Cow genome map

Conread name: Utr1-UTR010050E01

Conread position: 1-401
Cow position: chr27:26552949-26552562 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 278
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 49, 27

Conread position: 1-448
Cow position: chr27:8200279-8200740 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 325

Conread position: 1-477
Cow position: chr27:22722840-22723316 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 24

Conread position: 1-678
Cow position: chr27:4981852-4982546 (view UCSC Genome Browser custom track)
Alignm length: 704
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 52

Conread position: 1-678
Cow position: chr27:15273603-15272894 (view UCSC Genome Browser custom track)
Alignm length: 716
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 327

Conread position: 1-689
Cow position: chr27:3233049-3232351 (view UCSC Genome Browser custom track)
Alignm length: 711
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 103

Conread position: 1-689
Cow position: chr27:20809887-20810604 (view UCSC Genome Browser custom track)
Alignm length: 725
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 102

Conread position: 1-693
Cow position: chr27:23318443-23317754 (view UCSC Genome Browser custom track)
Alignm length: 708
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 56

Conread position: 1-703
Cow position: chr27:1905084-1904393 (view UCSC Genome Browser custom track)
Alignm length: 724
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 15

Conread position: 1-704
Cow position: chr27:9990739-9989992 (view UCSC Genome Browser custom track)
Alignm length: 754
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 180

Conread position: 2-689
Cow position: chr27:1535659-1536353 (view UCSC Genome Browser custom track)
Alignm length: 715
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 80

Conread position: 2-693
Cow position: chr27:8960557-8959841 (view UCSC Genome Browser custom track)
Alignm length: 724
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 325

Conread position: 3-477
Cow position: chr27:18696815-18697303 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 309

Conread position: 3-678
Cow position: chr27:17567591-17568275 (view UCSC Genome Browser custom track)
Alignm length: 702
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 58

Conread position: 3-689
Cow position: chr27:1520155-1520863 (view UCSC Genome Browser custom track)
Alignm length: 718
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 232

Conread position: 3-689
Cow position: chr27:5984552-5983847 (view UCSC Genome Browser custom track)
Alignm length: 714
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 58

Conread position: 3-689
Cow position: chr27:13352771-13353489 (view UCSC Genome Browser custom track)
Alignm length: 724
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 323

Conread position: 3-689
Cow position: chr27:16031923-16031214 (view UCSC Genome Browser custom track)
Alignm length: 718
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 323

Conread position: 3-714
Cow position: chr27:24114627-24115338 (view UCSC Genome Browser custom track)
Alignm length: 741
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 11

Conread position: 3-723
Cow position: chr27:12147169-12146424 (view UCSC Genome Browser custom track)
Alignm length: 752
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 323

Conread position: 17-477
Cow position: chr27:26599416-26599875 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 310

Conread position: 17-681
Cow position: chr27:31267723-31268393 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 102

Conread position: 18-488
Cow position: chr27:28923493-28923979 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 317

Conread position: 18-640
Cow position: chr27:30571310-30571965 (view UCSC Genome Browser custom track)
Alignm length: 662
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 320

Conread position: 18-687
Cow position: chr27:14296715-14297388 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 96

Conread position: 25-689
Cow position: chr27:21450938-21451627 (view UCSC Genome Browser custom track)
Alignm length: 698
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 234

Conread position: 42-678
Cow position: chr27:27500762-27501383 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 18

Conread position: 54-678
Cow position: chr27:30584627-30583992 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 6

Conread position: 54-693
Cow position: chr27:29036840-29036192 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 6

Conread position: 59-592
Cow position: chr27:7586727-7587265 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 350
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 69, 35

Conread position: 60-478
Cow position: chr27:6017187-6017603 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 267
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 118, 20

Conread position: 68-693
Cow position: chr27:22260830-22260183 (view UCSC Genome Browser custom track)
Alignm length: 658
Alignm identity: 407
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 59, 32

Conread position: 78-476
Cow position: chr27:28686144-28685739 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 65

Conread position: 90-392
Cow position: chr27:20761251-20761552 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 212
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 36, 158

Conread position: 91-392
Cow position: chr27:2380153-2380456 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 229

Conread position: 95-649
Cow position: chr27:29375552-29374997 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 93

Conread position: 99-459
Cow position: chr27:2896910-2897276 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 60

Conread position: 100-391
Cow position: chr27:1498628-1498913 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 202
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 15, 72

Conread position: 118-704
Cow position: chr27:15405249-15405839 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 116

Conread position: 119-658
Cow position: chr27:30035410-30035974 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 75

Conread position: 124-465
Cow position: chr27:11350867-11350520 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 236
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 41, 200

Conread position: 124-678
Cow position: chr27:25801602-25801031 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 198

Conread position: 135-402
Cow position: chr27:26452811-26452547 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 183
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 30, 183

Conread position: 135-433
Cow position: chr27:22821816-22821521 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 201
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 261, 59

Conread position: 135-678
Cow position: chr27:15543629-15544189 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 183

Conread position: 147-689
Cow position: chr27:10578554-10579130 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 89

Conread position: 166-669
Cow position: chr27:865254-865788 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 110

Conread position: 169-429
Cow position: chr27:2348492-2348749 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 183
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 145, 0

Conread position: 169-650
Cow position: chr27:22648257-22647760 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 134

Conread position: 178-477
Cow position: chr27:773433-773737 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 209
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 216, 139

Conread position: 178-689
Cow position: chr27:8426517-8427040 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 142

Conread position: 188-451
Cow position: chr27:15874415-15874152 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 188
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 197, 129

Conread position: 188-651
Cow position: chr27:24064569-24065041 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 42

Conread position: 192-567
Cow position: chr27:16582791-16582402 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 273
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 137, 45

Conread position: 216-716
Cow position: chr27:13919342-13919835 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 327
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 175, 80

Conread position: 223-539
Cow position: chr27:12172271-12172589 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 216
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 9, 91

Conread position: 224-392
Cow position: chr27:12176535-12176698 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 124
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 20, 81

Conread position: 246-693
Cow position: chr27:1082437-1081974 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 71

Conread position: 252-485
Cow position: chr27:29006089-29006333 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 170
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 104, 48

Conread position: 262-451
Cow position: chr27:28894737-28894930 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 140
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 126, 13

Conread position: 269-704
Cow position: chr27:27044932-27045388 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 300
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 120, 45

Conread position: 272-677
Cow position: chr27:616018-615608 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 262
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 24, 41

Conread position: 272-711
Cow position: chr27:25873395-25873838 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 42

Conread position: 304-488
Cow position: chr27:12164205-12164017 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 142
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 14, 73

Conread position: 307-689
Cow position: chr27:3759659-3760051 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 272
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 87, 25

Conread position: 319-681
Cow position: chr27:17422388-17422761 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 260
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 72, 143

Conread position: 321-666
Cow position: chr27:25971800-25971441 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 244
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 73, 12

Conread position: 333-620
Cow position: chr27:29447266-29446960 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 204
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 61, 247

Conread position: 368-678
Cow position: chr27:31249094-31249416 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 222
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 30, 162

Conread position: 375-559
Cow position: chr27:21684467-21684275 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 140
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 12, 142

Conread position: 382-675
Cow position: chr27:31547685-31547366 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 217
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 10, 201

Conread position: 386-648
Cow position: chr27:7911852-7912124 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 187
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 24, 186

Conread position: 386-689
Cow position: chr27:27556677-27556989 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 221
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 20, 138

Conread position: 427-689
Cow position: chr27:13308556-13308827 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 196
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 50, 98

Conread position: 437-666
Cow position: chr27:1845954-1845715 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 167
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 37, 135

Show alignments to all cow chromosomes.