Cow genome map
| Conread name: | rcbe26_b12.y1 |
| Conread position: | 1-221 |
| Cow position: | chr5:53055826-53055607 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 57, 100 |
| Conread position: | 1-255 |
| Cow position: | chr5:28224182-28224444 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 201 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 60, 86 |
| Conread position: | 1-255 |
| Cow position: | chr5:54405167-54404901 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 58, 37 |
| Conread position: | 4-248 |
| Cow position: | chr5:4952486-4952743 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 55, 208 |
| Conread position: | 4-248 |
| Cow position: | chr5:65601193-65601440 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 55, 21 |
| Conread position: | 4-255 |
| Cow position: | chr5:50821518-50821772 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 55, 117 |
| Conread position: | 4-266 |
| Cow position: | chr5:42747891-42748158 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 55, 26 |
| Conread position: | 4-273 |
| Cow position: | chr5:16184822-16185094 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 21 |
| Conread position: | 5-255 |
| Cow position: | chr5:45705778-45706035 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 203 |
| Conread position: | 6-257 |
| Cow position: | chr5:44583386-44583138 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 65 |
| Conread position: | 7-193 |
| Cow position: | chr5:53825257-53825440 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 7-251 |
| Cow position: | chr5:52645347-52645093 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 28, 184 |
| Conread position: | 7-251 |
| Cow position: | chr5:53855437-53855684 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 75 |
| Conread position: | 7-255 |
| Cow position: | chr5:42063936-42064193 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 52, 123 |
| Conread position: | 7-258 |
| Cow position: | chr5:43923416-43923165 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 52, 201 |
| Conread position: | 7-258 |
| Cow position: | chr5:55176625-55176883 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 201 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 52, 36 |
| Conread position: | 7-258 |
| Cow position: | chr5:72564491-72564754 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 200 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 43, 189 |
| Conread position: | 7-259 |
| Cow position: | chr5:360212-359948 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 36, 64 |
| Conread position: | 7-259 |
| Cow position: | chr5:65887281-65887013 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 193 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 52, 259 |
| Conread position: | 7-259 |
| Cow position: | chr5:65933195-65932934 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 97 |
| Conread position: | 7-260 |
| Cow position: | chr5:18573903-18574168 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 194 |
| Conread position: | 7-260 |
| Cow position: | chr5:42845867-42845602 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 198 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 52, 71 |
| Conread position: | 7-265 |
| Cow position: | chr5:30816448-30816718 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 203 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 52, 187 |
| Conread position: | 7-265 |
| Cow position: | chr5:45226096-45225824 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 105 |
| Conread position: | 8-251 |
| Cow position: | chr5:4218615-4218856 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 51, 23 |
| Conread position: | 9-250 |
| Cow position: | chr5:56467439-56467685 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 191 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 94, 50 |
| Conread position: | 9-259 |
| Cow position: | chr5:52165448-52165184 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 17, 63 |
| Conread position: | 17-268 |
| Cow position: | chr5:50729238-50729496 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 199 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 42, 219 |
| Conread position: | 18-253 |
| Cow position: | chr5:43474591-43474835 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 41, 160 |
| Conread position: | 31-259 |
| Cow position: | chr5:65776628-65776390 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 27, 7 |
| Conread position: | 32-193 |
| Cow position: | chr5:9498147-9498312 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 32-259 |
| Cow position: | chr5:51999977-52000216 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 32, 163 |
| Conread position: | 33-259 |
| Cow position: | chr5:72903465-72903237 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 182 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 104, 35 |
| Conread position: | 34-259 |
| Cow position: | chr5:37646792-37646552 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 25, 148 |
| Conread position: | 34-259 |
| Cow position: | chr5:49685521-49685276 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 35-255 |
| Cow position: | chr5:75437136-75436897 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 39-259 |
| Cow position: | chr5:45036785-45037015 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 20, 153 |
| Conread position: | 39-270 |
| Cow position: | chr5:17063329-17063086 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 19, 155 |
| Conread position: | 40-266 |
| Cow position: | chr5:24996458-24996222 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 19, 44 |
| Conread position: | 41-265 |
| Cow position: | chr5:41164855-41165086 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 183 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 18, 128 |
| Conread position: | 43-235 |
| Cow position: | chr5:16938239-16938037 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 16, 78 |
| Conread position: | 45-260 |
| Cow position: | chr5:32697042-32696828 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 14, 78 |
| Conread position: | 47-260 |
| Cow position: | chr5:35235933-35235714 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 94, 142 |
| Conread position: | 57-255 |
| Cow position: | chr5:62027160-62026957 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 89, 11 |
| Conread position: | 57-265 |
| Cow position: | chr5:64137037-64137253 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 86, 209 |
| Conread position: | 59-259 |
| Cow position: | chr5:75230471-75230672 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 70, 128 |
| Conread position: | 59-262 |
| Cow position: | chr5:56518421-56518214 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 80, 12 |
| Conread position: | 61-257 |
| Cow position: | chr5:21964083-21964280 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 97, 17 |
| Conread position: | 61-258 |
| Cow position: | chr5:18898773-18898969 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 85, 124 |
| Conread position: | 63-255 |
| Cow position: | chr5:64758972-64758781 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 83, 54 |
| Conread position: | 63-259 |
| Cow position: | chr5:458273-458485 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 64-255 |
| Cow position: | chr5:44049495-44049690 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 73, 190 |
| Conread position: | 68-289 |
| Cow position: | chr5:35449050-35449282 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 75, 121 |
| Conread position: | 75-259 |
| Cow position: | chr5:62995649-62995839 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 64, 24 |
| Conread position: | 87-259 |
| Cow position: | chr5:17644840-17644661 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 49, 102 |
| Conread position: | 112-247 |
| Cow position: | chr5:41486896-41486757 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 25, 75 |
Show alignments to all cow chromosomes.