Cow genome map

Conread name: rcbl0_019776.y1

Conread position: 3-455
Cow position: chr12:19040060-19040511 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 153

Conread position: 3-473
Cow position: chr12:43103629-43103139 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 87

Conread position: 3-477
Cow position: chr12:5800589-5800097 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 144

Conread position: 3-580
Cow position: chr12:1408641-1408032 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 121

Conread position: 3-580
Cow position: chr12:1774104-1774708 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 40

Conread position: 3-584
Cow position: chr12:22687290-22686708 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 62

Conread position: 3-589
Cow position: chr12:3181217-3180613 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 143

Conread position: 3-589
Cow position: chr12:10931897-10931289 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 149

Conread position: 3-589
Cow position: chr12:15821530-15820936 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 148

Conread position: 3-589
Cow position: chr12:17663762-17663167 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 56

Conread position: 3-589
Cow position: chr12:19869023-19868418 (view UCSC Genome Browser custom track)
Alignm length: 613
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 78

Conread position: 3-589
Cow position: chr12:24558387-24557784 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 55

Conread position: 3-589
Cow position: chr12:32849375-32848770 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 65

Conread position: 4-578
Cow position: chr12:23475556-23474969 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 137

Conread position: 6-572
Cow position: chr12:21718373-21718955 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 90

Conread position: 6-589
Cow position: chr12:15231824-15231239 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 210

Conread position: 9-377
Cow position: chr12:21578984-21579364 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 264
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 43, 115

Conread position: 9-433
Cow position: chr12:37697673-37698107 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 120

Conread position: 9-577
Cow position: chr12:25839087-25838501 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 9-580
Cow position: chr12:14214864-14214275 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 9-581
Cow position: chr12:10359499-10358909 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 140

Conread position: 9-581
Cow position: chr12:30142214-30141632 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 154

Conread position: 9-587
Cow position: chr12:13042437-13043035 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 138

Conread position: 9-588
Cow position: chr12:3070662-3070063 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 104

Conread position: 9-589
Cow position: chr12:5227031-5226438 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 12

Conread position: 9-589
Cow position: chr12:14424160-14423554 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 9-589
Cow position: chr12:15719767-15720358 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 9-589
Cow position: chr12:21433145-21432545 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 9-589
Cow position: chr12:21665941-21665340 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 9-589
Cow position: chr12:25147817-25148414 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 78

Conread position: 9-589
Cow position: chr12:25265532-25266129 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 171

Conread position: 9-589
Cow position: chr12:28012427-28013027 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 6

Conread position: 9-589
Cow position: chr12:32010974-32011573 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 141

Conread position: 9-589
Cow position: chr12:32758497-32757901 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 325

Conread position: 9-589
Cow position: chr12:36446188-36445591 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 9-589
Cow position: chr12:37562804-37562211 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 256

Conread position: 9-589
Cow position: chr12:38894166-38893568 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 9-589
Cow position: chr12:46111314-46111913 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 11-561
Cow position: chr12:25365234-25365784 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 120

Conread position: 11-578
Cow position: chr12:31217983-31217402 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 175

Conread position: 11-584
Cow position: chr12:6478641-6479223 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 146

Conread position: 12-580
Cow position: chr12:759195-758635 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 14

Conread position: 12-580
Cow position: chr12:21905169-21904573 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 135

Conread position: 12-589
Cow position: chr12:34177355-34176759 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 135

Conread position: 13-485
Cow position: chr12:22286135-22286625 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 71

Conread position: 13-589
Cow position: chr12:35311127-35311707 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 140

Conread position: 14-589
Cow position: chr12:22201882-22202477 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 134

Conread position: 17-507
Cow position: chr12:21946778-21946279 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 275

Conread position: 20-577
Cow position: chr12:6186361-6186929 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 94

Conread position: 22-589
Cow position: chr12:22749002-22748419 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 62

Conread position: 27-536
Cow position: chr12:9909765-9910278 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 122

Conread position: 27-588
Cow position: chr12:43681789-43681210 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 78

Conread position: 27-589
Cow position: chr12:25312932-25313509 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 29

Conread position: 29-455
Cow position: chr12:5146349-5145905 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 70

Conread position: 29-584
Cow position: chr12:29447591-29447017 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 94

Conread position: 30-589
Cow position: chr12:24981490-24980925 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 118

Conread position: 30-589
Cow position: chr12:41972993-41973568 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 117

Conread position: 45-589
Cow position: chr12:33297388-33296837 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 81

Conread position: 50-466
Cow position: chr12:21702109-21702503 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 278
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 169, 94

Conread position: 53-589
Cow position: chr12:5713721-5713168 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 94

Conread position: 68-589
Cow position: chr12:22480860-22480329 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 78

Conread position: 70-588
Cow position: chr12:48416012-48416541 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 76

Conread position: 72-458
Cow position: chr12:21723855-21723453 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 276
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 46, 75

Conread position: 84-589
Cow position: chr12:7885151-7885683 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 353

Conread position: 108-460
Cow position: chr12:2511694-2512047 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 255
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 99, 36

Conread position: 109-362
Cow position: chr12:28704679-28704419 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 189
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 98, 37

Conread position: 141-589
Cow position: chr12:19198677-19198240 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 31

Conread position: 149-376
Cow position: chr12:27986973-27987221 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 179
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 58, 130

Conread position: 211-584
Cow position: chr12:19871824-19871422 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 211-589
Cow position: chr12:1093489-1093106 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 106

Conread position: 211-589
Cow position: chr12:7674490-7674106 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 112

Conread position: 211-589
Cow position: chr12:15939293-15939657 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 263
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 76, 68

Conread position: 211-589
Cow position: chr12:42604596-42604978 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 112

Conread position: 216-381
Cow position: chr12:24658137-24658293 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 86, 0

Conread position: 216-588
Cow position: chr12:26869669-26870051 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 276

Conread position: 217-589
Cow position: chr12:18586254-18585877 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 30

Conread position: 218-581
Cow position: chr12:6105788-6106135 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 248
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 90, 122

Conread position: 231-438
Cow position: chr12:6686504-6686296 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 158
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 71, 106

Conread position: 235-580
Cow position: chr12:28571936-28571598 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 75

Conread position: 247-589
Cow position: chr12:5107610-5107262 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 82

Conread position: 252-589
Cow position: chr12:35547588-35547924 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 77

Conread position: 274-569
Cow position: chr12:6954838-6954547 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 213
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 25, 55

Conread position: 276-589
Cow position: chr12:259253-258934 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 227
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 28, 47

Conread position: 301-586
Cow position: chr12:8136491-8136782 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 199
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 21, 54

Conread position: 311-587
Cow position: chr12:8774154-8773873 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 227

Conread position: 312-518
Cow position: chr12:36448643-36448857 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 145
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 42, 0

Conread position: 330-486
Cow position: chr12:9894453-9894614 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 122
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 118, 0

Conread position: 330-517
Cow position: chr12:45540864-45540671 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 151
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 39, 0

Conread position: 330-589
Cow position: chr12:31260938-31261205 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 200
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 12, 207

Conread position: 334-589
Cow position: chr12:19495912-19496170 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 148
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 8, 17

Conread position: 336-580
Cow position: chr12:1476198-1476447 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 180
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 33, 217

Conread position: 337-568
Cow position: chr12:3094159-3094397 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 0

Conread position: 349-580
Cow position: chr12:36213729-36213492 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 177
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 21, 187

Conread position: 356-589
Cow position: chr12:27929350-27929587 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 164
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 98, 25

Conread position: 386-580
Cow position: chr12:1108524-1108333 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 142
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 68, 17

Conread position: 387-580
Cow position: chr12:39283104-39283303 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 154
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 71, 0

Conread position: 395-572
Cow position: chr12:42795319-42795144 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 126
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 49, 0

Conread position: 410-572
Cow position: chr12:41595611-41595443 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 131
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 41, 91

Conread position: 411-589
Cow position: chr12:18936217-18936033 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 137
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 43, 124

Conread position: 447-580
Cow position: chr12:42232657-42232524 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 101
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 91, 83

Conread position: 447-589
Cow position: chr12:40306646-40306503 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 105
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 135, 0

Show alignments to all cow chromosomes.