Cow genome map
| Conread name: | rcki26_b12.y1 |
| Conread position: | 24-396 |
| Cow position: | chr13:55371794-55372165 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 257 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 167, 17 |
| Conread position: | 29-314 |
| Cow position: | chr13:41360114-41359833 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 134, 74 |
| Conread position: | 33-316 |
| Cow position: | chr13:30794181-30793897 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 206 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 160, 99 |
| Conread position: | 34-300 |
| Cow position: | chr13:24695723-24695461 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 159, 36 |
| Conread position: | 34-300 |
| Cow position: | chr13:25453530-25453263 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 190 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 154, 216 |
| Conread position: | 34-354 |
| Cow position: | chr13:40943602-40943283 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 24 |
| Conread position: | 34-360 |
| Cow position: | chr13:12977919-12977599 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 236 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 154, 100 |
| Conread position: | 34-364 |
| Cow position: | chr13:49805327-49804999 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 9 |
| Conread position: | 34-366 |
| Cow position: | chr13:51941089-51940764 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 240 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 157, 146 |
| Conread position: | 34-368 |
| Cow position: | chr13:17820902-17821243 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 249 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 154, 14 |
| Conread position: | 34-370 |
| Cow position: | chr13:27027418-27027751 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 245 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 224, 15 |
| Conread position: | 34-377 |
| Cow position: | chr13:53566943-53566611 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 246 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 154, 7 |
| Conread position: | 34-386 |
| Cow position: | chr13:34282040-34281682 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 249 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 154, 215 |
| Conread position: | 34-387 |
| Cow position: | chr13:56686791-56686439 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 208 |
| Conread position: | 34-390 |
| Cow position: | chr13:10928633-10928990 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 242 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 156, 100 |
| Conread position: | 35-371 |
| Cow position: | chr13:21276215-21275879 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 215 |
| Conread position: | 35-380 |
| Cow position: | chr13:60690360-60690715 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 131 |
| Conread position: | 35-383 |
| Cow position: | chr13:6945732-6945376 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 156, 215 |
| Conread position: | 35-488 |
| Cow position: | chr13:3003803-3003338 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 99 |
| Conread position: | 40-329 |
| Cow position: | chr13:13261369-13261072 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 40-371 |
| Cow position: | chr13:61170370-61170699 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 242 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 148, 107 |
| Conread position: | 40-382 |
| Cow position: | chr13:17800428-17800083 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 88, 69 |
| Conread position: | 43-319 |
| Cow position: | chr13:21988754-21989028 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 192 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 145, 91 |
| Conread position: | 51-386 |
| Cow position: | chr13:13266144-13265813 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 128 |
| Conread position: | 55-387 |
| Cow position: | chr13:12448649-12448989 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 242 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 97, 126 |
| Conread position: | 58-383 |
| Cow position: | chr13:33517572-33517914 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 62, 199 |
| Conread position: | 64-300 |
| Cow position: | chr13:4208488-4208721 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 194, 67 |
| Conread position: | 65-300 |
| Cow position: | chr13:15920802-15920568 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 126, 66 |
| Conread position: | 80-371 |
| Cow position: | chr13:27524948-27525243 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 99 |
| Conread position: | 80-387 |
| Cow position: | chr13:37382125-37381807 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 81-388 |
| Cow position: | chr13:15172096-15172408 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 223 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 108, 66 |
| Conread position: | 82-312 |
| Cow position: | chr13:35853040-35853265 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 105, 73 |
| Conread position: | 82-335 |
| Cow position: | chr13:56148852-56148598 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 61, 98 |
| Conread position: | 82-335 |
| Cow position: | chr13:56160115-56160369 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 61, 98 |
| Conread position: | 84-333 |
| Cow position: | chr13:13306412-13306159 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 104, 19 |
| Conread position: | 84-376 |
| Cow position: | chr13:20813973-20814263 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 220 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 104, 50 |
| Conread position: | 84-376 |
| Cow position: | chr13:20816620-20816330 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 220 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 104, 50 |
| Conread position: | 88-352 |
| Cow position: | chr13:14927543-14927276 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 201 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 100, 75 |
| Conread position: | 90-339 |
| Cow position: | chr13:15740367-15740119 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 166, 44 |
| Conread position: | 90-386 |
| Cow position: | chr13:32283423-32283134 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 98, 26 |
| Conread position: | 96-388 |
| Cow position: | chr13:25817811-25817533 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 95, 146 |
| Conread position: | 128-364 |
| Cow position: | chr13:18166996-18166762 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 60, 121 |
| Conread position: | 141-367 |
| Cow position: | chr13:21210115-21209886 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 24, 18 |
| Conread position: | 141-371 |
| Cow position: | chr13:26261541-26261777 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 46, 108 |
| Conread position: | 141-371 |
| Cow position: | chr13:38012616-38012379 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 10, 110 |
| Conread position: | 144-390 |
| Cow position: | chr13:24586298-24586045 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 7, 157 |
| Conread position: | 147-371 |
| Cow position: | chr13:8201238-8201461 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 31, 103 |
| Conread position: | 148-387 |
| Cow position: | chr13:45022962-45023205 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 41, 23 |
| Conread position: | 149-400 |
| Cow position: | chr13:54331264-54331010 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 38, 100 |
| Conread position: | 150-376 |
| Cow position: | chr13:44323147-44322921 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 30, 100 |
| Conread position: | 151-382 |
| Cow position: | chr13:24376733-24376505 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 37, 98 |
| Conread position: | 151-383 |
| Cow position: | chr13:20705960-20706197 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 37, 30 |
| Conread position: | 151-393 |
| Cow position: | chr13:55673962-55674207 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 37, 98 |
| Conread position: | 154-377 |
| Cow position: | chr13:7076496-7076274 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 35, 96 |
| Conread position: | 156-367 |
| Cow position: | chr13:42200856-42200645 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 35, 23 |
| Conread position: | 160-386 |
| Cow position: | chr13:24369819-24369588 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 29, 90 |
| Conread position: | 173-371 |
| Cow position: | chr13:54344997-54344792 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 15, 77 |
| Conread position: | 187-329 |
| Cow position: | chr13:33054189-33054328 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 71, 17 |
| Conread position: | 187-361 |
| Cow position: | chr13:51014974-51015155 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 79, 61 |
Show alignments to all cow chromosomes.