Cow genome map

Conread name: rcbl0_019776.y1

Conread position: 2-580
Cow position: chr24:12331804-12332400 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 145

Conread position: 2-589
Cow position: chr24:5929681-5929076 (view UCSC Genome Browser custom track)
Alignm length: 613
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 145

Conread position: 2-589
Cow position: chr24:6020176-6020781 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 145

Conread position: 3-395
Cow position: chr24:24250295-24249890 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 153

Conread position: 3-433
Cow position: chr24:17412317-17411876 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 153

Conread position: 3-452
Cow position: chr24:40445542-40445108 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 298
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 204, 102

Conread position: 3-473
Cow position: chr24:39159971-39160444 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 10

Conread position: 3-491
Cow position: chr24:25424580-25424086 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 154

Conread position: 3-512
Cow position: chr24:10243660-10244184 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 144

Conread position: 3-569
Cow position: chr24:29180248-29179684 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 144

Conread position: 3-580
Cow position: chr24:6413377-6412785 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 83

Conread position: 3-580
Cow position: chr24:8608230-8607636 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 144

Conread position: 3-580
Cow position: chr24:27148978-27148411 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 297, 30

Conread position: 3-581
Cow position: chr24:16055967-16056558 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 112

Conread position: 3-584
Cow position: chr24:14760800-14760195 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 114

Conread position: 3-584
Cow position: chr24:17309530-17310126 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 31

Conread position: 3-584
Cow position: chr24:41063358-41062756 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 94

Conread position: 3-587
Cow position: chr24:3851496-3850895 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 143

Conread position: 3-588
Cow position: chr24:22975707-22975106 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 32

Conread position: 3-589
Cow position: chr24:6416063-6415459 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 152

Conread position: 3-589
Cow position: chr24:12090873-12090277 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 263

Conread position: 3-589
Cow position: chr24:18266593-18267189 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 47

Conread position: 3-589
Cow position: chr24:22047172-22047772 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 144

Conread position: 3-589
Cow position: chr24:32609205-32608608 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 42

Conread position: 3-589
Cow position: chr24:43635003-43634411 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 114

Conread position: 6-456
Cow position: chr24:35872358-35872786 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 309
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 40, 113

Conread position: 7-456
Cow position: chr24:25111145-25110684 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 151

Conread position: 9-376
Cow position: chr24:33291608-33291967 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 40

Conread position: 9-397
Cow position: chr24:11876448-11876033 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 148

Conread position: 9-502
Cow position: chr24:32359249-32359761 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 149

Conread position: 9-525
Cow position: chr24:25677592-25677073 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 207

Conread position: 9-580
Cow position: chr24:6035284-6035874 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 9-580
Cow position: chr24:6443332-6442745 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 326

Conread position: 9-580
Cow position: chr24:20604645-20604056 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 139

Conread position: 9-588
Cow position: chr24:15372684-15372078 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 148

Conread position: 9-588
Cow position: chr24:20507156-20507754 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 14

Conread position: 9-589
Cow position: chr24:3794385-3793779 (view UCSC Genome Browser custom track)
Alignm length: 613
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 145

Conread position: 9-589
Cow position: chr24:5910716-5910104 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 139

Conread position: 9-589
Cow position: chr24:11104256-11104855 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 9-589
Cow position: chr24:12146693-12147290 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 139

Conread position: 9-589
Cow position: chr24:12696228-12696826 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 9-589
Cow position: chr24:18113352-18112752 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 139

Conread position: 9-589
Cow position: chr24:22795451-22794856 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 140

Conread position: 9-589
Cow position: chr24:26412942-26412346 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 9-589
Cow position: chr24:32360962-32361556 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 238

Conread position: 9-589
Cow position: chr24:38296952-38296353 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 9-589
Cow position: chr24:40466518-40467116 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 75

Conread position: 9-589
Cow position: chr24:45010079-45009484 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 132

Conread position: 10-589
Cow position: chr24:16080596-16081190 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 33

Conread position: 11-589
Cow position: chr24:31382260-31381696 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 34

Conread position: 12-580
Cow position: chr24:32854101-32853519 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 94

Conread position: 12-589
Cow position: chr24:32823241-32823825 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 135

Conread position: 13-536
Cow position: chr24:9176131-9176655 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 341
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 37, 56

Conread position: 13-589
Cow position: chr24:12202618-12203214 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 104

Conread position: 13-589
Cow position: chr24:25372994-25372400 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 134

Conread position: 14-581
Cow position: chr24:31758411-31758982 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 74

Conread position: 18-373
Cow position: chr24:22288415-22288055 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 248
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 28, 109

Conread position: 21-589
Cow position: chr24:40518729-40519306 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 126

Conread position: 27-568
Cow position: chr24:12991641-12991098 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 120

Conread position: 28-589
Cow position: chr24:11462133-11462714 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 123

Conread position: 28-589
Cow position: chr24:36710700-36710139 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 110

Conread position: 30-579
Cow position: chr24:40347205-40347766 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 111

Conread position: 34-489
Cow position: chr24:5607944-5608422 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 129

Conread position: 39-580
Cow position: chr24:45087388-45086830 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 47

Conread position: 45-529
Cow position: chr24:40253489-40253000 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 335
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 148, 116

Conread position: 50-568
Cow position: chr24:41671706-41671177 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 96

Conread position: 69-589
Cow position: chr24:17105048-17105580 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 58

Conread position: 76-508
Cow position: chr24:14308615-14308157 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 79

Conread position: 88-580
Cow position: chr24:36267990-36268498 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 58

Conread position: 90-512
Cow position: chr24:31302499-31302064 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 56

Conread position: 91-589
Cow position: chr24:32849940-32849436 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 333
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 105, 61

Conread position: 192-589
Cow position: chr24:17368237-17368625 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 17

Conread position: 211-484
Cow position: chr24:36131518-36131805 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 210
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 98, 10

Conread position: 211-577
Cow position: chr24:31357266-31356906 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 117

Conread position: 211-580
Cow position: chr24:9071166-9071534 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 34

Conread position: 211-580
Cow position: chr24:35823525-35823898 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 27

Conread position: 211-580
Cow position: chr24:39956429-39956796 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 119

Conread position: 211-589
Cow position: chr24:15667072-15667450 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 54

Conread position: 211-589
Cow position: chr24:26388228-26388596 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 129

Conread position: 211-589
Cow position: chr24:36779941-36779568 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 113

Conread position: 217-468
Cow position: chr24:42581872-42582137 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 197
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 64, 105

Conread position: 217-589
Cow position: chr24:33937603-33937226 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 123

Conread position: 218-587
Cow position: chr24:13191834-13191460 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 122

Conread position: 218-589
Cow position: chr24:28336390-28336760 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 111

Conread position: 220-561
Cow position: chr24:19251293-19250970 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 240
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 79, 117

Conread position: 227-522
Cow position: chr24:37887002-37886709 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 214
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 72, 44

Conread position: 232-521
Cow position: chr24:7404263-7404551 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 26

Conread position: 232-589
Cow position: chr24:36036171-36036529 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 108

Conread position: 281-587
Cow position: chr24:12119358-12119663 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 228
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 19, 48

Conread position: 303-589
Cow position: chr24:25698526-25698241 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 164
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 246, 61

Conread position: 330-589
Cow position: chr24:36726715-36726453 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 41

Conread position: 336-589
Cow position: chr24:14609320-14609568 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 187
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 34, 104

Conread position: 340-466
Cow position: chr24:39681064-39680940 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 108
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 29, 38

Conread position: 347-589
Cow position: chr24:6524542-6524294 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 347-589
Cow position: chr24:36721990-36721741 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 186
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 23, 7

Conread position: 348-581
Cow position: chr24:40120555-40120793 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 172
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 22, 163

Conread position: 348-589
Cow position: chr24:5279757-5279509 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 177
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 21, 188

Conread position: 353-572
Cow position: chr24:14515917-14516139 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 160
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 17, 26

Conread position: 354-580
Cow position: chr24:25439743-25439508 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 172
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 94, 0

Conread position: 391-581
Cow position: chr24:29181853-29181664 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 147
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 60, 135

Conread position: 403-589
Cow position: chr24:24249017-24249205 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 140
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 36, 45

Conread position: 413-574
Cow position: chr24:6544055-6543891 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 131
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 38, 123

Conread position: 447-589
Cow position: chr24:39680934-39680792 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 118
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 93, 103

Show alignments to all cow chromosomes.