Cow genome map
| Conread name: | rcki26_b12.y1 |
| Conread position: | 2-368 |
| Cow position: | chr15:43626951-43626595 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 29 |
| Conread position: | 32-359 |
| Cow position: | chr15:7578661-7578993 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 231 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 161, 147 |
| Conread position: | 33-300 |
| Cow position: | chr15:4642704-4642972 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 158, 216 |
| Conread position: | 34-300 |
| Cow position: | chr15:23798058-23798323 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 155, 108 |
| Conread position: | 34-329 |
| Cow position: | chr15:24821914-24822207 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 55, 152 |
| Conread position: | 34-329 |
| Cow position: | chr15:38898885-38898592 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 153, 73 |
| Conread position: | 34-333 |
| Cow position: | chr15:41087399-41087698 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 145 |
| Conread position: | 34-339 |
| Cow position: | chr15:13669441-13669741 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 71 |
| Conread position: | 34-349 |
| Cow position: | chr15:33976229-33976539 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 207 |
| Conread position: | 34-361 |
| Cow position: | chr15:9062112-9062460 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 101, 233 |
| Conread position: | 34-371 |
| Cow position: | chr15:794554-794889 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 237 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 157, 100 |
| Conread position: | 34-371 |
| Cow position: | chr15:29792462-29792784 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 229 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 154, 95 |
| Conread position: | 34-376 |
| Cow position: | chr15:30047072-30047421 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 215 |
| Conread position: | 34-377 |
| Cow position: | chr15:5234541-5234882 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 145 |
| Conread position: | 34-377 |
| Cow position: | chr15:40797970-40798312 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 55, 77 |
| Conread position: | 34-383 |
| Cow position: | chr15:6970441-6970101 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 41 |
| Conread position: | 34-383 |
| Cow position: | chr15:20370008-20370344 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 273, 73 |
| Conread position: | 34-386 |
| Cow position: | chr15:1329642-1329992 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 157, 108 |
| Conread position: | 35-294 |
| Cow position: | chr15:37716476-37716718 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 223, 69 |
| Conread position: | 35-305 |
| Cow position: | chr15:12359717-12359442 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 60, 37 |
| Conread position: | 35-307 |
| Cow position: | chr15:16741573-16741847 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 145, 216 |
| Conread position: | 35-362 |
| Cow position: | chr15:1082924-1083241 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 206, 99 |
| Conread position: | 35-362 |
| Cow position: | chr15:1128445-1128129 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 229 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 206, 95 |
| Conread position: | 35-362 |
| Cow position: | chr15:7430445-7430111 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 113 |
| Conread position: | 35-370 |
| Cow position: | chr15:4138593-4138258 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 236 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 153, 65 |
| Conread position: | 35-371 |
| Cow position: | chr15:20533987-20534318 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 120 |
| Conread position: | 35-382 |
| Cow position: | chr15:15881383-15881043 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 19 |
| Conread position: | 35-382 |
| Cow position: | chr15:18720777-18720424 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 240 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 155, 214 |
| Conread position: | 36-337 |
| Cow position: | chr15:14505889-14505587 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 190 |
| Conread position: | 40-381 |
| Cow position: | chr15:22532692-22532354 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 246 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 24, 38 |
| Conread position: | 40-383 |
| Cow position: | chr15:41583366-41583023 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 245 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 42, 58 |
| Conread position: | 44-380 |
| Cow position: | chr15:23703218-23702891 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 144, 76 |
| Conread position: | 44-380 |
| Cow position: | chr15:25208313-25208646 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 79 |
| Conread position: | 48-382 |
| Cow position: | chr15:20486757-20487091 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 245 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 48, 202 |
| Conread position: | 51-337 |
| Cow position: | chr15:16543017-16543294 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 196 |
| Conread position: | 51-380 |
| Cow position: | chr15:26896274-26896591 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 137, 90 |
| Conread position: | 54-383 |
| Cow position: | chr15:22751893-22751562 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 242 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 6, 77 |
| Conread position: | 55-336 |
| Cow position: | chr15:18284685-18284401 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 88, 125 |
| Conread position: | 55-361 |
| Cow position: | chr15:25584637-25584953 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 203 |
| Conread position: | 80-337 |
| Cow position: | chr15:40999634-40999907 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 42, 47 |
| Conread position: | 81-328 |
| Cow position: | chr15:20267057-20266808 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 112, 129 |
| Conread position: | 84-361 |
| Cow position: | chr15:53102002-53101723 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 198 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 182, 101 |
| Conread position: | 87-359 |
| Cow position: | chr15:19733773-19733499 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 106, 77 |
| Conread position: | 92-321 |
| Cow position: | chr15:10450499-10450724 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 96, 78 |
| Conread position: | 125-363 |
| Cow position: | chr15:17084583-17084349 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 63, 34 |
| Conread position: | 129-316 |
| Cow position: | chr15:15846202-15846014 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 64, 123 |
| Conread position: | 141-333 |
| Cow position: | chr15:33303690-33303496 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 47, 76 |
| Conread position: | 148-362 |
| Cow position: | chr15:17100366-17100576 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 159, 37 |
| Conread position: | 148-363 |
| Cow position: | chr15:14020821-14020606 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 40, 69 |
| Conread position: | 148-364 |
| Cow position: | chr15:38883507-38883284 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 7, 102 |
| Conread position: | 149-371 |
| Cow position: | chr15:35642369-35642144 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 39, 93 |
| Conread position: | 151-362 |
| Cow position: | chr15:39406081-39405872 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 37, 28 |
| Conread position: | 160-371 |
| Cow position: | chr15:31857930-31857714 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 28, 89 |
| Conread position: | 163-371 |
| Cow position: | chr15:39599775-39599567 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 25, 86 |
| Conread position: | 173-386 |
| Cow position: | chr15:50322920-50322705 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 15, 76 |
| Conread position: | 187-313 |
| Cow position: | chr15:33243468-33243341 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 71, 62 |
Show alignments to all cow chromosomes.