Cow genome map

Conread name: Utr1-UTR010050E01

Conread position: 1-401
Cow position: chr17:41412200-41412599 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 269
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 121, 52

Conread position: 1-451
Cow position: chr17:18197227-18197684 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 308
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 36, 220

Conread position: 1-626
Cow position: chr17:5999132-5998492 (view UCSC Genome Browser custom track)
Alignm length: 660
Alignm identity: 421
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 53, 160

Conread position: 1-657
Cow position: chr17:24311200-24311866 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 53

Conread position: 1-675
Cow position: chr17:732138-731443 (view UCSC Genome Browser custom track)
Alignm length: 704
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 328

Conread position: 1-678
Cow position: chr17:20694555-20695258 (view UCSC Genome Browser custom track)
Alignm length: 712
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 134

Conread position: 1-688
Cow position: chr17:4062687-4063399 (view UCSC Genome Browser custom track)
Alignm length: 717
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 326

Conread position: 1-688
Cow position: chr17:22562503-22563204 (view UCSC Genome Browser custom track)
Alignm length: 716
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 271

Conread position: 1-689
Cow position: chr17:6070892-6071595 (view UCSC Genome Browser custom track)
Alignm length: 713
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 159

Conread position: 1-689
Cow position: chr17:6262218-6262916 (view UCSC Genome Browser custom track)
Alignm length: 714
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 130

Conread position: 1-689
Cow position: chr17:15853078-15853794 (view UCSC Genome Browser custom track)
Alignm length: 724
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 325

Conread position: 1-689
Cow position: chr17:20085421-20084753 (view UCSC Genome Browser custom track)
Alignm length: 710
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 107

Conread position: 1-689
Cow position: chr17:24291994-24292695 (view UCSC Genome Browser custom track)
Alignm length: 715
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 60

Conread position: 1-693
Cow position: chr17:3314456-3315146 (view UCSC Genome Browser custom track)
Alignm length: 716
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 200

Conread position: 1-693
Cow position: chr17:17132708-17133409 (view UCSC Genome Browser custom track)
Alignm length: 719
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 53

Conread position: 1-707
Cow position: chr17:3550894-3550168 (view UCSC Genome Browser custom track)
Alignm length: 742
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 28

Conread position: 3-396
Cow position: chr17:1705759-1706158 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 13

Conread position: 3-455
Cow position: chr17:5307379-5306913 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 323

Conread position: 3-477
Cow position: chr17:8211011-8211501 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 324

Conread position: 3-480
Cow position: chr17:28025720-28025230 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 18

Conread position: 3-663
Cow position: chr17:2264545-2265231 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 323

Conread position: 3-663
Cow position: chr17:27792423-27791740 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 309

Conread position: 3-675
Cow position: chr17:1655394-1654714 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 251

Conread position: 3-678
Cow position: chr17:8204286-8204997 (view UCSC Genome Browser custom track)
Alignm length: 722
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 238

Conread position: 3-678
Cow position: chr17:14242184-14242880 (view UCSC Genome Browser custom track)
Alignm length: 702
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 309

Conread position: 3-688
Cow position: chr17:1882626-1883307 (view UCSC Genome Browser custom track)
Alignm length: 711
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 117

Conread position: 3-689
Cow position: chr17:15709633-15708933 (view UCSC Genome Browser custom track)
Alignm length: 714
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 132

Conread position: 3-689
Cow position: chr17:15808331-15809047 (view UCSC Genome Browser custom track)
Alignm length: 725
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 323

Conread position: 3-689
Cow position: chr17:29825605-29824901 (view UCSC Genome Browser custom track)
Alignm length: 714
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 51

Conread position: 3-689
Cow position: chr17:43990837-43991548 (view UCSC Genome Browser custom track)
Alignm length: 722
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 198

Conread position: 3-696
Cow position: chr17:6122138-6122850 (view UCSC Genome Browser custom track)
Alignm length: 722
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 58

Conread position: 8-639
Cow position: chr17:10799577-10798937 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 78

Conread position: 8-681
Cow position: chr17:3327485-3328184 (view UCSC Genome Browser custom track)
Alignm length: 712
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 62

Conread position: 8-689
Cow position: chr17:4481516-4480822 (view UCSC Genome Browser custom track)
Alignm length: 713
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 203

Conread position: 8-689
Cow position: chr17:15140975-15140279 (view UCSC Genome Browser custom track)
Alignm length: 709
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 8

Conread position: 9-509
Cow position: chr17:23040733-23041228 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 45

Conread position: 9-612
Cow position: chr17:2582645-2583271 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 177

Conread position: 9-689
Cow position: chr17:24027631-24026923 (view UCSC Genome Browser custom track)
Alignm length: 714
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 336

Conread position: 12-478
Cow position: chr17:30375593-30376064 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 322
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 32, 154

Conread position: 17-396
Cow position: chr17:44402726-44403100 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 247
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 54, 43

Conread position: 17-423
Cow position: chr17:760162-760561 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 283
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 32, 44

Conread position: 17-699
Cow position: chr17:36000323-35999643 (view UCSC Genome Browser custom track)
Alignm length: 708
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 40

Conread position: 22-689
Cow position: chr17:15373782-15374465 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 304

Conread position: 42-677
Cow position: chr17:39838267-39837611 (view UCSC Genome Browser custom track)
Alignm length: 668
Alignm identity: 418
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 13, 26

Conread position: 45-395
Cow position: chr17:3646939-3646590 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 249
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 83, 55

Conread position: 45-446
Cow position: chr17:17530581-17530997 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 100

Conread position: 45-707
Cow position: chr17:13707153-13707818 (view UCSC Genome Browser custom track)
Alignm length: 685
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 252

Conread position: 45-707
Cow position: chr17:34567200-34567877 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 151

Conread position: 48-464
Cow position: chr17:19789640-19790059 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 78

Conread position: 54-707
Cow position: chr17:19406902-19406221 (view UCSC Genome Browser custom track)
Alignm length: 698
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 6

Conread position: 57-431
Cow position: chr17:27482795-27483179 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 160

Conread position: 60-646
Cow position: chr17:15191709-15191126 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 390
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 67, 19

Conread position: 64-663
Cow position: chr17:29075901-29075314 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 67

Conread position: 64-690
Cow position: chr17:41918649-41919247 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 68

Conread position: 67-678
Cow position: chr17:6080935-6081556 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 40

Conread position: 81-627
Cow position: chr17:4162013-4161455 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 130

Conread position: 83-678
Cow position: chr17:26346831-26346240 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 100

Conread position: 94-562
Cow position: chr17:38947547-38948011 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 9

Conread position: 96-693
Cow position: chr17:20390222-20390839 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 212

Conread position: 100-680
Cow position: chr17:33935387-33934786 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 227

Conread position: 103-624
Cow position: chr17:14871146-14871668 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 300, 28

Conread position: 114-689
Cow position: chr17:183619-184207 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 277, 186

Conread position: 119-689
Cow position: chr17:40810225-40810811 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 200

Conread position: 124-706
Cow position: chr17:2838512-2839116 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 194

Conread position: 135-455
Cow position: chr17:11189513-11189840 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 222
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 29, 95

Conread position: 154-689
Cow position: chr17:19215886-19215335 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 165

Conread position: 157-674
Cow position: chr17:15718856-15719389 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 147

Conread position: 166-477
Cow position: chr17:14005911-14006230 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 215
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 193, 27

Conread position: 168-689
Cow position: chr17:33791634-33792143 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 344
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 220, 15

Conread position: 172-673
Cow position: chr17:9073678-9074195 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 146

Conread position: 184-689
Cow position: chr17:39913937-39913425 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 42

Conread position: 187-550
Cow position: chr17:42383537-42383161 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 147

Conread position: 194-681
Cow position: chr17:18100879-18101365 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 34

Conread position: 204-477
Cow position: chr17:12674885-12674607 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 193
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 190, 113

Conread position: 211-566
Cow position: chr17:17088018-17087656 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 251
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 171, 16

Conread position: 211-568
Cow position: chr17:5546812-5546437 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 257
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 160, 106

Conread position: 224-689
Cow position: chr17:138194-138668 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 93

Conread position: 225-451
Cow position: chr17:31311661-31311437 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 159
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 92, 108

Conread position: 231-690
Cow position: chr17:21770268-21770741 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 21

Conread position: 237-477
Cow position: chr17:3709535-3709290 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 166
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 157, 67

Conread position: 242-722
Cow position: chr17:27977721-27978203 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 22

Conread position: 248-437
Cow position: chr17:21185538-21185344 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 138
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 51, 85

Conread position: 251-689
Cow position: chr17:1969760-1970211 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 52

Conread position: 251-723
Cow position: chr17:12133387-12132907 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 336
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 143, 64

Conread position: 253-669
Cow position: chr17:41479580-41479158 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 293
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 26, 51

Conread position: 265-673
Cow position: chr17:1457758-1457338 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 291
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 129, 52

Conread position: 297-689
Cow position: chr17:18722225-18721818 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 275
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 101, 37

Conread position: 304-576
Cow position: chr17:9745613-9745900 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 199
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 15, 30

Conread position: 316-707
Cow position: chr17:10286185-10285774 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 26

Conread position: 317-689
Cow position: chr17:16118775-16118399 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 263
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 86, 124

Conread position: 319-678
Cow position: chr17:5043913-5043542 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 252
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 72, 17

Conread position: 333-681
Cow position: chr17:11775540-11775188 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 35

Conread position: 386-660
Cow position: chr17:8994314-8994601 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 198
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 24, 141

Conread position: 409-689
Cow position: chr17:38917257-38916968 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 207
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 67, 116

Conread position: 412-623
Cow position: chr17:29820909-29821131 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 156
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 47, 114

Conread position: 412-689
Cow position: chr17:44641696-44641410 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 204
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 64, 113

Conread position: 412-693
Cow position: chr17:15325461-15325171 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 208
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 64, 125

Show alignments to all cow chromosomes.