Cow genome map

Conread name: Utr1-UTR010050E01

Conread position: 1-478
Cow position: chr23:1800114-1800597 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 168

Conread position: 1-489
Cow position: chr23:15179542-15180042 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 103

Conread position: 1-560
Cow position: chr23:36028906-36028322 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 218

Conread position: 1-621
Cow position: chr23:15504488-15505108 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 80

Conread position: 1-688
Cow position: chr23:15350700-15351385 (view UCSC Genome Browser custom track)
Alignm length: 716
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 26

Conread position: 1-689
Cow position: chr23:4516014-4516723 (view UCSC Genome Browser custom track)
Alignm length: 717
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 190

Conread position: 1-689
Cow position: chr23:4891167-4891878 (view UCSC Genome Browser custom track)
Alignm length: 719
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 33

Conread position: 1-689
Cow position: chr23:14960476-14959769 (view UCSC Genome Browser custom track)
Alignm length: 719
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 120

Conread position: 1-689
Cow position: chr23:15216361-15215652 (view UCSC Genome Browser custom track)
Alignm length: 717
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 325

Conread position: 1-689
Cow position: chr23:22144827-22144127 (view UCSC Genome Browser custom track)
Alignm length: 716
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 135

Conread position: 1-689
Cow position: chr23:37200043-37199331 (view UCSC Genome Browser custom track)
Alignm length: 719
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 119

Conread position: 3-449
Cow position: chr23:7219955-7219510 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 60

Conread position: 3-457
Cow position: chr23:17242622-17243071 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 306
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 46, 93

Conread position: 3-559
Cow position: chr23:943454-944036 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 323

Conread position: 3-633
Cow position: chr23:19316961-19317616 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 309

Conread position: 3-651
Cow position: chr23:4080618-4081291 (view UCSC Genome Browser custom track)
Alignm length: 680
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 309

Conread position: 3-660
Cow position: chr23:1249054-1248372 (view UCSC Genome Browser custom track)
Alignm length: 688
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 309

Conread position: 3-681
Cow position: chr23:2317075-2317740 (view UCSC Genome Browser custom track)
Alignm length: 702
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 102

Conread position: 3-689
Cow position: chr23:609208-609911 (view UCSC Genome Browser custom track)
Alignm length: 714
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 45

Conread position: 3-689
Cow position: chr23:3285237-3285941 (view UCSC Genome Browser custom track)
Alignm length: 717
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 14

Conread position: 3-689
Cow position: chr23:3417852-3417146 (view UCSC Genome Browser custom track)
Alignm length: 718
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 22

Conread position: 3-689
Cow position: chr23:14264824-14265529 (view UCSC Genome Browser custom track)
Alignm length: 715
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 214

Conread position: 3-689
Cow position: chr23:21009131-21008422 (view UCSC Genome Browser custom track)
Alignm length: 718
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 309

Conread position: 3-689
Cow position: chr23:21773436-21772728 (view UCSC Genome Browser custom track)
Alignm length: 717
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 326

Conread position: 3-689
Cow position: chr23:24119034-24119737 (view UCSC Genome Browser custom track)
Alignm length: 714
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 58

Conread position: 3-696
Cow position: chr23:2321466-2320755 (view UCSC Genome Browser custom track)
Alignm length: 720
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 321

Conread position: 3-696
Cow position: chr23:14971471-14970762 (view UCSC Genome Browser custom track)
Alignm length: 721
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 321

Conread position: 3-704
Cow position: chr23:16496792-16496065 (view UCSC Genome Browser custom track)
Alignm length: 738
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 133

Conread position: 4-605
Cow position: chr23:644239-643637 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 13

Conread position: 8-494
Cow position: chr23:4559078-4559562 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 320
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 42, 142

Conread position: 9-688
Cow position: chr23:3708884-3709586 (view UCSC Genome Browser custom track)
Alignm length: 711
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 203

Conread position: 14-699
Cow position: chr23:10422370-10421686 (view UCSC Genome Browser custom track)
Alignm length: 705
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 53

Conread position: 18-449
Cow position: chr23:16702244-16702682 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 288
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 114, 27

Conread position: 26-408
Cow position: chr23:1011333-1010940 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 322

Conread position: 41-605
Cow position: chr23:25562963-25563540 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 174

Conread position: 47-460
Cow position: chr23:10979983-10980400 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 264
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 35, 85

Conread position: 59-693
Cow position: chr23:4266082-4265429 (view UCSC Genome Browser custom track)
Alignm length: 662
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 263

Conread position: 69-391
Cow position: chr23:37228954-37228632 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 131

Conread position: 76-501
Cow position: chr23:35314843-35314403 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 23

Conread position: 77-494
Cow position: chr23:8099824-8100224 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 292
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 317, 28

Conread position: 79-396
Cow position: chr23:27755430-27755745 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 208
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 43, 107

Conread position: 83-559
Cow position: chr23:31612535-31613036 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 332
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 32, 53

Conread position: 119-689
Cow position: chr23:2720053-2720639 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 199

Conread position: 124-424
Cow position: chr23:1114693-1114993 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 218
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 41, 79

Conread position: 127-678
Cow position: chr23:1338864-1338315 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 39

Conread position: 137-661
Cow position: chr23:40888060-40888597 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 50

Conread position: 139-476
Cow position: chr23:31647452-31647118 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 229
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 26, 15

Conread position: 142-579
Cow position: chr23:22883718-22883281 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 283
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 26, 55

Conread position: 148-689
Cow position: chr23:28084467-28083911 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 170

Conread position: 148-689
Cow position: chr23:41143067-41143623 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 170

Conread position: 148-696
Cow position: chr23:5396954-5396391 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 170

Conread position: 150-689
Cow position: chr23:11713039-11712485 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 168

Conread position: 165-690
Cow position: chr23:16367577-16368117 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 18

Conread position: 189-554
Cow position: chr23:3844369-3843987 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 261
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 205, 114

Conread position: 190-689
Cow position: chr23:4533034-4532515 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 127

Conread position: 210-478
Cow position: chr23:1552632-1552364 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 190
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 36, 108

Conread position: 212-491
Cow position: chr23:2039744-2040025 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 205
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 68, 19

Conread position: 215-634
Cow position: chr23:25593720-25594153 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 105

Conread position: 225-477
Cow position: chr23:35274586-35274843 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 191
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 77, 207

Conread position: 225-693
Cow position: chr23:36473073-36473547 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 327
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 20, 54

Conread position: 229-693
Cow position: chr23:24516554-24517022 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 89

Conread position: 234-675
Cow position: chr23:33575151-33574700 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 305
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 112, 83

Conread position: 240-678
Cow position: chr23:30634875-30634421 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 77

Conread position: 251-689
Cow position: chr23:32008646-32008194 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 66

Conread position: 252-689
Cow position: chr23:10680102-10679651 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 51

Conread position: 253-689
Cow position: chr23:31703627-31704077 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 64

Conread position: 254-689
Cow position: chr23:2437446-2437002 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 295
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 144, 66

Conread position: 254-689
Cow position: chr23:3301589-3302037 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 63

Conread position: 255-689
Cow position: chr23:11172940-11172493 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 81

Conread position: 257-476
Cow position: chr23:14266799-14267014 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 163
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 139, 29

Conread position: 258-689
Cow position: chr23:31605165-31605610 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 59

Conread position: 259-703
Cow position: chr23:16018270-16017799 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 320
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 101, 32

Conread position: 262-454
Cow position: chr23:6666457-6666653 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 144
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 134, 41

Conread position: 268-693
Cow position: chr23:11386289-11385859 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 297
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 119, 55

Conread position: 276-650
Cow position: chr23:670647-671036 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 268
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 118, 11

Conread position: 284-693
Cow position: chr23:14216459-14216037 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 293
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 103, 33

Conread position: 286-689
Cow position: chr23:28987115-28987525 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 288
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 68, 31

Conread position: 291-693
Cow position: chr23:30166570-30166161 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 42

Conread position: 307-666
Cow position: chr23:38301949-38301582 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 256
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 82, 116

Conread position: 327-693
Cow position: chr23:36676330-36675954 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 133

Conread position: 333-678
Cow position: chr23:14790293-14790657 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 253
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 61, 247

Conread position: 336-602
Cow position: chr23:16488503-16488762 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 177
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 55, 145

Conread position: 337-678
Cow position: chr23:2367921-2368282 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 239
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 61, 254

Conread position: 363-728
Cow position: chr23:7288676-7288328 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 244
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 42, 31

Conread position: 367-703
Cow position: chr23:30959895-30960238 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 235
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 11, 20

Conread position: 368-678
Cow position: chr23:7250244-7249925 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 227
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 24, 227

Conread position: 413-678
Cow position: chr23:771594-771318 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 200
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 63, 112

Conread position: 421-689
Cow position: chr23:24823110-24822843 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 184
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 11, 85

Show alignments to all cow chromosomes.