Cow genome map
| Conread name: | rcki26_b12.y1 |
| Conread position: | 31-364 |
| Cow position: | chr12:40910708-40910373 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 235 |
| Conread position: | 33-359 |
| Cow position: | chr12:31328492-31328164 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 158, 130 |
| Conread position: | 33-359 |
| Cow position: | chr12:42061267-42061596 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 158, 80 |
| Conread position: | 34-312 |
| Cow position: | chr12:27055193-27055472 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 42, 176 |
| Conread position: | 34-313 |
| Cow position: | chr12:30605556-30605289 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 154, 62 |
| Conread position: | 34-329 |
| Cow position: | chr12:4593682-4593983 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 110, 120 |
| Conread position: | 34-363 |
| Cow position: | chr12:7977640-7977952 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 238 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 54, 69 |
| Conread position: | 34-380 |
| Cow position: | chr12:3950748-3950412 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 154, 98 |
| Conread position: | 34-388 |
| Cow position: | chr12:3578871-3579228 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 248 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 113, 89 |
| Conread position: | 34-390 |
| Cow position: | chr12:18421339-18420978 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 276 |
| Conread position: | 34-393 |
| Cow position: | chr12:6719911-6720271 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 109, 77 |
| Conread position: | 35-298 |
| Cow position: | chr12:45555829-45555569 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 167, 112 |
| Conread position: | 35-364 |
| Cow position: | chr12:36501359-36501028 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 236 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 260, 121 |
| Conread position: | 35-371 |
| Cow position: | chr12:11582994-11583320 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 117 |
| Conread position: | 35-371 |
| Cow position: | chr12:30578871-30578529 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 152, 214 |
| Conread position: | 35-382 |
| Cow position: | chr12:29969167-29969514 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 234 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 223, 155 |
| Conread position: | 35-386 |
| Cow position: | chr12:9142982-9143328 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 29 |
| Conread position: | 40-300 |
| Cow position: | chr12:19420338-19420086 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 196 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 148, 44 |
| Conread position: | 40-363 |
| Cow position: | chr12:6240900-6241228 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 211 |
| Conread position: | 40-384 |
| Cow position: | chr12:39486026-39486366 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 57 |
| Conread position: | 40-387 |
| Cow position: | chr12:47928809-47929153 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 244 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 62, 69 |
| Conread position: | 43-371 |
| Cow position: | chr12:20326371-20326699 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 63 |
| Conread position: | 43-381 |
| Cow position: | chr12:45814668-45814321 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 136 |
| Conread position: | 44-371 |
| Cow position: | chr12:27803447-27803128 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 147, 92 |
| Conread position: | 49-350 |
| Cow position: | chr12:24046334-24046028 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 207, 199 |
| Conread position: | 60-390 |
| Cow position: | chr12:17000875-17001207 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 235 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 128, 83 |
| Conread position: | 80-314 |
| Cow position: | chr12:31060346-31060112 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 106, 13 |
| Conread position: | 80-364 |
| Cow position: | chr12:41580750-41581036 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 178, 99 |
| Conread position: | 88-421 |
| Cow position: | chr12:18937030-18937374 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 246 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 99, 26 |
| Conread position: | 97-332 |
| Cow position: | chr12:12976536-12976295 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 90, 158 |
| Conread position: | 123-350 |
| Cow position: | chr12:44905313-44905547 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 65, 56 |
| Conread position: | 130-381 |
| Cow position: | chr12:11056559-11056809 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 57, 112 |
| Conread position: | 132-311 |
| Cow position: | chr12:35771348-35771167 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 132-387 |
| Cow position: | chr12:26782566-26782824 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 56, 117 |
| Conread position: | 136-385 |
| Cow position: | chr12:30805543-30805793 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 5, 123 |
| Conread position: | 139-333 |
| Cow position: | chr12:3076931-3076733 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 49, 110 |
| Conread position: | 141-377 |
| Cow position: | chr12:30590471-30590698 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 46, 38 |
| Conread position: | 141-387 |
| Cow position: | chr12:3055828-3056073 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 11, 111 |
| Conread position: | 144-350 |
| Cow position: | chr12:3510262-3510471 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 114, 37 |
| Conread position: | 147-337 |
| Cow position: | chr12:40307396-40307587 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 41, 102 |
| Conread position: | 148-381 |
| Cow position: | chr12:32169237-32169474 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 32, 15 |
| Conread position: | 151-350 |
| Cow position: | chr12:25455818-25456023 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 39, 99 |
| Conread position: | 160-337 |
| Cow position: | chr12:23154753-23154573 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 28, 19 |
| Conread position: | 163-383 |
| Cow position: | chr12:18388566-18388351 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 24, 86 |
| Conread position: | 187-387 |
| Cow position: | chr12:17702492-17702286 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 71, 61 |
| Conread position: | 208-387 |
| Cow position: | chr12:24211178-24211353 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 50, 38 |
Show alignments to all cow chromosomes.