Cow genome map
| Conread name: | Utr1-UTR010050E01 |
| Conread position: | 1-477 |
| Cow position: | chr25:38398718-38399196 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 118 |
| Conread position: | 1-509 |
| Cow position: | chr25:34344439-34343924 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 318 |
| Conread position: | 1-638 |
| Cow position: | chr25:22150339-22151000 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 65 |
| Conread position: | 1-663 |
| Cow position: | chr25:35562245-35561552 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 53 |
| Conread position: | 1-689 |
| Cow position: | chr25:11664935-11665648 (view UCSC Genome Browser custom track) |
| Alignm length: | 723 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 137 |
| Conread position: | 1-689 |
| Cow position: | chr25:13959331-13960039 (view UCSC Genome Browser custom track) |
| Alignm length: | 722 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 202 |
| Conread position: | 1-689 |
| Cow position: | chr25:28862132-28862844 (view UCSC Genome Browser custom track) |
| Alignm length: | 719 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 325 |
| Conread position: | 3-396 |
| Cow position: | chr25:10135966-10136358 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 104 |
| Conread position: | 3-401 |
| Cow position: | chr25:26355425-26355826 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 65 |
| Conread position: | 3-401 |
| Cow position: | chr25:26930135-26930537 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 273 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 50, 20 |
| Conread position: | 3-627 |
| Cow position: | chr25:16923865-16923229 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 13 |
| Conread position: | 3-688 |
| Cow position: | chr25:37647699-37648403 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 21 |
| Conread position: | 3-689 |
| Cow position: | chr25:11042885-11043593 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 311 |
| Conread position: | 3-689 |
| Cow position: | chr25:19338050-19337353 (view UCSC Genome Browser custom track) |
| Alignm length: | 712 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 51 |
| Conread position: | 3-689 |
| Cow position: | chr25:20773067-20772354 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 489 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 323 |
| Conread position: | 3-689 |
| Cow position: | chr25:32578394-32577690 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 319 |
| Conread position: | 3-716 |
| Cow position: | chr25:34494882-34494151 (view UCSC Genome Browser custom track) |
| Alignm length: | 745 |
| Alignm identity: | 525 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 184 |
| Conread position: | 7-460 |
| Cow position: | chr25:21276436-21276906 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 311 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 31, 246 |
| Conread position: | 7-481 |
| Cow position: | chr25:26794989-26795431 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 320 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 159, 40 |
| Conread position: | 8-477 |
| Cow position: | chr25:33261732-33262196 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 46 |
| Conread position: | 9-686 |
| Cow position: | chr25:17586748-17586051 (view UCSC Genome Browser custom track) |
| Alignm length: | 710 |
| Alignm identity: | 489 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 202 |
| Conread position: | 9-689 |
| Cow position: | chr25:35552961-35553642 (view UCSC Genome Browser custom track) |
| Alignm length: | 700 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 287 |
| Conread position: | 17-402 |
| Cow position: | chr25:35086015-35085619 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 49 |
| Conread position: | 17-422 |
| Cow position: | chr25:13792934-13792520 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 54 |
| Conread position: | 17-616 |
| Cow position: | chr25:34671115-34670516 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 190 |
| Conread position: | 18-391 |
| Cow position: | chr25:34667452-34667077 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 63 |
| Conread position: | 18-678 |
| Cow position: | chr25:18191109-18190409 (view UCSC Genome Browser custom track) |
| Alignm length: | 707 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 320 |
| Conread position: | 34-364 |
| Cow position: | chr25:40142247-40141927 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 107 |
| Conread position: | 45-494 |
| Cow position: | chr25:19017078-19016631 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 55 |
| Conread position: | 46-689 |
| Cow position: | chr25:29313992-29313347 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 61 |
| Conread position: | 53-678 |
| Cow position: | chr25:30020605-30020001 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 89 |
| Conread position: | 54-490 |
| Cow position: | chr25:31591473-31591037 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 306 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 79, 13 |
| Conread position: | 69-689 |
| Cow position: | chr25:12939874-12939235 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 253 |
| Conread position: | 73-613 |
| Cow position: | chr25:21232126-21232673 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 359 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 49, 20 |
| Conread position: | 73-613 |
| Cow position: | chr25:21241494-21242041 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 354 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 49, 20 |
| Conread position: | 75-678 |
| Cow position: | chr25:33027908-33027298 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 115 |
| Conread position: | 82-504 |
| Cow position: | chr25:9076717-9077140 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 155 |
| Conread position: | 94-566 |
| Cow position: | chr25:27813848-27814341 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 73 |
| Conread position: | 106-689 |
| Cow position: | chr25:27019867-27019265 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 216 |
| Conread position: | 120-689 |
| Cow position: | chr25:24007296-24007880 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 184 |
| Conread position: | 123-663 |
| Cow position: | chr25:29526470-29525913 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 181 |
| Conread position: | 142-674 |
| Cow position: | chr25:17903326-17903854 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 36 |
| Conread position: | 142-689 |
| Cow position: | chr25:18264636-18265169 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 366 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 43, 111 |
| Conread position: | 151-627 |
| Cow position: | chr25:33990826-33990336 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 167 |
| Conread position: | 158-449 |
| Cow position: | chr25:9984669-9984955 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 236, 76 |
| Conread position: | 160-689 |
| Cow position: | chr25:18489481-18490038 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 361 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 5, 85 |
| Conread position: | 165-721 |
| Cow position: | chr25:21542759-21543322 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 370 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 99, 65 |
| Conread position: | 166-663 |
| Cow position: | chr25:20633202-20633715 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 151 |
| Conread position: | 170-384 |
| Cow position: | chr25:18644343-18644139 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 187-666 |
| Cow position: | chr25:1078250-1078718 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 16 |
| Conread position: | 193-689 |
| Cow position: | chr25:30113022-30112544 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 39 |
| Conread position: | 198-402 |
| Cow position: | chr25:10652072-10651870 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 11, 120 |
| Conread position: | 198-709 |
| Cow position: | chr25:26753850-26753324 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 106 |
| Conread position: | 206-675 |
| Cow position: | chr25:22431232-22431712 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 43 |
| Conread position: | 214-677 |
| Cow position: | chr25:14011325-14011805 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 329 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 182, 30 |
| Conread position: | 224-632 |
| Cow position: | chr25:24799030-24799437 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 20 |
| Conread position: | 225-696 |
| Cow position: | chr25:2594272-2594752 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 321 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 50, 93 |
| Conread position: | 238-392 |
| Cow position: | chr25:13965556-13965708 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 240-689 |
| Cow position: | chr25:19410048-19410527 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 327 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 73, 24 |
| Conread position: | 246-689 |
| Cow position: | chr25:22197871-22197414 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 57 |
| Conread position: | 251-670 |
| Cow position: | chr25:19327155-19327584 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 52 |
| Conread position: | 254-401 |
| Cow position: | chr25:34615450-34615594 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 257-603 |
| Cow position: | chr25:38803447-38803783 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 79, 43 |
| Conread position: | 257-651 |
| Cow position: | chr25:17451144-17450755 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 261 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 139, 44 |
| Conread position: | 260-478 |
| Cow position: | chr25:14773704-14773922 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 127, 39 |
| Conread position: | 262-677 |
| Cow position: | chr25:16871769-16871345 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 291 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 39, 134 |
| Conread position: | 304-663 |
| Cow position: | chr25:15004655-15005026 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 28 |
| Conread position: | 307-678 |
| Cow position: | chr25:17657200-17657584 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 95, 25 |
| Conread position: | 307-693 |
| Cow position: | chr25:12865367-12865756 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 15 |
| Conread position: | 313-678 |
| Cow position: | chr25:23740661-23740282 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 269 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 81, 17 |
| Conread position: | 315-485 |
| Cow position: | chr25:22519741-22519915 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 79, 164 |
| Conread position: | 333-681 |
| Cow position: | chr25:11152481-11152126 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 248 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 61, 100 |
| Conread position: | 333-689 |
| Cow position: | chr25:7223832-7223460 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 260 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 61, 200 |
| Conread position: | 337-689 |
| Cow position: | chr25:2223202-2222846 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 244 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 17, 172 |
| Conread position: | 348-681 |
| Cow position: | chr25:13942114-13941772 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 50, 156 |
| Conread position: | 355-693 |
| Cow position: | chr25:10634380-10634029 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 43, 13 |
| Conread position: | 358-675 |
| Cow position: | chr25:23462007-23462337 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 35, 228 |
| Conread position: | 362-678 |
| Cow position: | chr25:18286632-18286311 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 34, 99 |
| Conread position: | 386-689 |
| Cow position: | chr25:35571478-35571791 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 24, 141 |
| Conread position: | 396-689 |
| Cow position: | chr25:34257438-34257134 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 14, 131 |
| Conread position: | 400-689 |
| Cow position: | chr25:24670893-24670597 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 72, 142 |
| Conread position: | 421-678 |
| Cow position: | chr25:14619308-14619051 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 58, 97 |
Show alignments to all cow chromosomes.