Cow genome map


           Conread name:
           Utr1-UTR010050E01
        

               Conread position:
               1-401
               

               Cow position:
               
               

               Alignm length:
               410
               

               Alignm identity:
               269
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               121, 52
               

               Conread position:
               1-451
               

               Cow position:
               
               

               Alignm length:
               472
               

               Alignm identity:
               308
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               36, 220
               

               Conread position:
               1-626
               

               Cow position:
               
               

               Alignm length:
               660
               

               Alignm identity:
               421
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               53, 160
               

               Conread position:
               1-657
               

               Cow position:
               
               

               Alignm length:
               691
               

               Alignm identity:
               459
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               159, 53
               

               Conread position:
               1-675
               

               Cow position:
               
               

               Alignm length:
               704
               

               Alignm identity:
               486
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 328
               

               Conread position:
               1-678
               

               Cow position:
               
               

               Alignm length:
               712
               

               Alignm identity:
               494
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 134
               

               Conread position:
               1-688
               

               Cow position:
               
               

               Alignm length:
               717
               

               Alignm identity:
               484
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 326
               

               Conread position:
               1-688
               

               Cow position:
               
               

               Alignm length:
               716
               

               Alignm identity:
               477
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 271
               

               Conread position:
               1-689
               

               Cow position:
               
               

               Alignm length:
               713
               

               Alignm identity:
               484
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 159
               

               Conread position:
               1-689
               

               Cow position:
               
               

               Alignm length:
               714
               

               Alignm identity:
               481
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 130
               

               Conread position:
               1-689
               

               Cow position:
               
               

               Alignm length:
               724
               

               Alignm identity:
               490
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 325
               

               Conread position:
               1-689
               

               Cow position:
               
               

               Alignm length:
               710
               

               Alignm identity:
               466
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 107
               

               Conread position:
               1-689
               

               Cow position:
               
               

               Alignm length:
               715
               

               Alignm identity:
               472
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 60
               

               Conread position:
               1-693
               

               Cow position:
               
               

               Alignm length:
               716
               

               Alignm identity:
               485
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 200
               

               Conread position:
               1-693
               

               Cow position:
               
               

               Alignm length:
               719
               

               Alignm identity:
               480
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 53
               

               Conread position:
               1-707
               

               Cow position:
               
               

               Alignm length:
               742
               

               Alignm identity:
               514
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 28
               

               Conread position:
               3-396
               

               Cow position:
               
               

               Alignm length:
               406
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 13
               

               Conread position:
               3-455
               

               Cow position:
               
               

               Alignm length:
               470
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 323
               

               Conread position:
               3-477
               

               Cow position:
               
               

               Alignm length:
               494
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 324
               

               Conread position:
               3-480
               

               Cow position:
               
               

               Alignm length:
               495
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 18
               

               Conread position:
               3-663
               

               Cow position:
               
               

               Alignm length:
               692
               

               Alignm identity:
               490
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 323
               

               Conread position:
               3-663
               

               Cow position:
               
               

               Alignm length:
               693
               

               Alignm identity:
               483
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 309
               

               Conread position:
               3-675
               

               Cow position:
               
               

               Alignm length:
               697
               

               Alignm identity:
               464
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 251
               

               Conread position:
               3-678
               

               Cow position:
               
               

               Alignm length:
               722
               

               Alignm identity:
               477
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 238
               

               Conread position:
               3-678
               

               Cow position:
               
               

               Alignm length:
               702
               

               Alignm identity:
               478
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 309
               

               Conread position:
               3-688
               

               Cow position:
               
               

               Alignm length:
               711
               

               Alignm identity:
               467
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 117
               

               Conread position:
               3-689
               

               Cow position:
               
               

               Alignm length:
               714
               

               Alignm identity:
               493
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 132
               

               Conread position:
               3-689
               

               Cow position:
               
               

               Alignm length:
               725
               

               Alignm identity:
               496
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 323
               

               Conread position:
               3-689
               

               Cow position:
               
               

               Alignm length:
               714
               

               Alignm identity:
               495
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 51
               

               Conread position:
               3-689
               

               Cow position:
               
               

               Alignm length:
               722
               

               Alignm identity:
               492
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 198
               

               Conread position:
               3-696
               

               Cow position:
               
               

               Alignm length:
               722
               

               Alignm identity:
               489
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 58
               

               Conread position:
               8-639
               

               Cow position:
               
               

               Alignm length:
               652
               

               Alignm identity:
               456
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 78
               

               Conread position:
               8-681
               

               Cow position:
               
               

               Alignm length:
               712
               

               Alignm identity:
               478
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 62
               

               Conread position:
               8-689
               

               Cow position:
               
               

               Alignm length:
               713
               

               Alignm identity:
               493
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 203
               

               Conread position:
               8-689
               

               Cow position:
               
               

               Alignm length:
               709
               

               Alignm identity:
               481
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 8
               

               Conread position:
               9-509
               

               Cow position:
               
               

               Alignm length:
               508
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 45
               

               Conread position:
               9-612
               

               Cow position:
               
               

               Alignm length:
               632
               

               Alignm identity:
               434
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 177
               

               Conread position:
               9-689
               

               Cow position:
               
               

               Alignm length:
               714
               

               Alignm identity:
               487
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 336
               

               Conread position:
               12-478
               

               Cow position:
               
               

               Alignm length:
               486
               

               Alignm identity:
               322
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               32, 154
               

               Conread position:
               17-396
               

               Cow position:
               
               

               Alignm length:
               389
               

               Alignm identity:
               247
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               54, 43
               

               Conread position:
               17-423
               

               Cow position:
               
               

               Alignm length:
               418
               

               Alignm identity:
               283
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               32, 44
               

               Conread position:
               17-699
               

               Cow position:
               
               

               Alignm length:
               708
               

               Alignm identity:
               484
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 40
               

               Conread position:
               22-689
               

               Cow position:
               
               

               Alignm length:
               697
               

               Alignm identity:
               465
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 304
               

               Conread position:
               42-677
               

               Cow position:
               
               

               Alignm length:
               668
               

               Alignm identity:
               418
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               13, 26
               

               Conread position:
               45-395
               

               Cow position:
               
               

               Alignm length:
               360
               

               Alignm identity:
               249
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               83, 55
               

               Conread position:
               45-446
               

               Cow position:
               
               

               Alignm length:
               419
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 100
               

               Conread position:
               45-707
               

               Cow position:
               
               

               Alignm length:
               685
               

               Alignm identity:
               453
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 252
               

               Conread position:
               45-707
               

               Cow position:
               
               

               Alignm length:
               695
               

               Alignm identity:
               474
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 151
               

               Conread position:
               48-464
               

               Cow position:
               
               

               Alignm length:
               426
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 78
               

               Conread position:
               54-707
               

               Cow position:
               
               

               Alignm length:
               698
               

               Alignm identity:
               471
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 6
               

               Conread position:
               57-431
               

               Cow position:
               
               

               Alignm length:
               390
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 160
               

               Conread position:
               60-646
               

               Cow position:
               
               

               Alignm length:
               608
               

               Alignm identity:
               390
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               67, 19
               

               Conread position:
               64-663
               

               Cow position:
               
               

               Alignm length:
               612
               

               Alignm identity:
               412
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 67
               

               Conread position:
               64-690
               

               Cow position:
               
               

               Alignm length:
               641
               

               Alignm identity:
               430
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               102, 68
               

               Conread position:
               67-678
               

               Cow position:
               
               

               Alignm length:
               639
               

               Alignm identity:
               412
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 40
               

               Conread position:
               81-627
               

               Cow position:
               
               

               Alignm length:
               568
               

               Alignm identity:
               382
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 130
               

               Conread position:
               83-678
               

               Cow position:
               
               

               Alignm length:
               610
               

               Alignm identity:
               393
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 100
               

               Conread position:
               94-562
               

               Cow position:
               
               

               Alignm length:
               483
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 9
               

               Conread position:
               96-693
               

               Cow position:
               
               

               Alignm length:
               626
               

               Alignm identity:
               434
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 212
               

               Conread position:
               100-680
               

               Cow position:
               
               

               Alignm length:
               610
               

               Alignm identity:
               412
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 227
               

               Conread position:
               103-624
               

               Cow position:
               
               

               Alignm length:
               536
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               300, 28
               

               Conread position:
               114-689
               

               Cow position:
               
               

               Alignm length:
               599
               

               Alignm identity:
               376
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               277, 186
               

               Conread position:
               119-689
               

               Cow position:
               
               

               Alignm length:
               595
               

               Alignm identity:
               407
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 200
               

               Conread position:
               124-706
               

               Cow position:
               
               

               Alignm length:
               611
               

               Alignm identity:
               413
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               175, 194
               

               Conread position:
               135-455
               

               Cow position:
               
               

               Alignm length:
               335
               

               Alignm identity:
               222
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               29, 95
               

               Conread position:
               154-689
               

               Cow position:
               
               

               Alignm length:
               560
               

               Alignm identity:
               377
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 165
               

               Conread position:
               157-674
               

               Cow position:
               
               

               Alignm length:
               541
               

               Alignm identity:
               372
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 147
               

               Conread position:
               166-477
               

               Cow position:
               
               

               Alignm length:
               323
               

               Alignm identity:
               215
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               193, 27
               

               Conread position:
               168-689
               

               Cow position:
               
               

               Alignm length:
               533
               

               Alignm identity:
               344
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               220, 15
               

               Conread position:
               172-673
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 146
               

               Conread position:
               184-689
               

               Cow position:
               
               

               Alignm length:
               521
               

               Alignm identity:
               360
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               174, 42
               

               Conread position:
               187-550
               

               Cow position:
               
               

               Alignm length:
               382
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 147
               

               Conread position:
               194-681
               

               Cow position:
               
               

               Alignm length:
               498
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               204, 34
               

               Conread position:
               204-477
               

               Cow position:
               
               

               Alignm length:
               282
               

               Alignm identity:
               193
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               190, 113
               

               Conread position:
               211-566
               

               Cow position:
               
               

               Alignm length:
               371
               

               Alignm identity:
               251
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               171, 16
               

               Conread position:
               211-568
               

               Cow position:
               
               

               Alignm length:
               381
               

               Alignm identity:
               257
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               160, 106
               

               Conread position:
               224-689
               

               Cow position:
               
               

               Alignm length:
               486
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               170, 93
               

               Conread position:
               225-451
               

               Cow position:
               
               

               Alignm length:
               230
               

               Alignm identity:
               159
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               92, 108
               

               Conread position:
               231-690
               

               Cow position:
               
               

               Alignm length:
               482
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 21
               

               Conread position:
               237-477
               

               Cow position:
               
               

               Alignm length:
               249
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               157, 67
               

               Conread position:
               242-722
               

               Cow position:
               
               

               Alignm length:
               494
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               152, 22
               

               Conread position:
               248-437
               

               Cow position:
               
               

               Alignm length:
               197
               

               Alignm identity:
               138
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               51, 85
               

               Conread position:
               251-689
               

               Cow position:
               
               

               Alignm length:
               461
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               143, 52
               

               Conread position:
               251-723
               

               Cow position:
               
               

               Alignm length:
               497
               

               Alignm identity:
               336
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               143, 64
               

               Conread position:
               253-669
               

               Cow position:
               
               

               Alignm length:
               434
               

               Alignm identity:
               293
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               26, 51
               

               Conread position:
               265-673
               

               Cow position:
               
               

               Alignm length:
               430
               

               Alignm identity:
               291
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               129, 52
               

               Conread position:
               297-689
               

               Cow position:
               
               

               Alignm length:
               414
               

               Alignm identity:
               275
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               101, 37
               

               Conread position:
               304-576
               

               Cow position:
               
               

               Alignm length:
               292
               

               Alignm identity:
               199
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               15, 30
               

               Conread position:
               316-707
               

               Cow position:
               
               

               Alignm length:
               418
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 26
               

               Conread position:
               317-689
               

               Cow position:
               
               

               Alignm length:
               389
               

               Alignm identity:
               263
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               86, 124
               

               Conread position:
               319-678
               

               Cow position:
               
               

               Alignm length:
               377
               

               Alignm identity:
               252
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               72, 17
               

               Conread position:
               333-681
               

               Cow position:
               
               

               Alignm length:
               356
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 35
               

               Conread position:
               386-660
               

               Cow position:
               
               

               Alignm length:
               291
               

               Alignm identity:
               198
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               24, 141
               

               Conread position:
               409-689
               

               Cow position:
               
               

               Alignm length:
               295
               

               Alignm identity:
               207
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               67, 116
               

               Conread position:
               412-623
               

               Cow position:
               
               

               Alignm length:
               225
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               47, 114
               

               Conread position:
               412-689
               

               Cow position:
               
               

               Alignm length:
               292
               

               Alignm identity:
               204
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               64, 113
               

               Conread position:
               412-693
               

               Cow position:
               
               

               Alignm length:
               296
               

               Alignm identity:
               208
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               64, 125
               
Show alignments to all cow chromosomes.