Cow genome map
| Conread name: | rcki26_b12.y1 |
| Conread position: | 22-309 |
| Cow position: | chr3:44535171-44534894 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 19, 108 |
| Conread position: | 31-371 |
| Cow position: | chr3:49119432-49119086 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 13 |
| Conread position: | 31-413 |
| Cow position: | chr3:73211583-73211967 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 257 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 160, 336 |
| Conread position: | 33-300 |
| Cow position: | chr3:48605296-48605564 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 32, 264 |
| Conread position: | 33-300 |
| Cow position: | chr3:49416082-49415815 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 154, 216 |
| Conread position: | 33-359 |
| Cow position: | chr3:21100572-21100901 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 158, 107 |
| Conread position: | 33-359 |
| Cow position: | chr3:45026177-45025846 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 158, 111 |
| Conread position: | 33-387 |
| Cow position: | chr3:9843179-9843541 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 253 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 111, 152 |
| Conread position: | 34-298 |
| Cow position: | chr3:15655542-15655285 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 156, 113 |
| Conread position: | 34-298 |
| Cow position: | chr3:40101069-40100808 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 159, 74 |
| Conread position: | 34-300 |
| Cow position: | chr3:68302930-68303197 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 215 |
| Conread position: | 34-316 |
| Cow position: | chr3:34526042-34525758 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 159, 144 |
| Conread position: | 34-329 |
| Cow position: | chr3:77496419-77496715 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 91 |
| Conread position: | 34-333 |
| Cow position: | chr3:7338175-7337870 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 223 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 141, 83 |
| Conread position: | 34-368 |
| Cow position: | chr3:74088559-74088233 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 125 |
| Conread position: | 34-380 |
| Cow position: | chr3:20663936-20663584 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 215 |
| Conread position: | 34-381 |
| Cow position: | chr3:15387807-15388163 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 248 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 116, 182 |
| Conread position: | 34-382 |
| Cow position: | chr3:5851325-5850980 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 234 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 273, 263 |
| Conread position: | 34-383 |
| Cow position: | chr3:58540937-58540575 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 236 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 63, 159 |
| Conread position: | 34-387 |
| Cow position: | chr3:36570438-36570091 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 30, 57 |
| Conread position: | 34-387 |
| Cow position: | chr3:70566136-70565784 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 213 |
| Conread position: | 34-415 |
| Cow position: | chr3:17937249-17936856 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 269 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 122, 227 |
| Conread position: | 35-317 |
| Cow position: | chr3:4457471-4457187 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 56 |
| Conread position: | 35-350 |
| Cow position: | chr3:6265109-6265431 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 215 |
| Conread position: | 35-351 |
| Cow position: | chr3:62827010-62826699 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 228 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 153, 84 |
| Conread position: | 35-364 |
| Cow position: | chr3:72675691-72676025 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 60 |
| Conread position: | 35-371 |
| Cow position: | chr3:13899850-13899506 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 214 |
| Conread position: | 35-371 |
| Cow position: | chr3:73708663-73708987 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 244 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 272, 20 |
| Conread position: | 35-371 |
| Cow position: | chr3:79592285-79591942 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 99 |
| Conread position: | 35-387 |
| Cow position: | chr3:48269466-48269819 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 214 |
| Conread position: | 35-387 |
| Cow position: | chr3:80082214-80081867 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 241 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 295, 206 |
| Conread position: | 38-388 |
| Cow position: | chr3:31500961-31501307 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 82 |
| Conread position: | 40-364 |
| Cow position: | chr3:8716855-8717185 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 139 |
| Conread position: | 40-386 |
| Cow position: | chr3:25690401-25690746 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 247 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 148, 83 |
| Conread position: | 42-299 |
| Cow position: | chr3:60892240-60892496 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 14, 129 |
| Conread position: | 42-359 |
| Cow position: | chr3:59865258-59865580 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 226, 206 |
| Conread position: | 44-364 |
| Cow position: | chr3:31298545-31298220 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 232 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 144, 96 |
| Conread position: | 46-329 |
| Cow position: | chr3:58158838-58158569 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 141, 75 |
| Conread position: | 47-368 |
| Cow position: | chr3:46350262-46350607 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 71, 214 |
| Conread position: | 48-333 |
| Cow position: | chr3:53593083-53592796 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 84 |
| Conread position: | 50-367 |
| Cow position: | chr3:74233828-74234126 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 208, 91 |
| Conread position: | 52-386 |
| Cow position: | chr3:61191297-61190970 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 137, 181 |
| Conread position: | 55-364 |
| Cow position: | chr3:18066757-18067068 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 203 |
| Conread position: | 55-364 |
| Cow position: | chr3:49461314-49460997 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 124 |
| Conread position: | 80-375 |
| Cow position: | chr3:57763855-57764171 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 56, 185 |
| Conread position: | 84-367 |
| Cow position: | chr3:70895699-70895982 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 204 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 104, 19 |
| Conread position: | 88-349 |
| Cow position: | chr3:61467273-61467525 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 168, 50 |
| Conread position: | 92-361 |
| Cow position: | chr3:61857156-61857433 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 201 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 96, 157 |
| Conread position: | 98-368 |
| Cow position: | chr3:78076858-78077126 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 90, 36 |
| Conread position: | 105-368 |
| Cow position: | chr3:83920874-83921134 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 84, 29 |
| Conread position: | 114-363 |
| Cow position: | chr3:78200949-78201201 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 189 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 74, 135 |
| Conread position: | 114-365 |
| Cow position: | chr3:57754798-57754544 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 77, 51 |
| Conread position: | 114-371 |
| Cow position: | chr3:67704218-67704482 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 36, 142 |
| Conread position: | 120-382 |
| Cow position: | chr3:53790856-53790586 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 60, 76 |
| Conread position: | 126-381 |
| Cow position: | chr3:27274233-27274479 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 14, 68 |
| Conread position: | 126-390 |
| Cow position: | chr3:12286930-12287188 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 65, 10 |
| Conread position: | 127-364 |
| Cow position: | chr3:83934209-83934443 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 47, 72 |
| Conread position: | 128-377 |
| Cow position: | chr3:2518841-2518587 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 59, 121 |
| Conread position: | 132-363 |
| Cow position: | chr3:30463466-30463238 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 56, 117 |
| Conread position: | 136-383 |
| Cow position: | chr3:74533051-74533300 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 5, 114 |
| Conread position: | 138-329 |
| Cow position: | chr3:79148570-79148375 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 50, 111 |
| Conread position: | 141-357 |
| Cow position: | chr3:51609525-51609747 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 51, 108 |
| Conread position: | 141-367 |
| Cow position: | chr3:45534590-45534361 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 47, 40 |
| Conread position: | 141-380 |
| Cow position: | chr3:14602004-14601763 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 47, 38 |
| Conread position: | 141-380 |
| Cow position: | chr3:66885329-66885091 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 47, 106 |
| Conread position: | 141-380 |
| Cow position: | chr3:73759808-73759566 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 33, 11 |
| Conread position: | 142-363 |
| Cow position: | chr3:29812954-29813176 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 45, 37 |
| Conread position: | 148-329 |
| Cow position: | chr3:39970156-39969974 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 38, 101 |
| Conread position: | 148-367 |
| Cow position: | chr3:23944813-23945033 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 43, 102 |
| Conread position: | 148-371 |
| Cow position: | chr3:78946123-78945895 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 38, 63 |
| Conread position: | 148-381 |
| Cow position: | chr3:67744912-67744679 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 43, 102 |
| Conread position: | 151-368 |
| Cow position: | chr3:17456550-17456331 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 35, 98 |
| Conread position: | 151-386 |
| Cow position: | chr3:81277985-81277744 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 23, 99 |
| Conread position: | 154-336 |
| Cow position: | chr3:18607090-18607275 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 26, 99 |
| Conread position: | 154-371 |
| Cow position: | chr3:63861179-63860952 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 34, 95 |
| Conread position: | 159-383 |
| Cow position: | chr3:54945852-54946079 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 99, 89 |
| Conread position: | 163-371 |
| Cow position: | chr3:17451203-17451002 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 25, 86 |
| Conread position: | 167-364 |
| Cow position: | chr3:73394851-73395054 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 21, 83 |
| Conread position: | 187-394 |
| Cow position: | chr3:44932264-44932473 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 69, 61 |
| Conread position: | 208-384 |
| Cow position: | chr3:22900216-22900039 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 50, 40 |
Show alignments to all cow chromosomes.