Cow genome map

Conread name: rcbe26_b12.y1

Conread position: 1-169
Cow position: chr9:3532581-3532754 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 135
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 58, 120

Conread position: 1-258
Cow position: chr9:28726398-28726659 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 89

Conread position: 1-259
Cow position: chr9:1950250-1949980 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 206
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 44, 63

Conread position: 1-260
Cow position: chr9:1520401-1520678 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 80

Conread position: 1-260
Cow position: chr9:34000284-34000562 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 206
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 42, 26

Conread position: 1-265
Cow position: chr9:29184809-29185078 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 205
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 63, 26

Conread position: 1-266
Cow position: chr9:62442609-62442344 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 197
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 69, 88

Conread position: 1-274
Cow position: chr9:34287117-34286847 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 194
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 37, 15

Conread position: 1-278
Cow position: chr9:7410110-7409820 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 274

Conread position: 4-238
Cow position: chr9:49279776-49279556 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 179
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 154, 55

Conread position: 4-253
Cow position: chr9:7363360-7363091 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 196
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 55, 0

Conread position: 4-259
Cow position: chr9:54528840-54528572 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 204
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 55, 168

Conread position: 4-260
Cow position: chr9:26057127-26057382 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 192
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 154, 55

Conread position: 7-244
Cow position: chr9:13205248-13205490 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 189
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 26, 65

Conread position: 7-247
Cow position: chr9:1984198-1984453 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 192
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 21, 70

Conread position: 7-253
Cow position: chr9:29841211-29840951 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 194
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 34, 0

Conread position: 7-253
Cow position: chr9:41680055-41679812 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 193
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 38, 18

Conread position: 7-254
Cow position: chr9:5393372-5393114 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 201
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 51, 64

Conread position: 7-254
Cow position: chr9:48106795-48107050 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 190
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 36, 187

Conread position: 7-255
Cow position: chr9:5594822-5594566 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 188
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 52, 184

Conread position: 7-255
Cow position: chr9:43871294-43871043 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 113

Conread position: 7-258
Cow position: chr9:36445943-36445690 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 200
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 52, 64

Conread position: 7-258
Cow position: chr9:42498151-42497887 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 7-259
Cow position: chr9:5246167-5245922 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 197
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 52, 18

Conread position: 7-259
Cow position: chr9:59172057-59172322 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 198
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 52, 15

Conread position: 7-260
Cow position: chr9:15215353-15215626 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 201
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 18, 0

Conread position: 7-265
Cow position: chr9:18162830-18163101 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 203
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 32, 82

Conread position: 8-251
Cow position: chr9:14974606-14974862 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 194
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 51, 14

Conread position: 8-255
Cow position: chr9:21888490-21888231 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 8-260
Cow position: chr9:8998676-8998416 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 196
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 51, 183

Conread position: 9-253
Cow position: chr9:22114312-22114569 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 196
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 13, 184

Conread position: 9-255
Cow position: chr9:5501169-5500922 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 166

Conread position: 9-273
Cow position: chr9:52407490-52407213 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 10-253
Cow position: chr9:50080727-50080980 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 194
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 49, 181

Conread position: 13-255
Cow position: chr9:7634584-7634338 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 180
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 46, 128

Conread position: 13-255
Cow position: chr9:9723567-9723818 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 184
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 46, 58

Conread position: 16-255
Cow position: chr9:20960970-20961212 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 181
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 30, 169

Conread position: 23-259
Cow position: chr9:10011108-10010862 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 186
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 22, 0

Conread position: 26-254
Cow position: chr9:45170866-45171101 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 173
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 33, 152

Conread position: 29-259
Cow position: chr9:54716326-54716546 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 164
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 30, 0

Conread position: 32-258
Cow position: chr9:35305820-35306056 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 178
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 10, 137

Conread position: 32-259
Cow position: chr9:55084000-55084237 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 182
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 27, 162

Conread position: 33-255
Cow position: chr9:58674037-58673804 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 174
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 26, 87

Conread position: 34-266
Cow position: chr9:55287600-55287838 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 184
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 63, 11

Conread position: 38-221
Cow position: chr9:34689321-34689503 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 141
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 21, 82

Conread position: 41-247
Cow position: chr9:11201867-11201665 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 151
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 15, 77

Conread position: 47-252
Cow position: chr9:41789556-41789352 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 158
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 91, 12

Conread position: 50-253
Cow position: chr9:9823243-9823439 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 151
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 17, 81

Conread position: 50-255
Cow position: chr9:8288894-8288682 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 158
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 21, 138

Conread position: 50-265
Cow position: chr9:5532228-5532002 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 168
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 91, 18

Conread position: 58-252
Cow position: chr9:33598249-33598048 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 159
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 85, 130

Conread position: 58-259
Cow position: chr9:9753128-9753332 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 163
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 100, 13

Conread position: 61-254
Cow position: chr9:23541153-23541342 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 154
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 99, 73

Conread position: 61-255
Cow position: chr9:55890076-55889875 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 148
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 8, 155

Conread position: 61-255
Cow position: chr9:64559622-64559820 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 153
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 87, 124

Conread position: 61-259
Cow position: chr9:6225187-6225393 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 162
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 79, 130

Conread position: 64-251
Cow position: chr9:38846087-38846275 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 136
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 82, 95

Conread position: 68-253
Cow position: chr9:38875316-38875509 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 147
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 71, 122

Conread position: 89-258
Cow position: chr9:40604187-40604006 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 137
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 52, 0

Show alignments to all cow chromosomes.