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Cow genome map

           
Conread name:
           
rcbl_0644.y1
        

               
Conread position:
               
1-170
               

               
Cow position:
               
chr24:24755342-24755522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
1-183
               

               
Cow position:
               
chr24:38841512-38841334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
18, 47
               

               
Conread position:
               
1-188
               

               
Cow position:
               
chr24:29063757-29063566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
21, 39
               

               
Conread position:
               
1-189
               

               
Cow position:
               
chr24:15246747-15246549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
1-189
               

               
Cow position:
               
chr24:33098586-33098379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
1-194
               

               
Cow position:
               
chr24:16089127-16089326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
21, 34
               

               
Conread position:
               
1-201
               

               
Cow position:
               
chr24:28721788-28721990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
21, 44
               

               
Conread position:
               
1-204
               

               
Cow position:
               
chr24:16994779-16994990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
16, 40
               

               
Conread position:
               
1-204
               

               
Cow position:
               
chr24:37975084-37974872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
37, 67
               

               
Conread position:
               
1-206
               

               
Cow position:
               
chr24:27290762-27290982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr24:29586886-29587110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
18, 40
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr24:6102720-6102941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr24:17832916-17832704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
21, 65
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr24:41068164-41068381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
90, 42
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chr24:28690586-28690803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
45, 24
               

               
Conread position:
               
1-304
               

               
Cow position:
               
chr24:18390393-18390103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
25, 60
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr24:2675219-2675515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
20, 62
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr24:16895539-16895242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
46, 181
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr24:43364257-43364591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
20, 123
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr24:24457354-24457049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
20, 179
               

               
Conread position:
               
2-188
               

               
Cow position:
               
chr24:24491118-24490925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
41, 65
               

               
Conread position:
               
3-184
               

               
Cow position:
               
chr24:28319313-28319120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
20, 37
               

               
Conread position:
               
3-198
               

               
Cow position:
               
chr24:33372457-33372654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
19, 59
               

               
Conread position:
               
3-200
               

               
Cow position:
               
chr24:27748544-27748746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
18, 49
               

               
Conread position:
               
3-201
               

               
Cow position:
               
chr24:7777717-7777523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
56, 20
               

               
Conread position:
               
3-202
               

               
Cow position:
               
chr24:31816475-31816685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
3-206
               

               
Cow position:
               
chr24:21519333-21519538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
22, 45
               

               
Conread position:
               
3-214
               

               
Cow position:
               
chr24:6912465-6912245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
38, 10
               

               
Conread position:
               
5-144
               

               
Cow position:
               
chr24:40823989-40824131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
88, 48
               

               
Conread position:
               
5-175
               

               
Cow position:
               
chr24:8886813-8886990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
5-178
               

               
Cow position:
               
chr24:4724878-4725051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
81, 32
               

               
Conread position:
               
5-178
               

               
Cow position:
               
chr24:29170872-29171044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
88, 33
               

               
Conread position:
               
5-179
               

               
Cow position:
               
chr24:17752210-17752029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
41, 170
               

               
Conread position:
               
5-179
               

               
Cow position:
               
chr24:19736432-19736251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
38, 177
               

               
Conread position:
               
5-183
               

               
Cow position:
               
chr24:31324185-31324372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
45, 152
               

               
Conread position:
               
5-188
               

               
Cow position:
               
chr24:10299984-10300169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
41, 92
               

               
Conread position:
               
5-189
               

               
Cow position:
               
chr24:28553649-28553472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
49, 89
               

               
Conread position:
               
5-189
               

               
Cow position:
               
chr24:35576630-35576446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
41, 147
               

               
Conread position:
               
5-189
               

               
Cow position:
               
chr24:39911134-39910940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
52, 164
               

               
Conread position:
               
5-192
               

               
Cow position:
               
chr24:29389144-29389329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
74, 38
               

               
Conread position:
               
5-195
               

               
Cow position:
               
chr24:16895227-16895038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
41, 90
               

               
Conread position:
               
5-195
               

               
Cow position:
               
chr24:42825591-42825405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
5-196
               

               
Cow position:
               
chr24:11840092-11840286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
44, 170
               

               
Conread position:
               
5-198
               

               
Cow position:
               
chr24:15861697-15861491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
16, 12
               

               
Conread position:
               
5-198
               

               
Cow position:
               
chr24:16509874-16510080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
5-198
               

               
Cow position:
               
chr24:17104669-17104467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
5-198
               

               
Cow position:
               
chr24:28600536-28600328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
5-200
               

               
Cow position:
               
chr24:17955538-17955340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
5-201
               

               
Cow position:
               
chr24:19535351-19535150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
5-201
               

               
Cow position:
               
chr24:28062855-28063053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
51, 22
               

               
Conread position:
               
5-201
               

               
Cow position:
               
chr24:29679406-29679205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
44, 109
               

               
Conread position:
               
5-201
               

               
Cow position:
               
chr24:32190968-32191161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
80, 33
               

               
Conread position:
               
5-201
               

               
Cow position:
               
chr24:39523544-39523343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
5-204
               

               
Cow position:
               
chr24:3493789-3493993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
5-206
               

               
Cow position:
               
chr24:26554695-26554486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
40, 18
               

               
Conread position:
               
5-206
               

               
Cow position:
               
chr24:28342253-28342469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
14, 35
               

               
Conread position:
               
5-206
               

               
Cow position:
               
chr24:36711104-36711305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
85, 37
               

               
Conread position:
               
5-207
               

               
Cow position:
               
chr24:27906341-27906550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
48, 165
               

               
Conread position:
               
5-207
               

               
Cow position:
               
chr24:30235770-30235981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
33, 187
               

               
Conread position:
               
5-207
               

               
Cow position:
               
chr24:44987475-44987263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
5-209
               

               
Cow position:
               
chr24:32204891-32204681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
46, 33
               

               
Conread position:
               
5-209
               

               
Cow position:
               
chr24:33944306-33944515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
38, 62
               

               
Conread position:
               
5-209
               

               
Cow position:
               
chr24:34008673-34008461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
46, 196
               

               
Conread position:
               
5-209
               

               
Cow position:
               
chr24:42103278-42103473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
41, 92
               

               
Conread position:
               
5-212
               

               
Cow position:
               
chr24:18741667-18741455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
5-213
               

               
Cow position:
               
chr24:40130030-40130247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
5-214
               

               
Cow position:
               
chr24:41405800-41406013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
90, 38
               

               
Conread position:
               
5-215
               

               
Cow position:
               
chr24:19466018-19465800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
32, 170
               

               
Conread position:
               
5-220
               

               
Cow position:
               
chr24:19769391-19769618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
44, 199
               

               
Conread position:
               
5-220
               

               
Cow position:
               
chr24:37395306-37395091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
41, 175
               

               
Conread position:
               
5-222
               

               
Cow position:
               
chr24:24662227-24662002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
5-228
               

               
Cow position:
               
chr24:35150425-35150652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
41, 103
               

               
Conread position:
               
5-232
               

               
Cow position:
               
chr24:32070870-32071103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
74, 30
               

               
Conread position:
               
5-267
               

               
Cow position:
               
chr24:18331625-18331882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
59, 32
               

               
Conread position:
               
5-287
               

               
Cow position:
               
chr24:33465709-33465437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 38
               

               
Conread position:
               
5-304
               

               
Cow position:
               
chr24:15373310-15373603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
47, 181
               

               
Conread position:
               
5-304
               

               
Cow position:
               
chr24:28289346-28289057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
88, 52
               

               
Conread position:
               
5-304
               

               
Cow position:
               
chr24:39905547-39905251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
88, 38
               

               
Conread position:
               
5-307
               

               
Cow position:
               
chr24:11119188-11119472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
74, 38
               

               
Conread position:
               
5-307
               

               
Cow position:
               
chr24:30308654-30308348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
37, 154
               

               
Conread position:
               
5-309
               

               
Cow position:
               
chr24:18614902-18615196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
50, 154
               

               
Conread position:
               
5-310
               

               
Cow position:
               
chr24:14648447-14648143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
88, 31
               

               
Conread position:
               
5-311
               

               
Cow position:
               
chr24:5683180-5683491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 139
               

               
Conread position:
               
5-311
               

               
Cow position:
               
chr24:6450400-6450691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
42, 108
               

               
Conread position:
               
6-194
               

               
Cow position:
               
chr24:20807439-20807633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
42, 129
               

               
Conread position:
               
6-201
               

               
Cow position:
               
chr24:2402464-2402264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
49, 171
               

               
Conread position:
               
6-209
               

               
Cow position:
               
chr24:34742656-34742865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
40, 193
               

               
Conread position:
               
6-217
               

               
Cow position:
               
chr24:28327182-28326960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
38, 186
               

               
Conread position:
               
6-311
               

               
Cow position:
               
chr24:40850068-40850370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
15, 9
               

               
Conread position:
               
7-176
               

               
Cow position:
               
chr24:7046843-7046669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
7-184
               

               
Cow position:
               
chr24:27418196-27418015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
50, 92
               

               
Conread position:
               
7-189
               

               
Cow position:
               
chr24:34390190-34390370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
14, 87
               

               
Conread position:
               
7-189
               

               
Cow position:
               
chr24:34396269-34396086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
72, 36
               

               
Conread position:
               
7-201
               

               
Cow position:
               
chr24:19637489-19637695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
56, 35
               

               
Conread position:
               
7-230
               

               
Cow position:
               
chr24:18970602-18970374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
45, 203
               

               
Conread position:
               
9-188
               

               
Cow position:
               
chr24:11887063-11887250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
13, 31
               

               
Conread position:
               
12-189
               

               
Cow position:
               
chr24:38811561-38811377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
41, 25
               

               
Conread position:
               
12-189
               

               
Cow position:
               
chr24:43200369-43200182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
32, 105
               

               
Conread position:
               
12-209
               

               
Cow position:
               
chr24:38006798-38006605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
10, 32
               

               
Conread position:
               
13-204
               

               
Cow position:
               
chr24:24532087-24532283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
10, 79
               

               
Conread position:
               
13-204
               

               
Cow position:
               
chr24:27844619-27844421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
41, 177
               

               
Conread position:
               
14-214
               

               
Cow position:
               
chr24:20225656-20225857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
77, 48
               

               
Conread position:
               
15-184
               

               
Cow position:
               
chr24:28990475-28990648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
46, 166
               

               
Conread position:
               
15-201
               

               
Cow position:
               
chr24:14550705-14550899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
22, 94
               

               
Conread position:
               
15-204
               

               
Cow position:
               
chr24:28699963-28700160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
48, 35
               

               
Conread position:
               
16-188
               

               
Cow position:
               
chr24:22647424-22647249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
60, 34
               

               
Conread position:
               
16-197
               

               
Cow position:
               
chr24:17434531-17434712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
94, 84
               

               
Conread position:
               
17-201
               

               
Cow position:
               
chr24:31159536-31159721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
35, 85
               

               
Conread position:
               
19-198
               

               
Cow position:
               
chr24:32124723-32124541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
30, 67
               

               
Conread position:
               
19-207
               

               
Cow position:
               
chr24:2992960-2992771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
44, 7
               

               
Conread position:
               
20-149
               

               
Cow position:
               
chr24:26787769-26787902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
20-167
               

               
Cow position:
               
chr24:3160753-3160903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
20-174
               

               
Cow position:
               
chr24:23616615-23616776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
35, 18
               

               
Conread position:
               
20-177
               

               
Cow position:
               
chr24:32370000-32369833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
20-189
               

               
Cow position:
               
chr24:34496036-34496218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
20-192
               

               
Cow position:
               
chr24:16268210-16268032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
20-200
               

               
Cow position:
               
chr24:32054578-32054765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
33, 132
               

               
Conread position:
               
20-201
               

               
Cow position:
               
chr24:18017146-18017333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
20-201
               

               
Cow position:
               
chr24:40389525-40389709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
33, 134
               

               
Conread position:
               
20-204
               

               
Cow position:
               
chr24:30229389-30229586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
20-205
               

               
Cow position:
               
chr24:16645405-16645209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
20-207
               

               
Cow position:
               
chr24:352687-352495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
27, 110
               

               
Conread position:
               
20-207
               

               
Cow position:
               
chr24:22079380-22079572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
38, 112
               

               
Conread position:
               
20-207
               

               
Cow position:
               
chr24:27149314-27149495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
20-208
               

               
Cow position:
               
chr24:30484032-30483828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
20-215
               

               
Cow position:
               
chr24:12851634-12851823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
73, 56
               

               
Conread position:
               
20-216
               

               
Cow position:
               
chr24:27039965-27040166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
26, 54
               

               
Conread position:
               
20-330
               

               
Cow position:
               
chr24:16118283-16118603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
73, 30
               

               
Conread position:
               
21-189
               

               
Cow position:
               
chr24:22999930-23000108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
22, 93
               

               
Conread position:
               
21-207
               

               
Cow position:
               
chr24:18810762-18810943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
28, 76
               

               
Conread position:
               
21-208
               

               
Cow position:
               
chr24:6151713-6151903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
43, 22
               

               
Conread position:
               
22-207
               

               
Cow position:
               
chr24:12200492-12200297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
22-214
               

               
Cow position:
               
chr24:27284740-27284934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
30, 92
               

               
Conread position:
               
22-259
               

               
Cow position:
               
chr24:27349260-27349004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
24-148
               

               
Cow position:
               
chr24:40837699-40837825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
19, 64
               

               
Conread position:
               
24-187
               

               
Cow position:
               
chr24:19623780-19623947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
24-207
               

               
Cow position:
               
chr24:42862545-42862734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
27, 133
               

               
Conread position:
               
25-196
               

               
Cow position:
               
chr24:27202013-27202189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
34, 8
               

               
Conread position:
               
27-189
               

               
Cow position:
               
chr24:6742150-6742315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
5, 20
               

               
Conread position:
               
34-218
               

               
Cow position:
               
chr24:11028754-11028568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
20, 57
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr24:28042910-28043078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
35-304
               

               
Cow position:
               
chr24:11007397-11007683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
58, 22
               

               
Conread position:
               
36-197
               

               
Cow position:
               
chr24:31812127-31812292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
57, 26
               

               
Conread position:
               
36-296
               

               
Cow position:
               
chr24:39791479-39791730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
57, 26
               

               
Conread position:
               
36-304
               

               
Cow position:
               
chr24:34533051-34533312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
19, 58
               

               
Conread position:
               
37-175
               

               
Cow position:
               
chr24:26001326-26001467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
54, 25
               

               
Conread position:
               
37-187
               

               
Cow position:
               
chr24:34272743-34272902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
37-196
               

               
Cow position:
               
chr24:36286509-36286668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
51, 145
               

               
Conread position:
               
37-198
               

               
Cow position:
               
chr24:5360657-5360819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
56, 75
               

               
Conread position:
               
37-204
               

               
Cow position:
               
chr24:390042-390212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
38-207
               

               
Cow position:
               
chr24:26880694-26880864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
55, 15
               

               
Conread position:
               
39-209
               

               
Cow position:
               
chr24:28470738-28470566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
54, 17
               

               
Conread position:
               
41-312
               

               
Cow position:
               
chr24:12889988-12889711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
50, 16
               

               
Conread position:
               
42-317
               

               
Cow position:
               
chr24:40404866-40404595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
10, 69
               

               
Conread position:
               
43-205
               

               
Cow position:
               
chr24:17375582-17375747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
36, 141
               

               
Conread position:
               
43-311
               

               
Cow position:
               
chr24:18328528-18328275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
12, 69
               

               
Conread position:
               
45-241
               

               
Cow position:
               
chr24:42981812-42981618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
48, 19
               

               
Conread position:
               
46-310
               

               
Cow position:
               
chr24:18313993-18313736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
39, 26
               

               
Conread position:
               
50-204
               

               
Cow position:
               
chr24:19186893-19187044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
60, 43
               

               
Conread position:
               
50-205
               

               
Cow position:
               
chr24:26848777-26848624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
37, 13
               

               
Conread position:
               
51-304
               

               
Cow position:
               
chr24:40983084-40983333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
42, 13
               

               
Conread position:
               
51-320
               

               
Cow position:
               
chr24:34555988-34556252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
41, 103
               

               
Conread position:
               
53-201
               

               
Cow position:
               
chr24:22133126-22133277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
40, 9
               

               
Conread position:
               
54-306
               

               
Cow position:
               
chr24:15263831-15264083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
39, 6
               

               
Conread position:
               
57-174
               

               
Cow position:
               
chr24:29538553-29538427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
57-201
               

               
Cow position:
               
chr24:15347547-15347696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
36, 115
               

               
Conread position:
               
57-206
               

               
Cow position:
               
chr24:27448602-27448756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
32, 113
               

               
Conread position:
               
57-215
               

               
Cow position:
               
chr24:18750662-18750825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
36, 20
               

               
Conread position:
               
57-286
               

               
Cow position:
               
chr24:34465548-34465336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
36, 136
               

               
Conread position:
               
57-312
               

               
Cow position:
               
chr24:20969704-20969463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
47, 125
               

               
Conread position:
               
58-201
               

               
Cow position:
               
chr24:41412335-41412191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
61-188
               

               
Cow position:
               
chr24:2730650-2730523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
30, 40
               

               
Conread position:
               
61-209
               

               
Cow position:
               
chr24:18668540-18668690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
29, 63
               

               
Conread position:
               
62-201
               

               
Cow position:
               
chr24:17294227-17294092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
48, 31
               

               
Conread position:
               
62-201
               

               
Cow position:
               
chr24:36303354-36303209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
62-207
               

               
Cow position:
               
chr24:13888667-13888814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
62-222
               

               
Cow position:
               
chr24:7390370-7390211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
31, 51
               

               
Conread position:
               
63-204
               

               
Cow position:
               
chr24:32891080-32890935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
63-208
               

               
Cow position:
               
chr24:5143996-5143847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
5, 136
               

               
Conread position:
               
66-207
               

               
Cow position:
               
chr24:32230541-32230393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
67-187
               

               
Cow position:
               
chr24:17689643-17689520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
23, 101
               

               
Conread position:
               
68-201
               

               
Cow position:
               
chr24:41566126-41565997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
37, 25
               

               
Conread position:
               
68-296
               

               
Cow position:
               
chr24:14786348-14786583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
69-188
               

               
Cow position:
               
chr24:5152493-5152616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
72-196
               

               
Cow position:
               
chr24:21623198-21623323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
75-198
               

               
Cow position:
               
chr24:34302060-34301936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
24, 44
               

               
Conread position:
               
78-223
               

               
Cow position:
               
chr24:22235448-22235595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
78-311
               

               
Cow position:
               
chr24:19779371-19779158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
10, 51
               

               
Conread position:
               
79-204
               

               
Cow position:
               
chr24:31383100-31383224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
31, 23
               

               
Conread position:
               
79-207
               

               
Cow position:
               
chr24:18874839-18874711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
8, 84
               

               
Conread position:
               
79-311
               

               
Cow position:
               
chr24:30202806-30203035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
8, 89
               

               
Conread position:
               
82-198
               

               
Cow position:
               
chr24:7113207-7113325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
85-209
               

               
Cow position:
               
chr24:4635179-4635054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
85-209
               

               
Cow position:
               
chr24:39218563-39218436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
85-300
               

               
Cow position:
               
chr24:256015-256229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
25, 155
               

               
Conread position:
               
85-304
               

               
Cow position:
               
chr24:1831573-1831360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
118, 23
               

               
Conread position:
               
86-206
               

               
Cow position:
               
chr24:29013956-29014077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
86-207
               

               
Cow position:
               
chr24:161993-162115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
86-209
               

               
Cow position:
               
chr24:27553085-27553208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
23, 57
               

               
Conread position:
               
86-209
               

               
Cow position:
               
chr24:29677926-29677801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
86-311
               

               
Cow position:
               
chr24:873438-873665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
23, 110
               

               
Conread position:
               
87-308
               

               
Cow position:
               
chr24:13058014-13058239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
98, 219
               

               
Conread position:
               
87-311
               

               
Cow position:
               
chr24:32818309-32818097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
168, 22
               

               
Conread position:
               
92-311
               

               
Cow position:
               
chr24:18811669-18811449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
103, 200
               

               
Conread position:
               
95-307
               

               
Cow position:
               
chr24:43024259-43024459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
15, 110
               

               
Conread position:
               
97-312
               

               
Cow position:
               
chr24:42430594-42430817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
9, 57
               

               
Conread position:
               
100-218
               

               
Cow position:
               
chr24:2353674-2353794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
108-222
               

               
Cow position:
               
chr24:10840907-10840793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-308
               

               
Cow position:
               
chr24:39345361-39345165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
112-195
               

               
Cow position:
               
chr24:27719510-27719427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
84
               

               
Alignm identity:
               
74
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
115-310
               

               
Cow position:
               
chr24:28186494-28186303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
76, 119
               

               
Conread position:
               
122-312
               

               
Cow position:
               
chr24:27168335-27168517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
38, 70
               

               
Conread position:
               
123-311
               

               
Cow position:
               
chr24:40185152-40185338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
76, 11
               

               
Conread position:
               
131-311
               

               
Cow position:
               
chr24:3152307-3152127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
63, 79
               

               
Conread position:
               
142-301
               

               
Cow position:
               
chr24:39259747-39259907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
117, 96
               
Show alignments to all cow chromosomes.