Cow genome map

Conread name: rcbe26_b12.y1

Conread position: 1-252
Cow position: chr1:31934221-31934480 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 185
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 58, 189

Conread position: 1-253
Cow position: chr1:61724315-61724053 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 199
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 58, 14

Conread position: 1-254
Cow position: chr1:42053617-42053363 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 199
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 59, 212

Conread position: 1-255
Cow position: chr1:15311576-15311840 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 196
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 55, 191

Conread position: 1-255
Cow position: chr1:22448876-22448616 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 186

Conread position: 1-255
Cow position: chr1:76019972-76019725 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 72

Conread position: 1-259
Cow position: chr1:34159543-34159810 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 206
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 61, 24

Conread position: 1-259
Cow position: chr1:63435095-63434831 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 197
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 138, 81

Conread position: 1-261
Cow position: chr1:56225186-56225444 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 26

Conread position: 4-175
Cow position: chr1:70828617-70828794 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 136
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 24, 86

Conread position: 4-255
Cow position: chr1:22728759-22729022 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 198
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 55, 31

Conread position: 4-264
Cow position: chr1:48444467-48444213 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 201
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 60, 21

Conread position: 5-247
Cow position: chr1:72012095-72011846 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 191
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 28, 70

Conread position: 5-259
Cow position: chr1:8334-8591 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 195
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 54, 185

Conread position: 5-265
Cow position: chr1:21954509-21954251 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 193
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 26, 6

Conread position: 6-260
Cow position: chr1:5409898-5409638 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 185
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 49, 19

Conread position: 7-247
Cow position: chr1:53595039-53595283 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 183
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 52, 203

Conread position: 7-247
Cow position: chr1:67821504-67821248 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 185
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 29, 201

Conread position: 7-255
Cow position: chr1:732211-731971 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 186
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 52, 139

Conread position: 7-255
Cow position: chr1:22467642-22467903 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 201
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 24, 178

Conread position: 7-255
Cow position: chr1:41696775-41697029 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 196
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 132, 36

Conread position: 7-255
Cow position: chr1:85361569-85361831 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 198
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 52, 224

Conread position: 7-255
Cow position: chr1:85596660-85596912 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 51

Conread position: 7-258
Cow position: chr1:71045465-71045728 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 195
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 33, 68

Conread position: 7-258
Cow position: chr1:81355989-81355735 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 196
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 55, 189

Conread position: 7-259
Cow position: chr1:63391058-63390796 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 196
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 58, 0

Conread position: 7-260
Cow position: chr1:90868724-90868465 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 202
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 36, 115

Conread position: 7-265
Cow position: chr1:10719776-10719500 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 191
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 26, 207

Conread position: 7-265
Cow position: chr1:53308678-53308414 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 204
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 52, 64

Conread position: 7-265
Cow position: chr1:96964033-96964300 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 204
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 52, 168

Conread position: 7-266
Cow position: chr1:21577521-21577789 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 194
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 63, 24

Conread position: 7-266
Cow position: chr1:44164794-44165064 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 192
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 59, 25

Conread position: 7-266
Cow position: chr1:84282775-84283059 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 209
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 52, 196

Conread position: 8-255
Cow position: chr1:1877741-1878000 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 196

Conread position: 8-260
Cow position: chr1:4027576-4027843 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 199
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 48, 189

Conread position: 8-265
Cow position: chr1:53374149-53374412 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 171

Conread position: 9-251
Cow position: chr1:82378512-82378755 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 176
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 43, 17

Conread position: 9-258
Cow position: chr1:101547326-101547060 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 186
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 50, 69

Conread position: 10-255
Cow position: chr1:55357563-55357314 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 189
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 133, 28

Conread position: 11-260
Cow position: chr1:3323572-3323841 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 200
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 14, 25

Conread position: 11-266
Cow position: chr1:91039441-91039193 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 177
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 54, 88

Conread position: 12-251
Cow position: chr1:100421565-100421799 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 179
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 47, 11

Conread position: 13-254
Cow position: chr1:98708163-98708410 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 186
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 31, 16

Conread position: 17-252
Cow position: chr1:92437267-92437028 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 180
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 42, 193

Conread position: 18-221
Cow position: chr1:32631195-32631404 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 167
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 115, 41

Conread position: 20-235
Cow position: chr1:31348186-31347965 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 171
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 13, 137

Conread position: 21-255
Cow position: chr1:84240628-84240863 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 185
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 38, 50

Conread position: 21-266
Cow position: chr1:28176728-28176990 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 186
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 41, 246

Conread position: 22-246
Cow position: chr1:43380300-43380065 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 179
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 37, 171

Conread position: 23-289
Cow position: chr1:21131356-21131091 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 204
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 34, 109

Conread position: 24-259
Cow position: chr1:81913421-81913180 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 186
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 35, 174

Conread position: 26-251
Cow position: chr1:56711883-56711652 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 182
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 114, 6

Conread position: 30-289
Cow position: chr1:52488221-52487954 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 193
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 115, 58

Conread position: 31-253
Cow position: chr1:50679547-50679314 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 172
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 27, 12

Conread position: 31-258
Cow position: chr1:52506806-52506581 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 178
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 28, 50

Conread position: 32-254
Cow position: chr1:95327414-95327181 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 173
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 29, 163

Conread position: 32-258
Cow position: chr1:78794996-78794768 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 179
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 27, 160

Conread position: 32-259
Cow position: chr1:79278695-79278472 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 171
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 116, 21

Conread position: 32-265
Cow position: chr1:45535441-45535685 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 190
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 27, 46

Conread position: 33-253
Cow position: chr1:3137672-3137898 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 169
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 16, 56

Conread position: 33-253
Cow position: chr1:63905734-63905503 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 173
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 25, 83

Conread position: 33-254
Cow position: chr1:81868987-81868758 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 164
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 26, 157

Conread position: 33-259
Cow position: chr1:6165991-6166215 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 170
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 26, 99

Conread position: 33-259
Cow position: chr1:6941206-6941438 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 178
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 25, 38

Conread position: 33-259
Cow position: chr1:6958619-6958851 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 178
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 25, 38

Conread position: 33-260
Cow position: chr1:74084449-74084219 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 71

Conread position: 34-255
Cow position: chr1:76470400-76470626 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 175
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 24, 99

Conread position: 35-252
Cow position: chr1:16767343-16767115 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 162
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 24, 0

Conread position: 35-255
Cow position: chr1:13413769-13413999 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 169
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 24, 36

Conread position: 37-266
Cow position: chr1:68827161-68826923 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 183
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 24, 159

Conread position: 39-266
Cow position: chr1:37707223-37706992 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 175
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 20, 160

Conread position: 40-255
Cow position: chr1:36931906-36932128 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 173
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 19, 150

Conread position: 40-255
Cow position: chr1:50931222-50931006 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 167
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 19, 80

Conread position: 42-274
Cow position: chr1:47233726-47233491 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 175
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 16, 146

Conread position: 43-253
Cow position: chr1:24655710-24655930 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 173
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 16, 36

Conread position: 45-273
Cow position: chr1:89485343-89485565 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 167
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 43, 23

Conread position: 47-270
Cow position: chr1:4293818-4294041 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 171
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 17, 99

Conread position: 50-255
Cow position: chr1:94403976-94404183 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 149
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 89, 126

Conread position: 53-255
Cow position: chr1:20287877-20288089 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 155
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 82, 131

Conread position: 57-183
Cow position: chr1:77891580-77891707 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 104
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 12, 93

Conread position: 57-255
Cow position: chr1:7442752-7442953 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 148
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 89, 18

Conread position: 57-258
Cow position: chr1:24597419-24597631 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 150
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 89, 95

Conread position: 57-270
Cow position: chr1:40531342-40531127 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 162
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 103, 28

Conread position: 57-285
Cow position: chr1:49839273-49839507 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 180
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 12, 129

Conread position: 60-255
Cow position: chr1:68951401-68951598 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 152
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 77, 122

Conread position: 70-259
Cow position: chr1:7971210-7971390 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 149
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 90, 63

Conread position: 71-258
Cow position: chr1:15333661-15333858 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 149
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 70, 19

Conread position: 71-266
Cow position: chr1:45673492-45673691 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 151
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 72, 35

Conread position: 96-265
Cow position: chr1:82443651-82443476 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 135
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 43, 92

Conread position: 98-247
Cow position: chr1:83594000-83593840 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 31, 96

Conread position: 104-266
Cow position: chr1:43703228-43703389 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 126
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 54, 16

Conread position: 109-255
Cow position: chr1:9533994-9534143 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 39, 76

Conread position: 109-266
Cow position: chr1:51684629-51684786 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 124
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 49, 16

Conread position: 109-266
Cow position: chr1:65318400-65318556 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 49, 129

Conread position: 120-258
Cow position: chr1:87095396-87095256 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 6, 63

Conread position: 135-264
Cow position: chr1:65909377-65909507 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 106
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 23, 47

Show alignments to all cow chromosomes.