Cow genome map

Conread name: rcbe26_b12.y1

Conread position: 1-243
Cow position: chr11:46451301-46451542 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 191
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 58, 70

Conread position: 1-247
Cow position: chr11:84891060-84890811 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 196
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 138, 31

Conread position: 1-253
Cow position: chr11:55744156-55744417 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 199
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 58, 216

Conread position: 1-255
Cow position: chr11:59872609-59872878 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 202
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 58, 73

Conread position: 1-255
Cow position: chr11:68570989-68570719 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 205
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 58, 115

Conread position: 1-255
Cow position: chr11:73512737-73512490 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 195
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 58, 111

Conread position: 1-258
Cow position: chr11:65495645-65495376 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 0

Conread position: 1-258
Cow position: chr11:74929463-74929733 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 205
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 61, 193

Conread position: 1-259
Cow position: chr11:25336754-25337025 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 196
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 45, 85

Conread position: 1-259
Cow position: chr11:34112946-34113214 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 199
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 39, 128

Conread position: 1-259
Cow position: chr11:49105736-49106008 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 202
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 35, 75

Conread position: 1-265
Cow position: chr11:67246489-67246749 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 184
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 81, 53

Conread position: 1-265
Cow position: chr11:68910170-68909895 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 20

Conread position: 1-265
Cow position: chr11:70383012-70382735 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 206
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 58, 222

Conread position: 1-266
Cow position: chr11:36848625-36848887 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 200
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 136, 58

Conread position: 1-269
Cow position: chr11:77751083-77750809 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 202
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 63, 191

Conread position: 3-265
Cow position: chr11:80530055-80530325 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 196
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 55, 0

Conread position: 4-266
Cow position: chr11:27462700-27462434 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 199
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 21, 29

Conread position: 5-221
Cow position: chr11:84774804-84775019 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 116

Conread position: 5-255
Cow position: chr11:46398809-46399072 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 186
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 22, 75

Conread position: 7-206
Cow position: chr11:72870603-72870825 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 170
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 51, 17

Conread position: 7-207
Cow position: chr11:16795459-16795253 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 160
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 52, 18

Conread position: 7-214
Cow position: chr11:2343973-2344179 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 144
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 151, 26

Conread position: 7-214
Cow position: chr11:36986651-36986873 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 179
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 52, 15

Conread position: 7-243
Cow position: chr11:33413922-33414172 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 162

Conread position: 7-251
Cow position: chr11:63847540-63847791 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 187
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 57, 182

Conread position: 7-253
Cow position: chr11:15503790-15504052 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 196
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 52, 38

Conread position: 7-254
Cow position: chr11:4384314-4384566 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 81

Conread position: 7-254
Cow position: chr11:40467435-40467172 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 7-255
Cow position: chr11:3393521-3393265 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 186
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 52, 43

Conread position: 7-255
Cow position: chr11:42358813-42359059 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 187
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 34, 54

Conread position: 7-255
Cow position: chr11:57047274-57047023 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 173
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 52, 88

Conread position: 7-257
Cow position: chr11:18698562-18698826 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 201
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 27, 15

Conread position: 7-259
Cow position: chr11:53130504-53130762 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 18

Conread position: 7-260
Cow position: chr11:10076463-10076719 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 196
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 52, 117

Conread position: 7-264
Cow position: chr11:43913911-43914168 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 68

Conread position: 7-265
Cow position: chr11:34962751-34963021 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 203
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 52, 64

Conread position: 7-265
Cow position: chr11:67746966-67747241 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 199
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 52, 184

Conread position: 7-265
Cow position: chr11:81614940-81614684 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 190
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 57, 25

Conread position: 7-266
Cow position: chr11:31900737-31901004 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 100

Conread position: 7-289
Cow position: chr11:35275984-35276280 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 223
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 33, 194

Conread position: 8-257
Cow position: chr11:10095032-10095293 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 200
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 51, 188

Conread position: 8-259
Cow position: chr11:59463946-59463687 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 194
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 27, 53

Conread position: 10-265
Cow position: chr11:55014313-55014050 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 179
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 49, 15

Conread position: 13-258
Cow position: chr11:53719640-53719893 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 186
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 21, 10

Conread position: 15-258
Cow position: chr11:85764650-85764888 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 184
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 40, 16

Conread position: 28-162
Cow position: chr11:63434850-63434987 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 112
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 36, 0

Conread position: 29-221
Cow position: chr11:36981278-36981480 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 155
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 30, 0

Conread position: 31-174
Cow position: chr11:85678303-85678451 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 28, 0

Conread position: 32-254
Cow position: chr11:11125376-11125608 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 174
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 26, 163

Conread position: 32-255
Cow position: chr11:10302475-10302243 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 167
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 30, 85

Conread position: 32-259
Cow position: chr11:8148178-8147948 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 172
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 21, 66

Conread position: 32-259
Cow position: chr11:48932869-48932634 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 180
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 27, 39

Conread position: 32-259
Cow position: chr11:57111594-57111356 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 173
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 27, 39

Conread position: 32-259
Cow position: chr11:83066209-83066445 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 180
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 28, 157

Conread position: 32-278
Cow position: chr11:25165159-25165412 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 181
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 35, 149

Conread position: 33-234
Cow position: chr11:79019801-79019597 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 149
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 23, 88

Conread position: 33-246
Cow position: chr11:35148883-35149101 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 161
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 26, 46

Conread position: 33-258
Cow position: chr11:30110686-30110912 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 159
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 171, 35

Conread position: 33-258
Cow position: chr11:38193866-38194104 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 172
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 25, 172

Conread position: 33-259
Cow position: chr11:42519459-42519690 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 165
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 106, 164

Conread position: 35-255
Cow position: chr11:6234162-6233933 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 169
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 24, 156

Conread position: 35-255
Cow position: chr11:81300896-81300664 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 176
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 23, 160

Conread position: 35-266
Cow position: chr11:48474425-48474661 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 184
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 24, 73

Conread position: 36-255
Cow position: chr11:55761597-55761817 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 170
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 23, 35

Conread position: 37-183
Cow position: chr11:39431170-39431021 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 22, 0

Conread position: 37-255
Cow position: chr11:65827013-65826796 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 165
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 22, 83

Conread position: 37-265
Cow position: chr11:45632046-45631803 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 184
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 22, 157

Conread position: 39-266
Cow position: chr11:42003233-42002987 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 180
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 98, 230

Conread position: 40-265
Cow position: chr11:75748157-75748390 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 178
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 19, 142

Conread position: 41-247
Cow position: chr11:71309806-71309589 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 157
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 18, 161

Conread position: 43-258
Cow position: chr11:62155355-62155577 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 174
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 78, 28

Conread position: 43-266
Cow position: chr11:377926-377686 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 180
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 16, 157

Conread position: 44-259
Cow position: chr11:79728948-79728719 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 181
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 15, 154

Conread position: 46-260
Cow position: chr11:12555690-12555460 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 165
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 89, 217

Conread position: 49-252
Cow position: chr11:36799562-36799358 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 156
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 97, 19

Conread position: 50-258
Cow position: chr11:34032461-34032252 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 168
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 87, 21

Conread position: 59-255
Cow position: chr11:37100616-37100409 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 151
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 82, 200

Conread position: 60-258
Cow position: chr11:19247450-19247250 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 157
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 79, 106

Conread position: 63-244
Cow position: chr11:3726033-3726225 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 147
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 78, 0

Conread position: 72-259
Cow position: chr11:62808892-62808698 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 149
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 67, 116

Conread position: 73-255
Cow position: chr11:57725071-57724876 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 146
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 68, 0

Conread position: 81-265
Cow position: chr11:38874636-38874446 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 143
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 59, 23

Conread position: 87-258
Cow position: chr11:33348413-33348233 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 136
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 52, 104

Conread position: 94-265
Cow position: chr11:2811945-2811774 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 126
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 37, 89

Conread position: 99-259
Cow position: chr11:52983474-52983627 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 124
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 79, 47

Conread position: 112-259
Cow position: chr11:29786803-29786654 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 111
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 36, 73

Conread position: 121-259
Cow position: chr11:53511894-53512034 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 106
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 36, 63

Conread position: 135-259
Cow position: chr11:15525780-15525909 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 107
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 23, 80

Show alignments to all cow chromosomes.