Cow genome map

Conread name: Utr1-UTR010050E01

Conread position: 1-477
Cow position: chr20:10867243-10866767 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 120

Conread position: 1-565
Cow position: chr20:20185295-20185868 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 51

Conread position: 1-567
Cow position: chr20:10495532-10496117 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 70

Conread position: 1-649
Cow position: chr20:23801433-23802105 (view UCSC Genome Browser custom track)
Alignm length: 677
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 336

Conread position: 1-678
Cow position: chr20:27876024-27876724 (view UCSC Genome Browser custom track)
Alignm length: 706
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 280

Conread position: 1-678
Cow position: chr20:28293860-28294555 (view UCSC Genome Browser custom track)
Alignm length: 708
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 230

Conread position: 1-689
Cow position: chr20:10922377-10921671 (view UCSC Genome Browser custom track)
Alignm length: 718
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 170

Conread position: 1-689
Cow position: chr20:23467122-23466398 (view UCSC Genome Browser custom track)
Alignm length: 733
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 92

Conread position: 1-689
Cow position: chr20:25846079-25845371 (view UCSC Genome Browser custom track)
Alignm length: 720
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 186

Conread position: 1-689
Cow position: chr20:27345421-27344732 (view UCSC Genome Browser custom track)
Alignm length: 714
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 60

Conread position: 1-689
Cow position: chr20:28444806-28444095 (view UCSC Genome Browser custom track)
Alignm length: 719
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 210

Conread position: 1-689
Cow position: chr20:37956276-37955602 (view UCSC Genome Browser custom track)
Alignm length: 707
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 76

Conread position: 1-709
Cow position: chr20:10493750-10494474 (view UCSC Genome Browser custom track)
Alignm length: 739
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 53

Conread position: 3-477
Cow position: chr20:18355774-18356262 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 323

Conread position: 3-585
Cow position: chr20:2653686-2654279 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 37

Conread position: 3-639
Cow position: chr20:18969270-18969913 (view UCSC Genome Browser custom track)
Alignm length: 656
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 250

Conread position: 3-678
Cow position: chr20:35160036-35159342 (view UCSC Genome Browser custom track)
Alignm length: 704
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 322

Conread position: 3-687
Cow position: chr20:8971348-8970643 (view UCSC Genome Browser custom track)
Alignm length: 714
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 306

Conread position: 3-689
Cow position: chr20:3809226-3808521 (view UCSC Genome Browser custom track)
Alignm length: 713
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 323

Conread position: 3-689
Cow position: chr20:6136445-6135739 (view UCSC Genome Browser custom track)
Alignm length: 718
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 14

Conread position: 3-689
Cow position: chr20:16105975-16106700 (view UCSC Genome Browser custom track)
Alignm length: 732
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 320

Conread position: 3-689
Cow position: chr20:21719109-21719809 (view UCSC Genome Browser custom track)
Alignm length: 720
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 314

Conread position: 3-689
Cow position: chr20:24568726-24568017 (view UCSC Genome Browser custom track)
Alignm length: 718
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 323

Conread position: 3-689
Cow position: chr20:30385703-30384993 (view UCSC Genome Browser custom track)
Alignm length: 718
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 309

Conread position: 3-689
Cow position: chr20:39233774-39234483 (view UCSC Genome Browser custom track)
Alignm length: 719
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 241

Conread position: 3-693
Cow position: chr20:16559998-16559275 (view UCSC Genome Browser custom track)
Alignm length: 731
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 309

Conread position: 3-693
Cow position: chr20:35108644-35107930 (view UCSC Genome Browser custom track)
Alignm length: 723
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 309

Conread position: 3-693
Cow position: chr20:38956681-38957395 (view UCSC Genome Browser custom track)
Alignm length: 723
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 323

Conread position: 3-696
Cow position: chr20:20440408-20439710 (view UCSC Genome Browser custom track)
Alignm length: 717
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 323

Conread position: 3-696
Cow position: chr20:30430815-30431530 (view UCSC Genome Browser custom track)
Alignm length: 722
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 322

Conread position: 6-467
Cow position: chr20:5270619-5270149 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 108

Conread position: 8-669
Cow position: chr20:34459759-34459078 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 19

Conread position: 8-689
Cow position: chr20:42085083-42085785 (view UCSC Genome Browser custom track)
Alignm length: 713
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 17

Conread position: 9-646
Cow position: chr20:23899938-23900570 (view UCSC Genome Browser custom track)
Alignm length: 658
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 30

Conread position: 9-677
Cow position: chr20:924944-924275 (view UCSC Genome Browser custom track)
Alignm length: 694
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 64

Conread position: 9-689
Cow position: chr20:24541975-24542678 (view UCSC Genome Browser custom track)
Alignm length: 711
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 317

Conread position: 12-605
Cow position: chr20:5225999-5225397 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 47

Conread position: 17-423
Cow position: chr20:3307406-3307810 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 44

Conread position: 17-478
Cow position: chr20:22696487-22696023 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 170

Conread position: 17-630
Cow position: chr20:4772256-4772885 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 97

Conread position: 17-656
Cow position: chr20:13788690-13789331 (view UCSC Genome Browser custom track)
Alignm length: 666
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 234, 7

Conread position: 17-689
Cow position: chr20:2180194-2179538 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 146

Conread position: 17-689
Cow position: chr20:14721815-14721126 (view UCSC Genome Browser custom track)
Alignm length: 711
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 18

Conread position: 18-689
Cow position: chr20:14926084-14925390 (view UCSC Genome Browser custom track)
Alignm length: 703
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 308

Conread position: 18-693
Cow position: chr20:13507000-13506304 (view UCSC Genome Browser custom track)
Alignm length: 706
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 294

Conread position: 28-678
Cow position: chr20:28561312-28560642 (view UCSC Genome Browser custom track)
Alignm length: 676
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 294

Conread position: 30-663
Cow position: chr20:14867808-14867159 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 206

Conread position: 45-689
Cow position: chr20:22208196-22208873 (view UCSC Genome Browser custom track)
Alignm length: 685
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 292

Conread position: 54-450
Cow position: chr20:13576116-13575716 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 6

Conread position: 67-398
Cow position: chr20:13062462-13062783 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 237
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 79, 48

Conread position: 94-633
Cow position: chr20:32085814-32085267 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 354
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 34, 17

Conread position: 96-675
Cow position: chr20:37169587-37168988 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 90

Conread position: 114-715
Cow position: chr20:1534880-1534249 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 106

Conread position: 119-689
Cow position: chr20:22061510-22060925 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 199

Conread position: 124-552
Cow position: chr20:38747696-38747270 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 293
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 41, 123

Conread position: 125-639
Cow position: chr20:19669782-19669259 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 77

Conread position: 135-568
Cow position: chr20:22186447-22186000 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 306
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 30, 62

Conread position: 147-673
Cow position: chr20:741705-742245 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 361
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 18, 60

Conread position: 148-689
Cow position: chr20:16515055-16515575 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 134

Conread position: 149-478
Cow position: chr20:31566193-31565864 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 229
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 16, 8

Conread position: 150-390
Cow position: chr20:42867466-42867700 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 175
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 14, 100

Conread position: 157-452
Cow position: chr20:8294607-8294898 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 210
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 82, 35

Conread position: 166-678
Cow position: chr20:34967706-34968225 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 126

Conread position: 166-693
Cow position: chr20:17658514-17657975 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 10

Conread position: 169-689
Cow position: chr20:16944240-16944750 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 357
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 227, 13

Conread position: 178-678
Cow position: chr20:9338753-9339267 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 134

Conread position: 188-693
Cow position: chr20:2017062-2016555 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 76

Conread position: 193-689
Cow position: chr20:33598222-33597712 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 110

Conread position: 194-671
Cow position: chr20:42055387-42054903 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 325
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 38, 21

Conread position: 194-689
Cow position: chr20:31785629-31785121 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 64

Conread position: 207-394
Cow position: chr20:16159914-16159730 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 131
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 107, 0

Conread position: 219-657
Cow position: chr20:16189974-16189519 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 85

Conread position: 226-689
Cow position: chr20:19306610-19306133 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 77

Conread position: 229-674
Cow position: chr20:14930033-14930482 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 39

Conread position: 237-689
Cow position: chr20:24400090-24399613 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 318
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 67, 360

Conread position: 251-693
Cow position: chr20:7569164-7568707 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 308
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 143, 52

Conread position: 251-693
Cow position: chr20:7593652-7593194 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 306
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 143, 52

Conread position: 252-707
Cow position: chr20:21677251-21677712 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 311
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 144, 47

Conread position: 254-693
Cow position: chr20:753241-753698 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 63

Conread position: 266-478
Cow position: chr20:2681663-2681877 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 153
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 14, 19

Conread position: 269-494
Cow position: chr20:13661701-13661485 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 161
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 107, 48

Conread position: 271-689
Cow position: chr20:5086517-5086085 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 32

Conread position: 285-689
Cow position: chr20:30688709-30689128 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 286
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 109, 32

Conread position: 308-673
Cow position: chr20:31220165-31220536 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 254
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 9, 16

Conread position: 318-657
Cow position: chr20:23393146-23392790 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 248
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 76, 14

Conread position: 323-675
Cow position: chr20:33296077-33295709 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 257
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 60, 45

Conread position: 338-693
Cow position: chr20:18489831-18490206 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 251
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 58, 363

Conread position: 347-677
Cow position: chr20:5352147-5351820 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 246
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 57, 86

Conread position: 351-541
Cow position: chr20:15745916-15746110 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 136
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 45, 147

Conread position: 362-633
Cow position: chr20:40007747-40007457 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 200
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 32, 171

Conread position: 367-689
Cow position: chr20:30578776-30579115 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 242
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 27, 213

Conread position: 374-678
Cow position: chr20:25987689-25987995 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 221
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 22, 58

Conread position: 375-669
Cow position: chr20:21836921-21837233 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 216
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 19, 159

Conread position: 386-689
Cow position: chr20:15800022-15799708 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 220
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 24, 188

Conread position: 394-689
Cow position: chr20:31504277-31504582 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 217
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 7, 188

Conread position: 402-704
Cow position: chr20:34231900-34231590 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 222
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 74, 179

Conread position: 404-681
Cow position: chr20:9996490-9996780 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 193
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 71, 155

Conread position: 406-666
Cow position: chr20:6259333-6259061 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 182
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 66, 0

Conread position: 406-689
Cow position: chr20:30146395-30146687 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 210
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 71, 119

Conread position: 427-709
Cow position: chr20:38654874-38654586 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 202
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 45, 143

Conread position: 474-693
Cow position: chr20:8350061-8349843 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 154
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 20, 104

Show alignments to all cow chromosomes.