Cow genome map
| Conread name: | mE4-MI-P-E4-ahe-h-07-1-UM.s1 |
| Conread position: | 4-391 |
| Cow position: | chr1:43003920-43004302 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 15, 43 |
| Conread position: | 17-434 |
| Cow position: | chr1:44522018-44522437 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 47, 12 |
| Conread position: | 33-409 |
| Cow position: | chr1:77573526-77573148 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 239 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 197, 155 |
| Conread position: | 38-510 |
| Cow position: | chr1:37556413-37555945 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 312 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 23, 107 |
| Conread position: | 39-390 |
| Cow position: | chr1:83105807-83105454 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 20, 170 |
| Conread position: | 39-406 |
| Cow position: | chr1:51643254-51642894 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 21, 103 |
| Conread position: | 39-485 |
| Cow position: | chr1:15458486-15458042 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 286 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 25, 164 |
| Conread position: | 39-488 |
| Cow position: | chr1:4337738-4337292 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 307 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 20, 50 |
| Conread position: | 39-501 |
| Cow position: | chr1:77620267-77619808 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 305 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 23, 96 |
| Conread position: | 39-520 |
| Cow position: | chr1:40618369-40617910 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 322 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 94, 20 |
| Conread position: | 39-538 |
| Cow position: | chr1:79099891-79100361 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 350 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 24, 160 |
| Conread position: | 39-546 |
| Cow position: | chr1:81292071-81291558 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 337 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 22, 163 |
| Conread position: | 39-557 |
| Cow position: | chr1:87472724-87473252 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 139 |
| Conread position: | 39-558 |
| Cow position: | chr1:22011981-22012497 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 343 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 20, 93 |
| Conread position: | 39-558 |
| Cow position: | chr1:68601648-68602164 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 343 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 23, 72 |
| Conread position: | 39-559 |
| Cow position: | chr1:73760216-73760727 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 6 |
| Conread position: | 40-350 |
| Cow position: | chr1:6519819-6519516 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 204 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 19, 162 |
| Conread position: | 44-542 |
| Cow position: | chr1:20046194-20045684 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 50 |
| Conread position: | 45-290 |
| Cow position: | chr1:71346760-71347004 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 16, 155 |
| Conread position: | 51-364 |
| Cow position: | chr1:26572474-26572786 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 8, 158 |
| Conread position: | 51-365 |
| Cow position: | chr1:73914305-73914618 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 123, 57 |
| Conread position: | 51-514 |
| Cow position: | chr1:16849476-16849019 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 149 |
| Conread position: | 58-384 |
| Cow position: | chr1:68239680-68239999 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 213 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 17, 143 |
| Conread position: | 58-544 |
| Cow position: | chr1:71599364-71599831 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 322 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 102, 89 |
| Conread position: | 59-354 |
| Cow position: | chr1:31969107-31969398 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 171, 21 |
| Conread position: | 59-364 |
| Cow position: | chr1:37573464-37573158 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 16, 149 |
| Conread position: | 59-453 |
| Cow position: | chr1:85715560-85715954 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 171, 39 |
| Conread position: | 59-488 |
| Cow position: | chr1:33498453-33498885 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 288 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 168, 129 |
| Conread position: | 59-537 |
| Cow position: | chr1:35731849-35732328 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 142 |
| Conread position: | 59-540 |
| Cow position: | chr1:56772188-56772676 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 34 |
| Conread position: | 59-552 |
| Cow position: | chr1:43221114-43221588 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 328 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 141, 27 |
| Conread position: | 64-507 |
| Cow position: | chr1:56080776-56081234 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 300 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 31, 139 |
| Conread position: | 65-310 |
| Cow position: | chr1:31271856-31272097 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 165, 16 |
| Conread position: | 71-503 |
| Cow position: | chr1:41277213-41277644 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 135 |
| Conread position: | 71-535 |
| Cow position: | chr1:36529118-36528655 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 9 |
| Conread position: | 78-457 |
| Cow position: | chr1:44824949-44824572 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 122, 198 |
| Conread position: | 78-547 |
| Cow position: | chr1:22516231-22515764 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 303 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 59, 47 |
| Conread position: | 83-371 |
| Cow position: | chr1:78300149-78300434 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 150, 118 |
| Conread position: | 83-557 |
| Cow position: | chr1:31158639-31159114 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 305 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 183, 170 |
| Conread position: | 89-537 |
| Cow position: | chr1:92663211-92663649 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 285 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 62, 74 |
| Conread position: | 101-373 |
| Cow position: | chr1:19437429-19437699 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 100, 107 |
| Conread position: | 110-482 |
| Cow position: | chr1:50910646-50911026 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 261 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 120, 89 |
| Conread position: | 116-507 |
| Cow position: | chr1:102560404-102560018 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 255 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 113, 83 |
| Conread position: | 135-535 |
| Cow position: | chr1:28811351-28811755 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 281 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 66, 73 |
Show alignments to all cow chromosomes.