Cow genome map
Conread name: | rcki26_b12.y1 |
Conread position: | 13-387 |
Cow position: | chr5:6044916-6045298 (view UCSC Genome Browser custom track) |
Alignm length: | 385 |
Alignm identity: | 268 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 163, 237 |
Conread position: | 22-371 |
Cow position: | chr5:48828785-48829145 (view UCSC Genome Browser custom track) |
Alignm length: | 363 |
Alignm identity: | 258 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 15, 235 |
Conread position: | 32-308 |
Cow position: | chr5:67212031-67212304 (view UCSC Genome Browser custom track) |
Alignm length: | 279 |
Alignm identity: | 197 |
Alignm E-value: | 8e-40 |
Alignm gaps (pig, cow): | 156, 10 |
Conread position: | 33-300 |
Cow position: | chr5:29969283-29969550 (view UCSC Genome Browser custom track) |
Alignm length: | 271 |
Alignm identity: | 186 |
Alignm E-value: | 1e-33 |
Alignm gaps (pig, cow): | 160, 146 |
Conread position: | 33-301 |
Cow position: | chr5:44369545-44369812 (view UCSC Genome Browser custom track) |
Alignm length: | 271 |
Alignm identity: | 186 |
Alignm E-value: | 4e-34 |
Alignm gaps (pig, cow): | 158, 27 |
Conread position: | 33-376 |
Cow position: | chr5:9099785-9099440 (view UCSC Genome Browser custom track) |
Alignm length: | 349 |
Alignm identity: | 234 |
Alignm E-value: | 8e-40 |
Alignm gaps (pig, cow): | 148, 158 |
Conread position: | 33-397 |
Cow position: | chr5:8178832-8179194 (view UCSC Genome Browser custom track) |
Alignm length: | 372 |
Alignm identity: | 249 |
Alignm E-value: | 6e-37 |
Alignm gaps (pig, cow): | 225, 154 |
Conread position: | 33-397 |
Cow position: | chr5:47750600-47750963 (view UCSC Genome Browser custom track) |
Alignm length: | 374 |
Alignm identity: | 247 |
Alignm E-value: | 1e-32 |
Alignm gaps (pig, cow): | 160, 101 |
Conread position: | 34-307 |
Cow position: | chr5:19969381-19969108 (view UCSC Genome Browser custom track) |
Alignm length: | 276 |
Alignm identity: | 195 |
Alignm E-value: | 3.00004e-41 |
Alignm gaps (pig, cow): | 154, 215 |
Conread position: | 34-327 |
Cow position: | chr5:1105209-1104923 (view UCSC Genome Browser custom track) |
Alignm length: | 299 |
Alignm identity: | 212 |
Alignm E-value: | 3e-39 |
Alignm gaps (pig, cow): | 154, 107 |
Conread position: | 34-329 |
Cow position: | chr5:47889064-47888766 (view UCSC Genome Browser custom track) |
Alignm length: | 300 |
Alignm identity: | 215 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 153, 215 |
Conread position: | 34-333 |
Cow position: | chr5:13691924-13691621 (view UCSC Genome Browser custom track) |
Alignm length: | 306 |
Alignm identity: | 224 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 154, 71 |
Conread position: | 34-334 |
Cow position: | chr5:15363544-15363842 (view UCSC Genome Browser custom track) |
Alignm length: | 304 |
Alignm identity: | 215 |
Alignm E-value: | 3.9937e-43 |
Alignm gaps (pig, cow): | 154, 108 |
Conread position: | 34-355 |
Cow position: | chr5:35826252-35826576 (view UCSC Genome Browser custom track) |
Alignm length: | 337 |
Alignm identity: | 235 |
Alignm E-value: | 1e-34 |
Alignm gaps (pig, cow): | 154, 57 |
Conread position: | 34-371 |
Cow position: | chr5:62172057-62172403 (view UCSC Genome Browser custom track) |
Alignm length: | 354 |
Alignm identity: | 241 |
Alignm E-value: | 5e-35 |
Alignm gaps (pig, cow): | 101, 225 |
Conread position: | 34-377 |
Cow position: | chr5:14550936-14550586 (view UCSC Genome Browser custom track) |
Alignm length: | 354 |
Alignm identity: | 256 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 59, 218 |
Conread position: | 34-380 |
Cow position: | chr5:36679795-36679437 (view UCSC Genome Browser custom track) |
Alignm length: | 360 |
Alignm identity: | 239 |
Alignm E-value: | 6e-37 |
Alignm gaps (pig, cow): | 98, 224 |
Conread position: | 34-381 |
Cow position: | chr5:47317317-47316970 (view UCSC Genome Browser custom track) |
Alignm length: | 354 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 297, 151 |
Conread position: | 34-381 |
Cow position: | chr5:50599717-50600052 (view UCSC Genome Browser custom track) |
Alignm length: | 352 |
Alignm identity: | 248 |
Alignm E-value: | 4.06377e-44 |
Alignm gaps (pig, cow): | 224, 144 |
Conread position: | 34-382 |
Cow position: | chr5:26467273-26467625 (view UCSC Genome Browser custom track) |
Alignm length: | 357 |
Alignm identity: | 248 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 224, 118 |
Conread position: | 34-382 |
Cow position: | chr5:29827704-29828049 (view UCSC Genome Browser custom track) |
Alignm length: | 355 |
Alignm identity: | 252 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 154, 208 |
Conread position: | 34-386 |
Cow position: | chr5:19470532-19470186 (view UCSC Genome Browser custom track) |
Alignm length: | 357 |
Alignm identity: | 251 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 224, 149 |
Conread position: | 34-386 |
Cow position: | chr5:47871400-47871036 (view UCSC Genome Browser custom track) |
Alignm length: | 367 |
Alignm identity: | 263 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 62, 121 |
Conread position: | 34-387 |
Cow position: | chr5:52165528-52165173 (view UCSC Genome Browser custom track) |
Alignm length: | 362 |
Alignm identity: | 246 |
Alignm E-value: | 9.99967e-42 |
Alignm gaps (pig, cow): | 108, 119 |
Conread position: | 35-329 |
Cow position: | chr5:39299180-39299475 (view UCSC Genome Browser custom track) |
Alignm length: | 298 |
Alignm identity: | 208 |
Alignm E-value: | 3.00018e-42 |
Alignm gaps (pig, cow): | 231, 216 |
Conread position: | 35-337 |
Cow position: | chr5:61030577-61030271 (view UCSC Genome Browser custom track) |
Alignm length: | 308 |
Alignm identity: | 215 |
Alignm E-value: | 9.94922e-44 |
Alignm gaps (pig, cow): | 159, 215 |
Conread position: | 35-363 |
Cow position: | chr5:55176544-55176871 (view UCSC Genome Browser custom track) |
Alignm length: | 336 |
Alignm identity: | 245 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 156, 117 |
Conread position: | 35-371 |
Cow position: | chr5:40357235-40356876 (view UCSC Genome Browser custom track) |
Alignm length: | 362 |
Alignm identity: | 240 |
Alignm E-value: | 8e-29 |
Alignm gaps (pig, cow): | 108, 202 |
Conread position: | 35-371 |
Cow position: | chr5:51151711-51151369 (view UCSC Genome Browser custom track) |
Alignm length: | 346 |
Alignm identity: | 235 |
Alignm E-value: | 8e-40 |
Alignm gaps (pig, cow): | 130, 145 |
Conread position: | 35-371 |
Cow position: | chr5:62107837-62107502 (view UCSC Genome Browser custom track) |
Alignm length: | 344 |
Alignm identity: | 230 |
Alignm E-value: | 2e-35 |
Alignm gaps (pig, cow): | 152, 51 |
Conread position: | 35-381 |
Cow position: | chr5:27015345-27015680 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 248 |
Alignm E-value: | 5.60519e-45 |
Alignm gaps (pig, cow): | 223, 51 |
Conread position: | 35-381 |
Cow position: | chr5:30276347-30276694 (view UCSC Genome Browser custom track) |
Alignm length: | 355 |
Alignm identity: | 252 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 184, 148 |
Conread position: | 35-383 |
Cow position: | chr5:50821440-50821785 (view UCSC Genome Browser custom track) |
Alignm length: | 357 |
Alignm identity: | 244 |
Alignm E-value: | 8e-39 |
Alignm gaps (pig, cow): | 153, 195 |
Conread position: | 39-388 |
Cow position: | chr5:17631217-17630873 (view UCSC Genome Browser custom track) |
Alignm length: | 356 |
Alignm identity: | 237 |
Alignm E-value: | 1e-31 |
Alignm gaps (pig, cow): | 114, 213 |
Conread position: | 40-371 |
Cow position: | chr5:44994388-44994053 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 233 |
Alignm E-value: | 2e-37 |
Alignm gaps (pig, cow): | 91, 147 |
Conread position: | 40-386 |
Cow position: | chr5:14314180-14314528 (view UCSC Genome Browser custom track) |
Alignm length: | 355 |
Alignm identity: | 260 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 147, 59 |
Conread position: | 40-414 |
Cow position: | chr5:56523831-56524198 (view UCSC Genome Browser custom track) |
Alignm length: | 379 |
Alignm identity: | 276 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 148, 139 |
Conread position: | 41-364 |
Cow position: | chr5:65776734-65776400 (view UCSC Genome Browser custom track) |
Alignm length: | 340 |
Alignm identity: | 240 |
Alignm E-value: | 3.00004e-41 |
Alignm gaps (pig, cow): | 102, 79 |
Conread position: | 41-387 |
Cow position: | chr5:57935455-57935104 (view UCSC Genome Browser custom track) |
Alignm length: | 355 |
Alignm identity: | 260 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 146, 100 |
Conread position: | 42-376 |
Cow position: | chr5:21524824-21525164 (view UCSC Genome Browser custom track) |
Alignm length: | 344 |
Alignm identity: | 250 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 146, 44 |
Conread position: | 44-408 |
Cow position: | chr5:45846032-45845665 (view UCSC Genome Browser custom track) |
Alignm length: | 374 |
Alignm identity: | 273 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 144, 108 |
Conread position: | 55-364 |
Cow position: | chr5:26990070-26990374 (view UCSC Genome Browser custom track) |
Alignm length: | 317 |
Alignm identity: | 230 |
Alignm E-value: | 9.80909e-45 |
Alignm gaps (pig, cow): | 58, 45 |
Conread position: | 59-307 |
Cow position: | chr5:66119580-66119330 (view UCSC Genome Browser custom track) |
Alignm length: | 254 |
Alignm identity: | 176 |
Alignm E-value: | 3e-30 |
Alignm gaps (pig, cow): | 85, 193 |
Conread position: | 79-368 |
Cow position: | chr5:65941556-65941266 (view UCSC Genome Browser custom track) |
Alignm length: | 295 |
Alignm identity: | 211 |
Alignm E-value: | 3.9937e-43 |
Alignm gaps (pig, cow): | 109, 26 |
Conread position: | 80-380 |
Cow position: | chr5:28224152-28224452 (view UCSC Genome Browser custom track) |
Alignm length: | 308 |
Alignm identity: | 219 |
Alignm E-value: | 9.99967e-42 |
Alignm gaps (pig, cow): | 178, 118 |
Conread position: | 90-417 |
Cow position: | chr5:59443544-59443220 (view UCSC Genome Browser custom track) |
Alignm length: | 329 |
Alignm identity: | 226 |
Alignm E-value: | 9.80909e-45 |
Alignm gaps (pig, cow): | 217, 207 |
Conread position: | 94-337 |
Cow position: | chr5:63917696-63917457 (view UCSC Genome Browser custom track) |
Alignm length: | 248 |
Alignm identity: | 184 |
Alignm E-value: | 2e-38 |
Alignm gaps (pig, cow): | 94, 47 |
Conread position: | 117-354 |
Cow position: | chr5:64139297-64139538 (view UCSC Genome Browser custom track) |
Alignm length: | 246 |
Alignm identity: | 179 |
Alignm E-value: | 4e-33 |
Alignm gaps (pig, cow): | 68, 62 |
Conread position: | 123-329 |
Cow position: | chr5:37366630-37366844 (view UCSC Genome Browser custom track) |
Alignm length: | 217 |
Alignm identity: | 158 |
Alignm E-value: | 8e-29 |
Alignm gaps (pig, cow): | 39, 133 |
Conread position: | 129-295 |
Cow position: | chr5:31640173-31640340 (view UCSC Genome Browser custom track) |
Alignm length: | 169 |
Alignm identity: | 121 |
Alignm E-value: | 1e-22 |
Alignm gaps (pig, cow): | 59, 120 |
Conread position: | 135-363 |
Cow position: | chr5:63388547-63388775 (view UCSC Genome Browser custom track) |
Alignm length: | 235 |
Alignm identity: | 162 |
Alignm E-value: | 4e-23 |
Alignm gaps (pig, cow): | 55, 6 |
Conread position: | 140-337 |
Cow position: | chr5:67243681-67243880 (view UCSC Genome Browser custom track) |
Alignm length: | 202 |
Alignm identity: | 142 |
Alignm E-value: | 5e-24 |
Alignm gaps (pig, cow): | 34, 110 |
Conread position: | 141-361 |
Cow position: | chr5:35684692-35684915 (view UCSC Genome Browser custom track) |
Alignm length: | 228 |
Alignm identity: | 158 |
Alignm E-value: | 1e-22 |
Alignm gaps (pig, cow): | 47, 111 |
Conread position: | 141-371 |
Cow position: | chr5:55967125-55966890 (view UCSC Genome Browser custom track) |
Alignm length: | 238 |
Alignm identity: | 163 |
Alignm E-value: | 5e-25 |
Alignm gaps (pig, cow): | 50, 108 |
Conread position: | 141-386 |
Cow position: | chr5:51999977-52000227 (view UCSC Genome Browser custom track) |
Alignm length: | 254 |
Alignm identity: | 170 |
Alignm E-value: | 4e-22 |
Alignm gaps (pig, cow): | 117, 107 |
Conread position: | 144-291 |
Cow position: | chr5:32087960-32087812 (view UCSC Genome Browser custom track) |
Alignm length: | 150 |
Alignm identity: | 110 |
Alignm E-value: | 3e-21 |
Alignm gaps (pig, cow): | 44, 105 |
Conread position: | 147-368 |
Cow position: | chr5:9859954-9859728 (view UCSC Genome Browser custom track) |
Alignm length: | 229 |
Alignm identity: | 166 |
Alignm E-value: | 3e-31 |
Alignm gaps (pig, cow): | 110, 101 |
Conread position: | 148-379 |
Cow position: | chr5:45036785-45037019 (view UCSC Genome Browser custom track) |
Alignm length: | 240 |
Alignm identity: | 166 |
Alignm E-value: | 2e-24 |
Alignm gaps (pig, cow): | 19, 35 |
Conread position: | 152-371 |
Cow position: | chr5:56070622-56070845 (view UCSC Genome Browser custom track) |
Alignm length: | 226 |
Alignm identity: | 157 |
Alignm E-value: | 6e-26 |
Alignm gaps (pig, cow): | 116, 96 |
Conread position: | 154-362 |
Cow position: | chr5:16025689-16025481 (view UCSC Genome Browser custom track) |
Alignm length: | 212 |
Alignm identity: | 150 |
Alignm E-value: | 6e-27 |
Alignm gaps (pig, cow): | 31, 9 |
Conread position: | 156-382 |
Cow position: | chr5:15426301-15426529 (view UCSC Genome Browser custom track) |
Alignm length: | 233 |
Alignm identity: | 166 |
Alignm E-value: | 3e-29 |
Alignm gaps (pig, cow): | 102, 28 |
Conread position: | 162-368 |
Cow position: | chr5:56028751-56028542 (view UCSC Genome Browser custom track) |
Alignm length: | 213 |
Alignm identity: | 153 |
Alignm E-value: | 6e-27 |
Alignm gaps (pig, cow): | 26, 17 |
Conread position: | 186-387 |
Cow position: | chr5:7044906-7044701 (view UCSC Genome Browser custom track) |
Alignm length: | 208 |
Alignm identity: | 145 |
Alignm E-value: | 1e-22 |
Alignm gaps (pig, cow): | 121, 8 |
Conread position: | 213-366 |
Cow position: | chr5:41010166-41010013 (view UCSC Genome Browser custom track) |
Alignm length: | 156 |
Alignm identity: | 114 |
Alignm E-value: | 3e-21 |
Alignm gaps (pig, cow): | 45, 38 |
Show alignments to all cow chromosomes.