Cow genome map

Conread name: Utr1-UTR010050E01

Conread position: 1-605
Cow position: chr19:55694129-55693528 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 416
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 46, 106

Conread position: 1-630
Cow position: chr19:45334174-45334821 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 412
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 13, 78

Conread position: 1-660
Cow position: chr19:7490678-7491360 (view UCSC Genome Browser custom track)
Alignm length: 688
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 308

Conread position: 1-675
Cow position: chr19:32719391-32720074 (view UCSC Genome Browser custom track)
Alignm length: 702
Alignm identity: 438
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 48, 193

Conread position: 1-689
Cow position: chr19:40913-41622 (view UCSC Genome Browser custom track)
Alignm length: 719
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 272

Conread position: 1-689
Cow position: chr19:3176054-3176750 (view UCSC Genome Browser custom track)
Alignm length: 713
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 79

Conread position: 1-689
Cow position: chr19:4388160-4388872 (view UCSC Genome Browser custom track)
Alignm length: 719
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 326

Conread position: 1-689
Cow position: chr19:12775703-12776399 (view UCSC Genome Browser custom track)
Alignm length: 710
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 120

Conread position: 1-689
Cow position: chr19:29088366-29089039 (view UCSC Genome Browser custom track)
Alignm length: 703
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 52

Conread position: 1-689
Cow position: chr19:39182959-39182251 (view UCSC Genome Browser custom track)
Alignm length: 715
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 324

Conread position: 1-689
Cow position: chr19:40017000-40016297 (view UCSC Genome Browser custom track)
Alignm length: 719
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 205

Conread position: 1-689
Cow position: chr19:40885166-40884464 (view UCSC Genome Browser custom track)
Alignm length: 711
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 326

Conread position: 1-693
Cow position: chr19:33875995-33876710 (view UCSC Genome Browser custom track)
Alignm length: 723
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 328

Conread position: 1-696
Cow position: chr19:5781938-5781238 (view UCSC Genome Browser custom track)
Alignm length: 722
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 37

Conread position: 1-716
Cow position: chr19:38559708-38558975 (view UCSC Genome Browser custom track)
Alignm length: 746
Alignm identity: 526
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 186

Conread position: 2-437
Cow position: chr19:40037658-40038081 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 306
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 48, 85

Conread position: 2-707
Cow position: chr19:18359723-18359028 (view UCSC Genome Browser custom track)
Alignm length: 726
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 143

Conread position: 3-477
Cow position: chr19:20107323-20107806 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 227

Conread position: 3-539
Cow position: chr19:474916-474354 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 309

Conread position: 3-565
Cow position: chr19:15445283-15444695 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 323

Conread position: 3-587
Cow position: chr19:52148964-52148361 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 58

Conread position: 3-614
Cow position: chr19:890616-889980 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 310

Conread position: 3-689
Cow position: chr19:165541-164843 (view UCSC Genome Browser custom track)
Alignm length: 712
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 51

Conread position: 3-689
Cow position: chr19:7481355-7480645 (view UCSC Genome Browser custom track)
Alignm length: 719
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 309

Conread position: 3-689
Cow position: chr19:20610914-20611623 (view UCSC Genome Browser custom track)
Alignm length: 718
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 268

Conread position: 3-693
Cow position: chr19:7344615-7345328 (view UCSC Genome Browser custom track)
Alignm length: 722
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 260

Conread position: 3-696
Cow position: chr19:28595957-28596672 (view UCSC Genome Browser custom track)
Alignm length: 730
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 39

Conread position: 4-693
Cow position: chr19:1292931-1293644 (view UCSC Genome Browser custom track)
Alignm length: 722
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 64

Conread position: 4-710
Cow position: chr19:33640657-33641383 (view UCSC Genome Browser custom track)
Alignm length: 737
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 13

Conread position: 9-383
Cow position: chr19:28741293-28740922 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 101

Conread position: 9-473
Cow position: chr19:3586554-3586085 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 172

Conread position: 9-477
Cow position: chr19:16318021-16317541 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 133

Conread position: 9-693
Cow position: chr19:30430134-30430833 (view UCSC Genome Browser custom track)
Alignm length: 725
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 61

Conread position: 10-611
Cow position: chr19:28642326-28642929 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 7

Conread position: 17-452
Cow position: chr19:33905665-33906099 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 31

Conread position: 17-675
Cow position: chr19:30560762-30561427 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 97

Conread position: 17-678
Cow position: chr19:1151278-1151942 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 17

Conread position: 18-689
Cow position: chr19:33944166-33944856 (view UCSC Genome Browser custom track)
Alignm length: 698
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 304

Conread position: 18-693
Cow position: chr19:38811015-38811677 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 22

Conread position: 20-708
Cow position: chr19:3113915-3114623 (view UCSC Genome Browser custom track)
Alignm length: 728
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 134

Conread position: 25-392
Cow position: chr19:3088718-3088345 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 254
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 14, 97

Conread position: 38-452
Cow position: chr19:28791047-28790651 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 283
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 90, 21

Conread position: 41-673
Cow position: chr19:2261804-2261168 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 35

Conread position: 42-687
Cow position: chr19:8207381-8206710 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 19

Conread position: 45-351
Cow position: chr19:39990554-39990254 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 55

Conread position: 45-605
Cow position: chr19:44755415-44754888 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 257, 35

Conread position: 45-677
Cow position: chr19:29970688-29970041 (view UCSC Genome Browser custom track)
Alignm length: 662
Alignm identity: 412
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 12, 59

Conread position: 45-678
Cow position: chr19:24672867-24672214 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 27

Conread position: 45-726
Cow position: chr19:5110701-5110006 (view UCSC Genome Browser custom track)
Alignm length: 710
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 29

Conread position: 51-386
Cow position: chr19:40794249-40793915 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 230
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 85, 119

Conread position: 54-464
Cow position: chr19:6439830-6440249 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 6

Conread position: 59-666
Cow position: chr19:15871989-15871366 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 29

Conread position: 63-492
Cow position: chr19:35078030-35077585 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 117

Conread position: 64-678
Cow position: chr19:45150208-45149592 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 117

Conread position: 72-449
Cow position: chr19:24597108-24596747 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 247
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 230, 56

Conread position: 73-653
Cow position: chr19:39695918-39696521 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 249

Conread position: 73-689
Cow position: chr19:19388488-19389123 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 19

Conread position: 93-678
Cow position: chr19:39944212-39943617 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 80

Conread position: 95-478
Cow position: chr19:47189773-47189382 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 226

Conread position: 95-623
Cow position: chr19:39885532-39885007 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 333
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 10, 55

Conread position: 120-693
Cow position: chr19:43148288-43148875 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 57

Conread position: 121-688
Cow position: chr19:4552389-4551837 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 137

Conread position: 121-689
Cow position: chr19:16479159-16478578 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 197

Conread position: 136-693
Cow position: chr19:55842716-55843298 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 56

Conread position: 147-472
Cow position: chr19:6981806-6981486 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 240
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 68, 31

Conread position: 149-678
Cow position: chr19:542880-542343 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 359
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 16, 98

Conread position: 165-396
Cow position: chr19:36149710-36149932 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 164
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 29, 0

Conread position: 169-689
Cow position: chr19:28801803-28801283 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 7

Conread position: 178-396
Cow position: chr19:51287639-51287423 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 155
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 30, 137

Conread position: 184-637
Cow position: chr19:10194412-10194876 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 120

Conread position: 188-689
Cow position: chr19:47099656-47100151 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 111

Conread position: 189-490
Cow position: chr19:42256668-42256358 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 216
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 196, 110

Conread position: 194-394
Cow position: chr19:24437236-24437031 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 157
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 62, 32

Conread position: 195-675
Cow position: chr19:23604632-23604152 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 312
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 50, 138

Conread position: 204-457
Cow position: chr19:16109418-16109673 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 189
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 190, 97

Conread position: 209-455
Cow position: chr19:354374-354128 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 175
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 187, 14

Conread position: 211-680
Cow position: chr19:4840644-4840173 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 45

Conread position: 212-728
Cow position: chr19:743901-743371 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 352
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 105, 19

Conread position: 213-688
Cow position: chr19:776315-776801 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 90

Conread position: 217-656
Cow position: chr19:29629031-29628590 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 298
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 181, 10

Conread position: 224-585
Cow position: chr19:43948318-43947960 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 233
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 168, 24

Conread position: 264-678
Cow position: chr19:42465841-42466273 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 68

Conread position: 269-607
Cow position: chr19:33649514-33649159 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 239
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 118, 45

Conread position: 270-689
Cow position: chr19:33527703-33528136 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 299
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 134, 33

Conread position: 270-689
Cow position: chr19:55377751-55378184 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 33

Conread position: 272-687
Cow position: chr19:28449673-28450112 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 299
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 42, 66

Conread position: 283-693
Cow position: chr19:5901896-5902321 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 293
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 111, 20

Conread position: 307-716
Cow position: chr19:37843042-37842632 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 277
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 89, 22

Conread position: 308-651
Cow position: chr19:6173637-6173281 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 241
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 70, 22

Conread position: 316-657
Cow position: chr19:1354382-1354023 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 240
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 82, 31

Conread position: 316-689
Cow position: chr19:48533629-48534017 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 271
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 78, 16

Conread position: 328-689
Cow position: chr19:10613139-10613517 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 264
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 66, 252

Conread position: 333-677
Cow position: chr19:5176781-5176426 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 244
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 39, 22

Conread position: 337-672
Cow position: chr19:24230422-24230774 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 253
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 57, 208

Conread position: 347-693
Cow position: chr19:29393272-29393636 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 260
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 47, 242

Conread position: 361-693
Cow position: chr19:40247721-40248071 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 242
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 33, 219

Conread position: 374-678
Cow position: chr19:39344890-39344588 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 221
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 119, 20

Conread position: 374-693
Cow position: chr19:36708417-36708091 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 236
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 22, 10

Conread position: 375-698
Cow position: chr19:15154958-15154623 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 235
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 18, 125

Conread position: 383-689
Cow position: chr19:30037937-30037618 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 230
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 15, 146

Conread position: 386-704
Cow position: chr19:19405981-19406317 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 232
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 23, 188

Conread position: 395-648
Cow position: chr19:7293256-7292990 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 182
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 15, 132

Conread position: 427-689
Cow position: chr19:30516009-30515738 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 193
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 49, 98

Conread position: 436-681
Cow position: chr19:5384444-5384699 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 175
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 41, 134

Conread position: 493-678
Cow position: chr19:26487352-26487533 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 132
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 117, 143

Show alignments to all cow chromosomes.