Cow genome map
| Conread name: | rcki26_b12.y1 |
| Conread position: | 21-300 |
| Cow position: | chr11:55117066-55117346 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 111 |
| Conread position: | 22-376 |
| Cow position: | chr11:25336665-25337026 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 231 |
| Conread position: | 33-299 |
| Cow position: | chr11:18117894-18118159 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 148, 158 |
| Conread position: | 33-368 |
| Cow position: | chr11:951880-952211 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 155, 75 |
| Conread position: | 34-316 |
| Cow position: | chr11:83357002-83357283 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 100 |
| Conread position: | 34-319 |
| Cow position: | chr11:1849556-1849272 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 90 |
| Conread position: | 34-329 |
| Cow position: | chr11:37118091-37118389 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 177 |
| Conread position: | 34-337 |
| Cow position: | chr11:13061612-13061320 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 154, 97 |
| Conread position: | 34-349 |
| Cow position: | chr11:3303443-3303755 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 215 |
| Conread position: | 34-361 |
| Cow position: | chr11:41239665-41239335 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 146 |
| Conread position: | 34-364 |
| Cow position: | chr11:62979084-62979427 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 215 |
| Conread position: | 34-368 |
| Cow position: | chr11:62750143-62749812 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 145 |
| Conread position: | 34-371 |
| Cow position: | chr11:10076381-10076713 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 243 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 155, 195 |
| Conread position: | 34-371 |
| Cow position: | chr11:16251649-16251301 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 222 |
| Conread position: | 34-382 |
| Cow position: | chr11:81174497-81174847 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 145 |
| Conread position: | 34-386 |
| Cow position: | chr11:8525495-8525152 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 240 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 224, 19 |
| Conread position: | 34-387 |
| Cow position: | chr11:50153210-50152853 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 65 |
| Conread position: | 35-298 |
| Cow position: | chr11:76767973-76768236 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 151, 146 |
| Conread position: | 35-312 |
| Cow position: | chr11:29013994-29014280 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 102, 167 |
| Conread position: | 35-337 |
| Cow position: | chr11:4412412-4412105 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 219 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 146, 216 |
| Conread position: | 35-361 |
| Cow position: | chr11:44637153-44636822 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 232 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 153, 200 |
| Conread position: | 35-364 |
| Cow position: | chr11:17321269-17321598 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 148 |
| Conread position: | 35-364 |
| Cow position: | chr11:35363104-35363437 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 53 |
| Conread position: | 35-371 |
| Cow position: | chr11:48271809-48272143 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 28 |
| Conread position: | 35-380 |
| Cow position: | chr11:40467514-40467161 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 37 |
| Conread position: | 35-381 |
| Cow position: | chr11:64029648-64029306 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 213 |
| Conread position: | 40-334 |
| Cow position: | chr11:22103375-22103661 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 139 |
| Conread position: | 40-363 |
| Cow position: | chr11:30879290-30879615 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 112, 213 |
| Conread position: | 40-364 |
| Cow position: | chr11:7589805-7590132 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 147, 87 |
| Conread position: | 40-390 |
| Cow position: | chr11:42793346-42793008 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 247 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 148, 13 |
| Conread position: | 40-394 |
| Cow position: | chr11:43897748-43898108 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 211 |
| Conread position: | 41-386 |
| Cow position: | chr11:69118914-69119254 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 14 |
| Conread position: | 42-387 |
| Cow position: | chr11:3833733-3833393 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 198 |
| Conread position: | 43-363 |
| Cow position: | chr11:5032161-5031836 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 136 |
| Conread position: | 44-382 |
| Cow position: | chr11:67746894-67747241 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 133, 170 |
| Conread position: | 48-359 |
| Cow position: | chr11:49170939-49170630 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 218, 141 |
| Conread position: | 50-355 |
| Cow position: | chr11:33350079-33349766 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 199 |
| Conread position: | 54-415 |
| Cow position: | chr11:3780806-3780436 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 250 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 47, 205 |
| Conread position: | 55-381 |
| Cow position: | chr11:65409534-65409200 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 86, 198 |
| Conread position: | 55-404 |
| Cow position: | chr11:2091975-2092310 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 139 |
| Conread position: | 65-386 |
| Cow position: | chr11:42016996-42016672 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 230 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 123, 27 |
| Conread position: | 69-387 |
| Cow position: | chr11:70609431-70609749 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 27, 66 |
| Conread position: | 70-351 |
| Cow position: | chr11:64090443-64090158 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 118, 74 |
| Conread position: | 73-376 |
| Cow position: | chr11:35684853-35684544 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 223 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 102, 177 |
| Conread position: | 80-349 |
| Cow position: | chr11:81614976-81614713 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 223, 61 |
| Conread position: | 96-336 |
| Cow position: | chr11:73924890-73924653 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 92, 146 |
| Conread position: | 105-382 |
| Cow position: | chr11:30120985-30120709 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 77, 58 |
| Conread position: | 110-329 |
| Cow position: | chr11:60302275-60302059 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 79, 139 |
| Conread position: | 115-333 |
| Cow position: | chr11:35238516-35238738 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 73, 134 |
| Conread position: | 115-364 |
| Cow position: | chr11:32595154-32595407 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 73, 134 |
| Conread position: | 130-383 |
| Cow position: | chr11:1485658-1485399 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 58, 119 |
| Conread position: | 130-386 |
| Cow position: | chr11:87155215-87155481 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 44, 78 |
| Conread position: | 136-351 |
| Cow position: | chr11:24601674-24601899 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 5, 118 |
| Conread position: | 138-337 |
| Cow position: | chr11:8988519-8988319 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 50, 105 |
| Conread position: | 141-381 |
| Cow position: | chr11:25165159-25165397 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 47, 39 |
| Conread position: | 141-387 |
| Cow position: | chr11:58103061-58102814 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 48, 108 |
| Conread position: | 142-371 |
| Cow position: | chr11:67804465-67804698 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 12, 38 |
| Conread position: | 143-381 |
| Cow position: | chr11:37347191-37347435 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 45, 24 |
| Conread position: | 148-342 |
| Cow position: | chr11:3282779-3282963 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 151, 37 |
| Conread position: | 152-368 |
| Cow position: | chr11:55052597-55052821 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 26, 157 |
| Conread position: | 154-371 |
| Cow position: | chr11:62155357-62155573 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 104, 29 |
| Conread position: | 159-378 |
| Cow position: | chr11:24937394-24937616 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 29, 20 |
| Conread position: | 187-371 |
| Cow position: | chr11:47899037-47899225 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 120, 110 |
| Conread position: | 189-390 |
| Cow position: | chr11:2925529-2925326 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 21, 60 |
Show alignments to all cow chromosomes.