Cow genome map
| Conread name: | rcki26_b12.y1 |
| Conread position: | 32-390 |
| Cow position: | chr21:393709-394065 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 245 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 158, 8 |
| Conread position: | 33-359 |
| Cow position: | chr21:43402302-43401974 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 218 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 154, 81 |
| Conread position: | 33-380 |
| Cow position: | chr21:4569810-4569454 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 131, 218 |
| Conread position: | 33-380 |
| Cow position: | chr21:32297814-32297473 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 146 |
| Conread position: | 33-397 |
| Cow position: | chr21:5021156-5021526 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 251 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 158, 216 |
| Conread position: | 33-397 |
| Cow position: | chr21:17144836-17145202 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 158, 216 |
| Conread position: | 34-337 |
| Cow position: | chr21:28993937-28993630 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 157, 215 |
| Conread position: | 34-340 |
| Cow position: | chr21:38691882-38692179 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 127, 33 |
| Conread position: | 34-363 |
| Cow position: | chr21:20045078-20044749 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 240 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 261, 95 |
| Conread position: | 34-364 |
| Cow position: | chr21:21480490-21480163 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 149 |
| Conread position: | 34-371 |
| Cow position: | chr21:23984594-23984254 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 7 |
| Conread position: | 34-382 |
| Cow position: | chr21:33983121-33982768 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 216 |
| Conread position: | 34-387 |
| Cow position: | chr21:37479648-37479997 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 246 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 154, 100 |
| Conread position: | 34-397 |
| Cow position: | chr21:2495482-2495120 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 157, 95 |
| Conread position: | 35-319 |
| Cow position: | chr21:28029087-28029372 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 214 |
| Conread position: | 35-327 |
| Cow position: | chr21:17410965-17410677 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 223, 88 |
| Conread position: | 35-328 |
| Cow position: | chr21:7717097-7716804 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 23 |
| Conread position: | 35-348 |
| Cow position: | chr21:6765012-6764692 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 160 |
| Conread position: | 35-371 |
| Cow position: | chr21:18494668-18494996 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 236 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 223, 77 |
| Conread position: | 35-382 |
| Cow position: | chr21:38900471-38900814 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 248 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 153, 43 |
| Conread position: | 35-382 |
| Cow position: | chr21:41974689-41974337 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 214 |
| Conread position: | 35-384 |
| Cow position: | chr21:44671443-44671791 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 214 |
| Conread position: | 35-386 |
| Cow position: | chr21:4998795-4998445 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 150 |
| Conread position: | 35-386 |
| Cow position: | chr21:20262644-20262291 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 207 |
| Conread position: | 35-386 |
| Cow position: | chr21:34391276-34390933 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 70 |
| Conread position: | 35-386 |
| Cow position: | chr21:47760467-47760811 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 150 |
| Conread position: | 35-390 |
| Cow position: | chr21:30990578-30990232 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 144 |
| Conread position: | 35-394 |
| Cow position: | chr21:42905679-42905326 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 244 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 153, 20 |
| Conread position: | 40-307 |
| Cow position: | chr21:8289944-8289677 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 151, 59 |
| Conread position: | 40-350 |
| Cow position: | chr21:24887692-24888015 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 81, 65 |
| Conread position: | 40-380 |
| Cow position: | chr21:42384203-42384546 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 94 |
| Conread position: | 40-383 |
| Cow position: | chr21:9415938-9416287 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 56 |
| Conread position: | 42-388 |
| Cow position: | chr21:46263874-46264215 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 85 |
| Conread position: | 44-371 |
| Cow position: | chr21:39401299-39401621 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 137 |
| Conread position: | 45-360 |
| Cow position: | chr21:11707050-11706729 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 86 |
| Conread position: | 45-387 |
| Cow position: | chr21:23586563-23586923 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 251 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 98, 51 |
| Conread position: | 50-330 |
| Cow position: | chr21:20109127-20108842 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 189 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 64, 36 |
| Conread position: | 50-347 |
| Cow position: | chr21:13718155-13717854 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 64, 164 |
| Conread position: | 50-347 |
| Cow position: | chr21:17709533-17709831 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 138, 97 |
| Conread position: | 58-295 |
| Cow position: | chr21:30231987-30231751 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 118, 76 |
| Conread position: | 58-371 |
| Cow position: | chr21:36297192-36297517 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 232 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 130, 121 |
| Conread position: | 62-303 |
| Cow position: | chr21:21600943-21600701 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 131, 207 |
| Conread position: | 80-307 |
| Cow position: | chr21:14464300-14464538 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 44, 180 |
| Conread position: | 81-382 |
| Cow position: | chr21:33350481-33350778 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 53 |
| Conread position: | 82-349 |
| Cow position: | chr21:18935503-18935764 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 166, 34 |
| Conread position: | 84-300 |
| Cow position: | chr21:17643224-17643015 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 150, 63 |
| Conread position: | 86-337 |
| Cow position: | chr21:39403797-39403545 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 185 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 215, 162 |
| Conread position: | 94-383 |
| Cow position: | chr21:23322332-23322039 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 164, 90 |
| Conread position: | 96-397 |
| Cow position: | chr21:4267599-4267296 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 95, 153 |
| Conread position: | 105-362 |
| Cow position: | chr21:5636961-5636700 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 83, 151 |
| Conread position: | 105-383 |
| Cow position: | chr21:13410063-13409786 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 83, 144 |
| Conread position: | 110-300 |
| Cow position: | chr21:28919858-28919670 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 70, 31 |
| Conread position: | 119-295 |
| Cow position: | chr21:11877158-11877330 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 139, 66 |
| Conread position: | 140-371 |
| Cow position: | chr21:19258621-19258851 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 48, 109 |
| Conread position: | 141-329 |
| Cow position: | chr21:6051302-6051488 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 47, 108 |
| Conread position: | 141-394 |
| Cow position: | chr21:29484780-29485027 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 47, 38 |
| Conread position: | 142-349 |
| Cow position: | chr21:41579548-41579761 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 116, 38 |
| Conread position: | 148-362 |
| Cow position: | chr21:18828506-18828289 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 42, 31 |
| Conread position: | 148-383 |
| Cow position: | chr21:29002359-29002116 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 42, 150 |
| Conread position: | 159-364 |
| Cow position: | chr21:40589669-40589465 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 30, 90 |
Show alignments to all cow chromosomes.