Cow genome map

Conread name: rcbl0_019776.y1

Conread position: 3-411
Cow position: chr23:7374479-7374062 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 145

Conread position: 3-449
Cow position: chr23:29271695-29271246 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 18

Conread position: 3-455
Cow position: chr23:10014143-10013678 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 152

Conread position: 3-506
Cow position: chr23:29471505-29472021 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 33

Conread position: 3-536
Cow position: chr23:11404877-11405425 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 153

Conread position: 3-577
Cow position: chr23:11079083-11078498 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 77

Conread position: 3-580
Cow position: chr23:4892506-4891910 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 144

Conread position: 3-580
Cow position: chr23:15215045-15215620 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 65

Conread position: 3-580
Cow position: chr23:30622691-30623286 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 144

Conread position: 3-581
Cow position: chr23:6593119-6593711 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 144

Conread position: 3-581
Cow position: chr23:7360263-7359671 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 148

Conread position: 3-584
Cow position: chr23:2180055-2180637 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 45

Conread position: 3-587
Cow position: chr23:11080194-11079590 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 144

Conread position: 3-589
Cow position: chr23:1321592-1322190 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 35

Conread position: 3-589
Cow position: chr23:3167840-3167246 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 103

Conread position: 3-589
Cow position: chr23:5623771-5624368 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 144

Conread position: 3-589
Cow position: chr23:11344301-11343701 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 121

Conread position: 3-589
Cow position: chr23:19493662-19493053 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 144

Conread position: 3-589
Cow position: chr23:20025750-20025138 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 35

Conread position: 3-589
Cow position: chr23:24098935-24098332 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 144

Conread position: 3-589
Cow position: chr23:26829052-26828457 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 153

Conread position: 3-589
Cow position: chr23:36309014-36308417 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 144

Conread position: 4-568
Cow position: chr23:17000242-16999666 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 113

Conread position: 4-589
Cow position: chr23:15180764-15180163 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 143

Conread position: 4-589
Cow position: chr23:17404406-17403818 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 64

Conread position: 5-589
Cow position: chr23:30633785-30634390 (view UCSC Genome Browser custom track)
Alignm length: 613
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 76

Conread position: 9-368
Cow position: chr23:10554420-10554794 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 9-502
Cow position: chr23:26230917-26230422 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 205

Conread position: 9-522
Cow position: chr23:15020717-15020189 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 139

Conread position: 9-531
Cow position: chr23:38560412-38560947 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 111

Conread position: 9-580
Cow position: chr23:1398443-1399000 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 36

Conread position: 9-580
Cow position: chr23:40825585-40825015 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 79

Conread position: 9-584
Cow position: chr23:2369584-2369025 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 96

Conread position: 9-589
Cow position: chr23:671973-671376 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 9-589
Cow position: chr23:1959930-1959331 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 138

Conread position: 9-589
Cow position: chr23:3286548-3285963 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 96

Conread position: 9-589
Cow position: chr23:3302658-3302059 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 9-589
Cow position: chr23:5441720-5441122 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 9-589
Cow position: chr23:11070867-11070281 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 9-589
Cow position: chr23:11782589-11781990 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 9-589
Cow position: chr23:14215431-14216022 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 9-589
Cow position: chr23:21351152-21351745 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 9-589
Cow position: chr23:21772105-21772705 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 11-502
Cow position: chr23:23470516-23470009 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 46

Conread position: 12-482
Cow position: chr23:14738705-14738219 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 26

Conread position: 12-581
Cow position: chr23:30210917-30211449 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 135

Conread position: 12-589
Cow position: chr23:1337702-1338286 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 106

Conread position: 12-589
Cow position: chr23:8708192-8707595 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 145

Conread position: 13-589
Cow position: chr23:41015728-41015133 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 134

Conread position: 27-589
Cow position: chr23:4531917-4532493 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 120

Conread position: 29-589
Cow position: chr23:11128792-11128224 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 19

Conread position: 35-589
Cow position: chr23:8291226-8290665 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 89

Conread position: 60-441
Cow position: chr23:26840922-26840527 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 85

Conread position: 68-589
Cow position: chr23:15529328-15528791 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 78

Conread position: 69-587
Cow position: chr23:25358075-25357553 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 103

Conread position: 69-589
Cow position: chr23:4437362-4436823 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 86

Conread position: 69-589
Cow position: chr23:5870666-5871192 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 86

Conread position: 93-581
Cow position: chr23:19637204-19637681 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 47

Conread position: 120-376
Cow position: chr23:36748252-36748505 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 198
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 11, 27

Conread position: 154-581
Cow position: chr23:25670116-25670567 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 186

Conread position: 172-493
Cow position: chr23:39108186-39108518 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 36

Conread position: 207-526
Cow position: chr23:344876-345200 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 134

Conread position: 216-456
Cow position: chr23:25594541-25594303 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 170
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 82, 39

Conread position: 216-580
Cow position: chr23:3709982-3709618 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 85

Conread position: 217-568
Cow position: chr23:20541552-20541202 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 46

Conread position: 217-580
Cow position: chr23:14959378-14959737 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 55

Conread position: 218-441
Cow position: chr23:1048268-1048501 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 162
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 62, 100

Conread position: 219-431
Cow position: chr23:5539555-5539767 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 166
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 9, 105

Conread position: 237-589
Cow position: chr23:25554156-25553796 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 267

Conread position: 239-562
Cow position: chr23:36675596-36675915 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 219
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 116, 60

Conread position: 255-579
Cow position: chr23:21277093-21277419 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 196

Conread position: 260-589
Cow position: chr23:27313383-27313049 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 6

Conread position: 263-589
Cow position: chr23:28987878-28987547 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 233
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 58, 9

Conread position: 265-589
Cow position: chr23:1010019-1010340 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 230
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 35, 98

Conread position: 274-488
Cow position: chr23:25411976-25412194 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 160
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 98, 65

Conread position: 312-589
Cow position: chr23:28233378-28233094 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 193
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 136, 122

Conread position: 313-589
Cow position: chr23:20170720-20170997 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 12

Conread position: 337-580
Cow position: chr23:771028-771277 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 187
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 32, 199

Conread position: 342-583
Cow position: chr23:1325857-1326102 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 220

Conread position: 345-589
Cow position: chr23:20389566-20389817 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 181
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 25, 126

Conread position: 349-581
Cow position: chr23:24487249-24487485 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 160
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 98, 187

Conread position: 349-589
Cow position: chr23:29459802-29460045 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 188

Show alignments to all cow chromosomes.