Cow genome map

Conread name: rcbl0_019776.y1

Conread position: 3-376
Cow position: chr19:12613943-12614320 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 267
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 204, 46

Conread position: 3-431
Cow position: chr19:2821156-2820731 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 115

Conread position: 3-438
Cow position: chr19:32457227-32456781 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 145

Conread position: 3-441
Cow position: chr19:29071139-29071574 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 144

Conread position: 3-491
Cow position: chr19:14581189-14580690 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 35

Conread position: 3-501
Cow position: chr19:15766692-15766168 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 157

Conread position: 3-508
Cow position: chr19:42274310-42274828 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 154

Conread position: 3-580
Cow position: chr19:5733407-5732816 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 144

Conread position: 3-581
Cow position: chr19:27612596-27613183 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 199

Conread position: 3-584
Cow position: chr19:12652791-12652192 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 144

Conread position: 3-588
Cow position: chr19:6556528-6555933 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 152

Conread position: 3-588
Cow position: chr19:7491997-7491407 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 145

Conread position: 3-589
Cow position: chr19:930735-930130 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 153

Conread position: 3-589
Cow position: chr19:2260538-2261134 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 84

Conread position: 3-589
Cow position: chr19:2589100-2588500 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 153

Conread position: 3-589
Cow position: chr19:15719998-15720562 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 152

Conread position: 3-589
Cow position: chr19:25086110-25085519 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 153

Conread position: 3-589
Cow position: chr19:36352185-36351580 (view UCSC Genome Browser custom track)
Alignm length: 613
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 145

Conread position: 3-589
Cow position: chr19:48534636-48534041 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 310

Conread position: 5-587
Cow position: chr19:7472964-7472373 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 120

Conread position: 9-477
Cow position: chr19:1169013-1169496 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 137

Conread position: 9-507
Cow position: chr19:19500783-19501297 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 137

Conread position: 9-507
Cow position: chr19:20433333-20433844 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 9-553
Cow position: chr19:14180091-14180652 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 9-557
Cow position: chr19:30237615-30237054 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 139

Conread position: 9-580
Cow position: chr19:208406-207821 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 139

Conread position: 9-581
Cow position: chr19:35982663-35982091 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 148

Conread position: 9-589
Cow position: chr19:42246-41644 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 329

Conread position: 9-589
Cow position: chr19:777426-776824 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 9-589
Cow position: chr19:9704282-9704875 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 147

Conread position: 9-589
Cow position: chr19:23488664-23488070 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 39

Conread position: 9-589
Cow position: chr19:29367438-29366839 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 138

Conread position: 9-589
Cow position: chr19:29624945-29624347 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 9-589
Cow position: chr19:55163747-55164346 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 141

Conread position: 10-507
Cow position: chr19:12375472-12375976 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 16

Conread position: 10-589
Cow position: chr19:34985984-34985400 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 47

Conread position: 12-566
Cow position: chr19:26518429-26518996 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 135

Conread position: 12-580
Cow position: chr19:255218-255804 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 139

Conread position: 16-365
Cow position: chr19:44754005-44754357 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 227
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 21, 48

Conread position: 27-589
Cow position: chr19:33877308-33876727 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 120

Conread position: 29-481
Cow position: chr19:3032449-3032918 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 47

Conread position: 38-580
Cow position: chr19:176356-175789 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 108

Conread position: 50-589
Cow position: chr19:3086657-3086104 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 96

Conread position: 58-589
Cow position: chr19:33945426-33944878 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 91

Conread position: 58-589
Cow position: chr19:44839339-44839858 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 34

Conread position: 59-417
Cow position: chr19:31762279-31762659 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 263
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 117, 87

Conread position: 72-480
Cow position: chr19:1267381-1267807 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 74

Conread position: 118-589
Cow position: chr19:35843644-35843165 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 27

Conread position: 152-427
Cow position: chr19:9542934-9543227 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 209
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 53, 197

Conread position: 153-589
Cow position: chr19:17883703-17883276 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 308
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 45, 132

Conread position: 154-581
Cow position: chr19:19173427-19172973 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 126

Conread position: 188-517
Cow position: chr19:3084964-3085285 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 231
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 21, 35

Conread position: 204-472
Cow position: chr19:4360211-4359928 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 195
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 14, 140

Conread position: 211-379
Cow position: chr19:33616757-33616586 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 93, 0

Conread position: 211-512
Cow position: chr19:44216155-44216460 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 218
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 91, 127

Conread position: 211-518
Cow position: chr19:39077128-39076829 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 219
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 96, 75

Conread position: 211-581
Cow position: chr19:20671908-20672275 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 63

Conread position: 211-584
Cow position: chr19:39697169-39696801 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 60

Conread position: 211-589
Cow position: chr19:5902723-5902338 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 114

Conread position: 211-589
Cow position: chr19:7078951-7078567 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 112

Conread position: 211-589
Cow position: chr19:20612029-20611645 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 112

Conread position: 211-589
Cow position: chr19:32140692-32140308 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 44

Conread position: 211-589
Cow position: chr19:32952514-32952132 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 89

Conread position: 211-589
Cow position: chr19:35781572-35781187 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 127

Conread position: 211-589
Cow position: chr19:46821542-46821165 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 21

Conread position: 215-580
Cow position: chr19:743031-743386 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 38

Conread position: 217-589
Cow position: chr19:2269615-2269990 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 54

Conread position: 218-589
Cow position: chr19:31782258-31781882 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 111

Conread position: 221-580
Cow position: chr19:6784-6425 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 34

Conread position: 237-589
Cow position: chr19:33528516-33528158 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 86

Conread position: 241-583
Cow position: chr19:14528495-14528149 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 202

Conread position: 244-589
Cow position: chr19:2019103-2019452 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 173

Conread position: 245-512
Cow position: chr19:39726457-39726191 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 188
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 125, 57

Conread position: 246-589
Cow position: chr19:39394861-39394512 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 85

Conread position: 257-580
Cow position: chr19:405797-405469 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 233
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 51, 67

Conread position: 262-589
Cow position: chr19:3221747-3221423 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 35

Conread position: 265-440
Cow position: chr19:42297856-42298032 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 126
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 50, 73

Conread position: 306-467
Cow position: chr19:42725612-42725451 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 119
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 63, 142

Conread position: 329-589
Cow position: chr19:42867042-42866776 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 8

Conread position: 330-491
Cow position: chr19:38811932-38811767 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 131
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 7, 120

Conread position: 330-580
Cow position: chr19:1293927-1293671 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 182
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 39, 205

Conread position: 330-582
Cow position: chr19:45464710-45464453 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 180
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 40, 0

Conread position: 337-589
Cow position: chr19:1663637-1663383 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 0

Conread position: 340-522
Cow position: chr19:21337339-21337526 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 143
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 108, 0

Conread position: 377-589
Cow position: chr19:48478091-48477880 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 167
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 68, 133

Conread position: 381-581
Cow position: chr19:50020438-50020642 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 154
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 75, 124

Conread position: 396-589
Cow position: chr19:55378403-55378206 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 146
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 58, 139

Show alignments to all cow chromosomes.