Cow genome map
| Conread name: | rcbe26_b12.y1 |
| Conread position: | 1-247 |
| Cow position: | chrX:27516261-27516512 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 31 |
| Conread position: | 1-250 |
| Cow position: | chrX:16762500-16762755 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 31 |
| Conread position: | 1-255 |
| Cow position: | chrX:28134077-28134337 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 201 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 58, 26 |
| Conread position: | 1-255 |
| Cow position: | chrX:34238449-34238706 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 193 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 58, 192 |
| Conread position: | 1-255 |
| Cow position: | chrX:35224030-35224287 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 58, 77 |
| Conread position: | 1-258 |
| Cow position: | chrX:35041950-35042219 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 58, 22 |
| Conread position: | 1-258 |
| Cow position: | chrX:35681063-35681335 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 130 |
| Conread position: | 1-259 |
| Cow position: | chrX:27446419-27446691 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 206 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 58, 24 |
| Conread position: | 1-259 |
| Cow position: | chrX:29289304-29289575 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 200 |
| Conread position: | 1-259 |
| Cow position: | chrX:31294812-31294568 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 61, 34 |
| Conread position: | 1-260 |
| Cow position: | chrX:5872044-5872315 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 210 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 58, 23 |
| Conread position: | 1-265 |
| Cow position: | chrX:35609714-35609990 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 192 |
| Conread position: | 2-258 |
| Cow position: | chrX:20751992-20752249 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 37, 23 |
| Conread position: | 3-190 |
| Cow position: | chrX:37102311-37102128 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 155, 68 |
| Conread position: | 3-255 |
| Cow position: | chrX:8925436-8925692 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 22 |
| Conread position: | 3-255 |
| Cow position: | chrX:27509289-27509034 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 200 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 56, 9 |
| Conread position: | 4-260 |
| Cow position: | chrX:34441716-34441455 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 21 |
| Conread position: | 4-266 |
| Cow position: | chrX:48195310-48195037 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 205 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 54, 258 |
| Conread position: | 6-244 |
| Cow position: | chrX:38967383-38967628 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 184 |
| Conread position: | 7-214 |
| Cow position: | chrX:11844504-11844294 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 58, 18 |
| Conread position: | 7-247 |
| Cow position: | chrX:28847142-28846898 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 191 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 52, 13 |
| Conread position: | 7-247 |
| Cow position: | chrX:33466351-33466593 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 52 |
| Conread position: | 7-248 |
| Cow position: | chrX:41790706-41790461 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 134, 52 |
| Conread position: | 7-248 |
| Cow position: | chrX:47967334-47967585 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 52, 30 |
| Conread position: | 7-254 |
| Cow position: | chrX:38094791-38094531 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 64 |
| Conread position: | 7-255 |
| Cow position: | chrX:12115775-12116037 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 52, 36 |
| Conread position: | 7-255 |
| Cow position: | chrX:19188670-19188929 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 186 |
| Conread position: | 7-258 |
| Cow position: | chrX:7351036-7351295 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 200 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 52, 18 |
| Conread position: | 7-258 |
| Cow position: | chrX:14599266-14599526 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 15, 51 |
| Conread position: | 7-258 |
| Cow position: | chrX:38439207-38439472 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 205 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 51, 188 |
| Conread position: | 7-259 |
| Cow position: | chrX:488224-488487 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 195 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 49, 64 |
| Conread position: | 7-259 |
| Cow position: | chrX:1616317-1616049 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 205 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 45, 192 |
| Conread position: | 7-259 |
| Cow position: | chrX:11614455-11614695 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 52, 100 |
| Conread position: | 7-259 |
| Cow position: | chrX:34502657-34502917 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 57, 18 |
| Conread position: | 7-259 |
| Cow position: | chrX:34565034-34565276 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 151, 12 |
| Conread position: | 7-259 |
| Cow position: | chrX:41743647-41743907 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 64 |
| Conread position: | 7-260 |
| Cow position: | chrX:47379733-47379472 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 52, 124 |
| Conread position: | 7-266 |
| Cow position: | chrX:33639699-33639975 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 203 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 7-266 |
| Cow position: | chrX:42994348-42994615 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 105 |
| Conread position: | 9-247 |
| Cow position: | chrX:9161324-9161568 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 53, 189 |
| Conread position: | 11-255 |
| Cow position: | chrX:46073075-46072829 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 58, 30 |
| Conread position: | 12-259 |
| Cow position: | chrX:37489470-37489718 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 189 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 46, 27 |
| Conread position: | 13-259 |
| Cow position: | chrX:14973992-14973745 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 90, 112 |
| Conread position: | 14-255 |
| Cow position: | chrX:20151591-20151841 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 19-250 |
| Cow position: | chrX:25816150-25815922 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 186 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 40, 172 |
| Conread position: | 19-255 |
| Cow position: | chrX:41673849-41674101 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 33, 7 |
| Conread position: | 21-265 |
| Cow position: | chrX:23497915-23497667 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 164 |
| Conread position: | 23-259 |
| Cow position: | chrX:20709822-20710068 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 36, 22 |
| Conread position: | 31-259 |
| Cow position: | chrX:35284375-35284615 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 28, 163 |
| Conread position: | 32-254 |
| Cow position: | chrX:40788962-40789199 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 13, 166 |
| Conread position: | 32-255 |
| Cow position: | chrX:47757170-47756937 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 27, 188 |
| Conread position: | 32-258 |
| Cow position: | chrX:17631043-17630812 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 30, 159 |
| Conread position: | 32-258 |
| Cow position: | chrX:39558591-39558356 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 185 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 13, 158 |
| Conread position: | 32-259 |
| Cow position: | chrX:1514645-1514415 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 181 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 24, 148 |
| Conread position: | 32-259 |
| Cow position: | chrX:24259819-24259588 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 114, 27 |
| Conread position: | 33-217 |
| Cow position: | chrX:34543547-34543741 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 26, 74 |
| Conread position: | 33-252 |
| Cow position: | chrX:26625917-26625688 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 26, 164 |
| Conread position: | 33-254 |
| Cow position: | chrX:27394254-27394032 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 179 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 26, 153 |
| Conread position: | 33-255 |
| Cow position: | chrX:16416268-16416499 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 26, 48 |
| Conread position: | 34-260 |
| Cow position: | chrX:45598843-45598606 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 24, 139 |
| Conread position: | 35-259 |
| Cow position: | chrX:27680165-27680390 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 181 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 29, 151 |
| Conread position: | 36-259 |
| Cow position: | chrX:17662834-17662598 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 23, 158 |
| Conread position: | 37-266 |
| Cow position: | chrX:15814861-15815086 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 22, 89 |
| Conread position: | 39-259 |
| Cow position: | chrX:2383255-2383484 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 20, 31 |
| Conread position: | 39-265 |
| Cow position: | chrX:29602064-29601829 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 23, 39 |
| Conread position: | 40-259 |
| Cow position: | chrX:36975716-36975944 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 19, 219 |
| Conread position: | 41-252 |
| Cow position: | chrX:30963104-30962885 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 18, 148 |
| Conread position: | 43-255 |
| Cow position: | chrX:16790067-16789861 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 19, 142 |
| Conread position: | 46-273 |
| Cow position: | chrX:11856202-11856437 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 13, 42 |
| Conread position: | 48-153 |
| Cow position: | chrX:1465962-1466070 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 88 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 49-273 |
| Cow position: | chrX:36283124-36283363 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 50-259 |
| Cow position: | chrX:1503119-1503331 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 95, 18 |
| Conread position: | 54-260 |
| Cow position: | chrX:33000686-33000899 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 16, 138 |
| Conread position: | 57-259 |
| Cow position: | chrX:11633465-11633675 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 82, 132 |
| Conread position: | 57-265 |
| Cow position: | chrX:29509657-29509438 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 63-252 |
| Cow position: | chrX:46315588-46315390 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 78, 146 |
| Conread position: | 65-259 |
| Cow position: | chrX:29120851-29121041 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 93, 61 |
| Conread position: | 69-266 |
| Cow position: | chrX:1499468-1499667 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 68, 105 |
| Conread position: | 71-254 |
| Cow position: | chrX:4091448-4091637 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 72, 185 |
| Conread position: | 73-258 |
| Cow position: | chrX:36961438-36961637 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 88-255 |
| Cow position: | chrX:32820847-32821021 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 55, 11 |
| Conread position: | 127-265 |
| Cow position: | chrX:38728600-38728739 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 31, 55 |
Show alignments to all cow chromosomes.