Cow genome map
| Conread name: | rcki26_b12.y1 |
| Conread position: | 33-334 |
| Cow position: | chr4:62471685-62471989 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 216 |
| Conread position: | 34-295 |
| Cow position: | chr4:46477320-46477059 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 154, 107 |
| Conread position: | 34-329 |
| Cow position: | chr4:46176850-46176549 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 210 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 73, 220 |
| Conread position: | 34-337 |
| Cow position: | chr4:6653365-6653649 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 154, 21 |
| Conread position: | 34-339 |
| Cow position: | chr4:23655612-23655919 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 151 |
| Conread position: | 34-344 |
| Cow position: | chr4:26009064-26009381 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 215 |
| Conread position: | 34-361 |
| Cow position: | chr4:21058772-21058437 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 150 |
| Conread position: | 34-362 |
| Cow position: | chr4:962032-961714 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 107, 62 |
| Conread position: | 34-364 |
| Cow position: | chr4:10731838-10732172 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 65 |
| Conread position: | 34-371 |
| Cow position: | chr4:22138616-22138273 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 80 |
| Conread position: | 34-377 |
| Cow position: | chr4:4672715-4672369 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 113 |
| Conread position: | 34-381 |
| Cow position: | chr4:66112455-66112107 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 7 |
| Conread position: | 34-383 |
| Cow position: | chr4:24458481-24458137 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 147 |
| Conread position: | 34-387 |
| Cow position: | chr4:4185739-4186093 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 118, 107 |
| Conread position: | 34-387 |
| Cow position: | chr4:36892974-36893330 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 91 |
| Conread position: | 34-393 |
| Cow position: | chr4:19306874-19307237 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 145 |
| Conread position: | 34-393 |
| Cow position: | chr4:66173176-66172821 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 103 |
| Conread position: | 34-472 |
| Cow position: | chr4:27292342-27291902 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 270 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 22, 80 |
| Conread position: | 35-314 |
| Cow position: | chr4:53100428-53100704 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 204 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 151, 28 |
| Conread position: | 35-364 |
| Cow position: | chr4:23853824-23854139 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 240 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 100, 70 |
| Conread position: | 35-367 |
| Cow position: | chr4:58834780-58834454 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 155, 78 |
| Conread position: | 35-371 |
| Cow position: | chr4:43543115-43542780 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 215 |
| Conread position: | 35-376 |
| Cow position: | chr4:59871124-59871442 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 266, 105 |
| Conread position: | 35-383 |
| Cow position: | chr4:45644694-45644343 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 215 |
| Conread position: | 35-386 |
| Cow position: | chr4:19584323-19584687 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 216 |
| Conread position: | 35-387 |
| Cow position: | chr4:14470949-14470597 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 149 |
| Conread position: | 40-329 |
| Cow position: | chr4:65826241-65825942 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 208 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 106, 56 |
| Conread position: | 40-380 |
| Cow position: | chr4:19141919-19142251 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 239 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 148, 73 |
| Conread position: | 40-383 |
| Cow position: | chr4:21392172-21391845 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 148, 13 |
| Conread position: | 40-386 |
| Cow position: | chr4:13694044-13693702 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 243 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 140, 13 |
| Conread position: | 41-382 |
| Cow position: | chr4:3850182-3850519 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 82 |
| Conread position: | 42-359 |
| Cow position: | chr4:10136168-10136481 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 221 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 216, 139 |
| Conread position: | 44-387 |
| Cow position: | chr4:21532001-21531672 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 237 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 47, 59 |
| Conread position: | 54-364 |
| Cow position: | chr4:42232307-42232607 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 164, 11 |
| Conread position: | 55-381 |
| Cow position: | chr4:22743968-22744287 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 203, 74 |
| Conread position: | 55-382 |
| Cow position: | chr4:17112239-17111908 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 236 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 89, 188 |
| Conread position: | 70-387 |
| Cow position: | chr4:10916183-10915870 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 219 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 182, 114 |
| Conread position: | 73-387 |
| Cow position: | chr4:37470211-37470526 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 112, 62 |
| Conread position: | 78-363 |
| Cow position: | chr4:34208590-34208883 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 110, 133 |
| Conread position: | 89-394 |
| Cow position: | chr4:37915656-37915361 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 225 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 98, 80 |
| Conread position: | 104-360 |
| Cow position: | chr4:34310767-34310505 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 79, 145 |
| Conread position: | 114-501 |
| Cow position: | chr4:49424542-49424917 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 256 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 74, 30 |
| Conread position: | 117-329 |
| Cow position: | chr4:48182416-48182629 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 57, 90 |
| Conread position: | 119-315 |
| Cow position: | chr4:10703982-10703782 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 69, 130 |
| Conread position: | 124-311 |
| Cow position: | chr4:40056675-40056863 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 63, 125 |
| Conread position: | 126-361 |
| Cow position: | chr4:620444-620213 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 9, 35 |
| Conread position: | 127-361 |
| Cow position: | chr4:54468585-54468346 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 47, 123 |
| Conread position: | 136-381 |
| Cow position: | chr4:4321286-4321034 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 52, 113 |
| Conread position: | 138-329 |
| Cow position: | chr4:46550106-46550298 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 49, 111 |
| Conread position: | 141-371 |
| Cow position: | chr4:5999469-5999236 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 47, 64 |
| Conread position: | 141-393 |
| Cow position: | chr4:5461128-5460888 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 159, 38 |
| Conread position: | 142-351 |
| Cow position: | chr4:27529839-27530053 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 45, 107 |
| Conread position: | 144-303 |
| Cow position: | chr4:61969910-61969750 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 44, 106 |
| Conread position: | 144-379 |
| Cow position: | chr4:47348560-47348791 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 43, 65 |
| Conread position: | 148-368 |
| Cow position: | chr4:44073038-44072813 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 40, 101 |
| Conread position: | 148-381 |
| Cow position: | chr4:34337530-34337306 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 151, 31 |
| Conread position: | 148-387 |
| Cow position: | chr4:51739971-51739738 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 42, 102 |
| Conread position: | 151-376 |
| Cow position: | chr4:48235374-48235598 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 37, 98 |
| Conread position: | 151-382 |
| Cow position: | chr4:33612628-33612392 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 37, 98 |
| Conread position: | 153-300 |
| Cow position: | chr4:46385841-46385693 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 37, 96 |
| Conread position: | 155-331 |
| Cow position: | chr4:123462-123284 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 31, 94 |
| Conread position: | 155-371 |
| Cow position: | chr4:41867183-41867396 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 33, 94 |
| Conread position: | 159-300 |
| Cow position: | chr4:51630400-51630542 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 28, 90 |
| Conread position: | 159-339 |
| Cow position: | chr4:2536576-2536753 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 148, 58 |
| Conread position: | 162-356 |
| Cow position: | chr4:41292234-41292041 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 26, 87 |
| Conread position: | 185-361 |
| Cow position: | chr4:23911819-23911637 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 81, 23 |
| Conread position: | 187-390 |
| Cow position: | chr4:19463262-19463471 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 14, 63 |
Show alignments to all cow chromosomes.