Cow genome map
| Conread name: | rcki26_b12.y1 |
| Conread position: | 33-256 |
| Cow position: | chr18:52455206-52454986 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 152, 90 |
| Conread position: | 33-300 |
| Cow position: | chr18:28968350-28968083 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 155, 177 |
| Conread position: | 33-397 |
| Cow position: | chr18:27429038-27429403 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 249 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 158, 43 |
| Conread position: | 34-300 |
| Cow position: | chr18:32218661-32218398 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 159, 71 |
| Conread position: | 34-317 |
| Cow position: | chr18:9029219-9029498 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 214 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 156, 68 |
| Conread position: | 34-371 |
| Cow position: | chr18:13293102-13293442 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 234 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 99, 218 |
| Conread position: | 34-371 |
| Cow position: | chr18:20864579-20864920 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 114 |
| Conread position: | 34-371 |
| Cow position: | chr18:42747180-42747523 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 241 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 109, 154 |
| Conread position: | 34-381 |
| Cow position: | chr18:4707693-4707340 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 245 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 114, 21 |
| Conread position: | 34-386 |
| Cow position: | chr18:37002228-37002581 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 157, 57 |
| Conread position: | 35-348 |
| Cow position: | chr18:11866950-11867248 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 268, 50 |
| Conread position: | 35-351 |
| Cow position: | chr18:12118251-12117931 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 264 |
| Conread position: | 35-357 |
| Cow position: | chr18:3180014-3180337 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 126, 92 |
| Conread position: | 35-360 |
| Cow position: | chr18:2270909-2270585 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 144 |
| Conread position: | 35-361 |
| Cow position: | chr18:17004848-17005178 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 234 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 153, 88 |
| Conread position: | 35-364 |
| Cow position: | chr18:50082639-50082328 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 236 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 145, 35 |
| Conread position: | 35-371 |
| Cow position: | chr18:22121286-22120950 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 117 |
| Conread position: | 35-377 |
| Cow position: | chr18:23766826-23766477 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 112, 54 |
| Conread position: | 35-383 |
| Cow position: | chr18:34527513-34527155 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 244 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 106, 79 |
| Conread position: | 35-383 |
| Cow position: | chr18:43563822-43564172 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 236 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 156, 123 |
| Conread position: | 35-387 |
| Cow position: | chr18:37023962-37023606 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 144 |
| Conread position: | 35-388 |
| Cow position: | chr18:11322183-11322541 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 243 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 153, 217 |
| Conread position: | 35-395 |
| Cow position: | chr18:11618076-11618428 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 247 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 264, 143 |
| Conread position: | 40-293 |
| Cow position: | chr18:51713110-51712856 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 185 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 148, 210 |
| Conread position: | 40-300 |
| Cow position: | chr18:7930541-7930287 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 208, 33 |
| Conread position: | 40-362 |
| Cow position: | chr18:51691869-51691542 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 148, 209 |
| Conread position: | 41-363 |
| Cow position: | chr18:39709490-39709812 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 208 |
| Conread position: | 47-376 |
| Cow position: | chr18:14586870-14586529 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 203 |
| Conread position: | 50-382 |
| Cow position: | chr18:3027756-3027419 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 232 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 139, 159 |
| Conread position: | 55-340 |
| Cow position: | chr18:32244408-32244122 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 77, 185 |
| Conread position: | 58-309 |
| Cow position: | chr18:30186292-30186050 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 92, 150 |
| Conread position: | 58-383 |
| Cow position: | chr18:4182569-4182245 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 129, 38 |
| Conread position: | 61-329 |
| Cow position: | chr18:11671430-11671698 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 6 |
| Conread position: | 66-300 |
| Cow position: | chr18:2849636-2849401 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 123, 198 |
| Conread position: | 67-367 |
| Cow position: | chr18:16227185-16227489 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 82, 146 |
| Conread position: | 69-371 |
| Cow position: | chr18:10954110-10954409 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 118, 11 |
| Conread position: | 70-390 |
| Cow position: | chr18:29058863-29058545 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 226 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 187, 64 |
| Conread position: | 73-351 |
| Cow position: | chr18:48407422-48407702 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 14 |
| Conread position: | 73-387 |
| Cow position: | chr18:10575744-10576050 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 110 |
| Conread position: | 113-333 |
| Cow position: | chr18:52637862-52637632 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 32, 142 |
| Conread position: | 114-368 |
| Cow position: | chr18:9365585-9365844 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 74, 135 |
| Conread position: | 120-359 |
| Cow position: | chr18:6275495-6275738 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 67, 129 |
| Conread position: | 128-305 |
| Cow position: | chr18:44484071-44483895 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 60, 67 |
| Conread position: | 129-361 |
| Cow position: | chr18:4625589-4625817 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 137, 8 |
| Conread position: | 137-329 |
| Cow position: | chr18:46727289-46727485 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 38, 115 |
| Conread position: | 144-371 |
| Cow position: | chr18:13359765-13359995 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 46, 64 |
| Conread position: | 148-331 |
| Cow position: | chr18:47868162-47868347 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 40, 101 |
| Conread position: | 148-332 |
| Cow position: | chr18:3422427-3422608 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 40, 91 |
| Conread position: | 149-364 |
| Cow position: | chr18:20271312-20271096 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 39, 100 |
| Conread position: | 151-381 |
| Cow position: | chr18:42479870-42479648 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 104, 28 |
| Conread position: | 155-329 |
| Cow position: | chr18:56163301-56163472 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 33, 94 |
| Conread position: | 159-346 |
| Cow position: | chr18:18976802-18976993 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 29, 90 |
| Conread position: | 159-381 |
| Cow position: | chr18:56183656-56183879 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 29, 22 |
| Conread position: | 162-382 |
| Cow position: | chr18:11691689-11691469 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 96, 20 |
| Conread position: | 187-381 |
| Cow position: | chr18:48453440-48453629 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 71, 61 |
| Conread position: | 204-382 |
| Cow position: | chr18:1582519-1582336 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 54, 45 |
Show alignments to all cow chromosomes.