr12:21658484-21659017 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 353 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 31, 39 |
| Conread position: | 189-477 |
| Cow position: | chr12:15539467-15539760 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 205, 126 |
| Conread position: | 189-494 |
| Cow position: | chr12:21309384-21309071 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 56, 42 |
| Conread position: | 189-693 |
| Cow position: | chr12:39929837-39930356 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 128 |
| Conread position: | 204-693 |
| Cow position: | chr12:27958842-27958338 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 99 |
| Conread position: | 213-478 |
| Cow position: | chr12:26822378-26822648 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 59, 10 |
| Conread position: | 213-678 |
| Cow position: | chr12:27506956-27506476 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 104 |
| Conread position: | 216-419 |
| Cow position: | chr12:4200313-4200517 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 178, 101 |
| Conread position: | 223-693 |
| Cow position: | chr12:5328206-5327722 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 80 |
| Conread position: | 224-666 |
| Cow position: | chr12:46163443-46163901 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 79 |
| Conread position: | 239-678 |
| Cow position: | chr12:20460000-20459546 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 310 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 155, 78 |
| Conread position: | 245-450 |
| Cow position: | chr12:20334252-20334468 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 79, 69 |
| Conread position: | 258-641 |
| Cow position: | chr12:536831-536431 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 136, 45 |
| Conread position: | 270-568 |
| Cow position: | chr12:21211498-21211813 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 124, 47 |
| Conread position: | 272-693 |
| Cow position: | chr12:24696298-24696733 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 45 |
| Conread position: | 304-623 |
| Cow position: | chr12:8727905-8728228 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 92, 19 |
| Conread position: | 305-692 |
| Cow position: | chr12:26870091-26870493 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 276 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 98, 27 |
| Conread position: | 306-663 |
| Cow position: | chr12:250528-250154 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 248 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 83, 26 |
| Conread position: | 327-626 |
| Cow position: | chr12:13115779-13115472 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 57, 167 |
| Conread position: | 333-693 |
| Cow position: | chr12:25148808-25148430 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 55, 247 |
| Conread position: | 337-689 |
| Cow position: | chr12:30501454-30501823 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 249 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 52, 252 |
| Conread position: | 361-693 |
| Cow position: | chr12:4758966-4758642 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 217 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 135, 33 |
| Conread position: | 368-689 |
| Cow position: | chr12:1491011-1491349 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 241 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 26, 61 |
| Conread position: | 373-689 |
| Cow position: | chr12:32757546-32757879 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 21, 207 |
| Conread position: | 374-566 |
| Cow position: | chr12:4378988-4378789 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 33, 10 |
| Conread position: | 387-670 |
| Cow position: | chr12:42194508-42194799 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 205 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 89, 12 |
| Conread position: | 390-689 |
| Cow position: | chr12:5106930-5107240 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 20, 137 |
| Conread position: | 395-693 |
| Cow position: | chr12:35161485-35161795 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 15, 132 |
| Conread position: | 395-693 |
| Cow position: | chr12:35162641-35162951 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 15, 132 |
| Conread position: | 404-689 |
| Cow position: | chr12:42558164-42557882 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 76, 159 |
Show alignments to all cow chromosomes.