Cow genome map
| Conread name: | rcki26_b12.y1 |
| Conread position: | 7-356 |
| Cow position: | chr1:53495067-53495423 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 34 |
| Conread position: | 13-390 |
| Cow position: | chr1:41004754-41004373 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 21 |
| Conread position: | 33-359 |
| Cow position: | chr1:18196487-18196819 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 223 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 158, 216 |
| Conread position: | 33-359 |
| Cow position: | chr1:52354783-52354452 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 158, 29 |
| Conread position: | 33-397 |
| Cow position: | chr1:9593524-9593163 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 254 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 225, 140 |
| Conread position: | 34-299 |
| Cow position: | chr1:54295032-54294763 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 196 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 111, 218 |
| Conread position: | 34-329 |
| Cow position: | chr1:40062079-40062376 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 208 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 34-339 |
| Cow position: | chr1:23623785-23624110 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 19, 226 |
| Conread position: | 34-350 |
| Cow position: | chr1:4026820-4027141 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 154, 102 |
| Conread position: | 34-363 |
| Cow position: | chr1:11854058-11853723 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 232 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 153, 215 |
| Conread position: | 34-364 |
| Cow position: | chr1:53397616-53397948 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 230 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 146, 210 |
| Conread position: | 34-364 |
| Cow position: | chr1:101551089-101551418 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 215 |
| Conread position: | 34-368 |
| Cow position: | chr1:93499255-93499590 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 47 |
| Conread position: | 34-371 |
| Cow position: | chr1:12596272-12595934 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 244 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 108, 178 |
| Conread position: | 34-376 |
| Cow position: | chr1:22728681-22729026 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 55 |
| Conread position: | 34-376 |
| Cow position: | chr1:58419556-58419912 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 247 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 116, 226 |
| Conread position: | 34-382 |
| Cow position: | chr1:41696693-41697039 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 120 |
| Conread position: | 34-382 |
| Cow position: | chr1:84812318-84811961 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 254 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 113, 228 |
| Conread position: | 34-383 |
| Cow position: | chr1:31341422-31341068 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 342 |
| Conread position: | 34-386 |
| Cow position: | chr1:61725481-61725130 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 215 |
| Conread position: | 35-307 |
| Cow position: | chr1:50634778-50634499 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 115, 66 |
| Conread position: | 35-307 |
| Cow position: | chr1:92198410-92198674 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 226, 12 |
| Conread position: | 35-333 |
| Cow position: | chr1:33716854-33717156 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 215 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 110, 30 |
| Conread position: | 35-345 |
| Cow position: | chr1:22826800-22827110 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 227 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 117, 96 |
| Conread position: | 35-347 |
| Cow position: | chr1:14561318-14561000 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 205 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 109, 217 |
| Conread position: | 35-355 |
| Cow position: | chr1:64678342-64678649 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 153, 65 |
| Conread position: | 35-359 |
| Cow position: | chr1:68717347-68717021 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 152, 99 |
| Conread position: | 35-361 |
| Cow position: | chr1:51980860-51981183 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 214 |
| Conread position: | 35-368 |
| Cow position: | chr1:91817138-91816805 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 104 |
| Conread position: | 35-382 |
| Cow position: | chr1:68619286-68618952 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 248 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 223, 102 |
| Conread position: | 35-383 |
| Cow position: | chr1:31765761-31765407 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 61 |
| Conread position: | 35-387 |
| Cow position: | chr1:61564431-61564783 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 27 |
| Conread position: | 35-397 |
| Cow position: | chr1:92963023-92963389 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 259 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 117, 215 |
| Conread position: | 40-300 |
| Cow position: | chr1:2318000-2317743 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 178, 73 |
| Conread position: | 40-362 |
| Cow position: | chr1:3340568-3340896 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 235 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 91, 219 |
| Conread position: | 40-362 |
| Cow position: | chr1:90640670-90640992 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 237 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 148, 64 |
| Conread position: | 40-367 |
| Cow position: | chr1:61350791-61351111 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 225 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 150, 94 |
| Conread position: | 40-370 |
| Cow position: | chr1:11226607-11226277 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 139 |
| Conread position: | 40-371 |
| Cow position: | chr1:35162047-35162379 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 37 |
| Conread position: | 40-380 |
| Cow position: | chr1:62963922-62964254 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 241 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 148, 13 |
| Conread position: | 41-315 |
| Cow position: | chr1:61005923-61005652 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 202 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 147, 95 |
| Conread position: | 41-368 |
| Cow position: | chr1:79590739-79591074 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 208 |
| Conread position: | 42-389 |
| Cow position: | chr1:98551360-98551704 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 246 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 146, 86 |
| Conread position: | 43-364 |
| Cow position: | chr1:1801789-1802101 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 228 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 264, 12 |
| Conread position: | 55-313 |
| Cow position: | chr1:98494083-98494334 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 203, 79 |
| Conread position: | 58-376 |
| Cow position: | chr1:11772425-11772101 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 130, 192 |
| Conread position: | 61-393 |
| Cow position: | chr1:98562819-98563152 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 148 |
| Conread position: | 73-377 |
| Cow position: | chr1:7350209-7350517 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 115, 176 |
| Conread position: | 80-368 |
| Cow position: | chr1:95687423-95687136 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 186, 99 |
| Conread position: | 80-376 |
| Cow position: | chr1:95215498-95215206 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 217 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 110, 24 |
| Conread position: | 82-329 |
| Cow position: | chr1:90836323-90836075 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 108, 59 |
| Conread position: | 87-397 |
| Cow position: | chr1:65530219-65529906 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 222 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 104, 162 |
| Conread position: | 88-364 |
| Cow position: | chr1:73561963-73561687 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 77 |
| Conread position: | 88-386 |
| Cow position: | chr1:88652317-88652615 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 221 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 100, 91 |
| Conread position: | 104-350 |
| Cow position: | chr1:33811636-33811878 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 83, 140 |
| Conread position: | 106-381 |
| Cow position: | chr1:81613089-81613369 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 82, 143 |
| Conread position: | 109-371 |
| Cow position: | chr1:1991723-1991452 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 41, 145 |
| Conread position: | 118-330 |
| Cow position: | chr1:27358657-27358875 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 32, 133 |
| Conread position: | 123-380 |
| Cow position: | chr1:40599773-40600018 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 181, 60 |
| Conread position: | 125-380 |
| Cow position: | chr1:42968591-42968339 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 63, 27 |
| Conread position: | 127-329 |
| Cow position: | chr1:55686494-55686293 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 66, 79 |
| Conread position: | 132-313 |
| Cow position: | chr1:61742238-61742060 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 48, 107 |
| Conread position: | 139-339 |
| Cow position: | chr1:52488221-52488025 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 59, 45 |
| Conread position: | 139-379 |
| Cow position: | chr1:90864563-90864316 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 49, 110 |
| Conread position: | 141-364 |
| Cow position: | chr1:82338046-82337818 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 34, 66 |
| Conread position: | 141-372 |
| Cow position: | chr1:95327414-95327180 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 46, 108 |
| Conread position: | 141-378 |
| Cow position: | chr1:21835685-21835921 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 11, 106 |
| Conread position: | 141-387 |
| Cow position: | chr1:45535441-45535691 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 186 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 117, 107 |
| Conread position: | 142-361 |
| Cow position: | chr1:51628762-51628539 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 48, 108 |
| Conread position: | 145-356 |
| Cow position: | chr1:52994767-52994975 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 43, 34 |
| Conread position: | 147-386 |
| Cow position: | chr1:29935636-29935400 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 45, 32 |
| Conread position: | 151-364 |
| Cow position: | chr1:75967185-75967394 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 37, 90 |
| Conread position: | 154-363 |
| Cow position: | chr1:93528442-93528660 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 32, 102 |
| Conread position: | 155-382 |
| Cow position: | chr1:3244603-3244828 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 36, 97 |
| Conread position: | 156-315 |
| Cow position: | chr1:26159678-26159518 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 31, 142 |
| Conread position: | 171-387 |
| Cow position: | chr1:100393393-100393181 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 7, 16 |
Show alignments to all cow chromosomes.