Cow genome map

Conread name: rcki26_b12.y1

Conread position: 3-294
Cow position: chr2:13033939-13033635 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 206
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 25, 258

Conread position: 14-387
Cow position: chr2:56102864-56102484 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 155

Conread position: 29-382
Cow position: chr2:65270072-65269718 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 5

Conread position: 31-162
Cow position: chr2:6911613-6911743 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 101
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 115, 0

Conread position: 31-400
Cow position: chr2:33447477-33447115 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 254
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 235, 9

Conread position: 32-364
Cow position: chr2:54789899-54790240 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 233
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 104, 8

Conread position: 33-329
Cow position: chr2:52485362-52485056 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 219
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 117, 8

Conread position: 33-339
Cow position: chr2:17444404-17444722 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 226
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 106, 231

Conread position: 33-397
Cow position: chr2:982402-982768 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 246
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 148, 174

Conread position: 34-295
Cow position: chr2:50352481-50352752 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 189
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 103, 7

Conread position: 34-300
Cow position: chr2:304723-304465 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 181
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 157, 89

Conread position: 34-300
Cow position: chr2:18062008-18061737 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 183
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 120, 219

Conread position: 34-307
Cow position: chr2:59593126-59592845 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 202
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 107, 221

Conread position: 34-321
Cow position: chr2:30910037-30910337 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 211
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 70, 227

Conread position: 34-356
Cow position: chr2:21356219-21355901 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 77

Conread position: 34-361
Cow position: chr2:35882702-35882379 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 101

Conread position: 34-364
Cow position: chr2:7524510-7524177 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 131

Conread position: 34-368
Cow position: chr2:69581882-69581544 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 131

Conread position: 34-371
Cow position: chr2:1303576-1303913 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 251
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 118, 76

Conread position: 34-371
Cow position: chr2:26439100-26438761 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 172

Conread position: 34-371
Cow position: chr2:38628542-38628871 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 240
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 151, 112

Conread position: 34-371
Cow position: chr2:61485262-61485589 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 235
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 139, 152

Conread position: 34-377
Cow position: chr2:24435396-24435054 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 233
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 159, 91

Conread position: 34-386
Cow position: chr2:47784000-47784344 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 146

Conread position: 34-387
Cow position: chr2:34571842-34571482 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 246
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 159, 145

Conread position: 34-387
Cow position: chr2:45913009-45912653 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 260
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 154, 57

Conread position: 34-394
Cow position: chr2:46357474-46357819 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 249
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 154, 100

Conread position: 35-363
Cow position: chr2:23493162-23493494 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 76

Conread position: 35-364
Cow position: chr2:14853951-14854272 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 27

Conread position: 35-364
Cow position: chr2:17940658-17940329 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 20

Conread position: 35-371
Cow position: chr2:778066-777723 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 238
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 49, 152

Conread position: 35-371
Cow position: chr2:47361893-47361555 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 230
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 234, 148

Conread position: 35-382
Cow position: chr2:42800679-42801018 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 18

Conread position: 35-386
Cow position: chr2:77467827-77467469 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 252
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 138, 106

Conread position: 35-387
Cow position: chr2:28819991-28820343 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 249
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 162, 124

Conread position: 35-387
Cow position: chr2:33262989-33262633 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 172

Conread position: 35-395
Cow position: chr2:48069773-48069410 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 102

Conread position: 40-340
Cow position: chr2:14825916-14826220 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 210

Conread position: 40-368
Cow position: chr2:81791945-81791610 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 231
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 102, 73

Conread position: 40-377
Cow position: chr2:2673157-2673496 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 144

Conread position: 40-382
Cow position: chr2:988323-988668 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 208

Conread position: 40-386
Cow position: chr2:39815648-39815305 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 88

Conread position: 40-387
Cow position: chr2:51824572-51824904 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 245
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 148, 92

Conread position: 41-368
Cow position: chr2:27600912-27600581 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 208

Conread position: 41-382
Cow position: chr2:32417237-32416885 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 245
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 100, 183

Conread position: 42-329
Cow position: chr2:75561471-75561758 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 139

Conread position: 44-330
Cow position: chr2:15815226-15815513 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 205

Conread position: 45-315
Cow position: chr2:86308249-86307983 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 185
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 143, 39

Conread position: 47-305
Cow position: chr2:35135616-35135868 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 186
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 141, 63

Conread position: 54-371
Cow position: chr2:46909776-46909474 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 217
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 204, 80

Conread position: 55-335
Cow position: chr2:8732160-8731888 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 192
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 245, 86

Conread position: 62-328
Cow position: chr2:39567021-39566757 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 187
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 204, 69

Conread position: 63-368
Cow position: chr2:45499542-45499241 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 175

Conread position: 68-355
Cow position: chr2:76969516-76969229 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 207
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 115, 31

Conread position: 80-387
Cow position: chr2:38965293-38965599 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 67

Conread position: 80-397
Cow position: chr2:7534107-7533781 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 227
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 67, 177

Conread position: 82-382
Cow position: chr2:63865657-63865352 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 204
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 109, 60

Conread position: 84-362
Cow position: chr2:81388367-81388645 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 15

Conread position: 84-380
Cow position: chr2:80242513-80242217 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 210
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 212, 100

Conread position: 87-382
Cow position: chr2:46201951-46202242 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 221
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 100, 48

Conread position: 94-350
Cow position: chr2:33497518-33497254 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 192
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 94, 155

Conread position: 105-383
Cow position: chr2:74260156-74260434 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 198
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 83, 74

Conread position: 107-333
Cow position: chr2:17800220-17800441 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 162
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 159, 78

Conread position: 115-376
Cow position: chr2:46231059-46230791 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 186
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 41, 19

Conread position: 129-362
Cow position: chr2:42607792-42608021 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 171
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 59, 83

Conread position: 132-307
Cow position: chr2:57939406-57939583 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 57, 117

Conread position: 132-387
Cow position: chr2:13582308-13582563 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 188
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 126, 75

Conread position: 136-382
Cow position: chr2:45619667-45619424 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 174
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 52, 113

Conread position: 136-397
Cow position: chr2:46244298-46244031 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 180
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 52, 113

Conread position: 141-364
Cow position: chr2:30816690-30816920 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 163
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 117, 67

Conread position: 141-366
Cow position: chr2:47138570-47138800 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 160
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 48, 71

Conread position: 141-386
Cow position: chr2:42927718-42927467 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 178
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 47, 108

Conread position: 144-397
Cow position: chr2:66615184-66614922 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 183
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 11, 106

Conread position: 145-364
Cow position: chr2:50580106-50580331 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 164
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 43, 34

Conread position: 147-362
Cow position: chr2:25283549-25283770 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 159
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 40, 102

Conread position: 147-362
Cow position: chr2:25285293-25285514 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 158
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 40, 102

Conread position: 147-369
Cow position: chr2:4223526-4223300 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 158
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 151, 103

Conread position: 150-370
Cow position: chr2:47072933-47073158 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 165
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 30, 71

Conread position: 152-377
Cow position: chr2:19287333-19287114 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 155
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 36, 90

Conread position: 156-364
Cow position: chr2:15812407-15812610 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 146
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 110, 29

Conread position: 159-386
Cow position: chr2:48361320-48361552 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 160
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 99, 23

Conread position: 159-393
Cow position: chr2:24393938-24393704 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 164
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 28, 90

Conread position: 162-382
Cow position: chr2:25964731-25964513 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 155
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 26, 80

Conread position: 162-390
Cow position: chr2:17967280-17967048 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 169
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 18, 88

Conread position: 163-383
Cow position: chr2:39489536-39489755 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 164
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 8, 89

Conread position: 174-368
Cow position: chr2:1134628-1134428 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 143
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 14, 75

Conread position: 187-397
Cow position: chr2:38362592-38362380 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 150
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 82, 61

Show alignments to all cow chromosomes.