Cow genome map

Conread name: rcki26_b12.y1

Conread position: 13-387
Cow position: chr5:6044916-6045298 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 237

Conread position: 22-371
Cow position: chr5:48828785-48829145 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 235

Conread position: 32-308
Cow position: chr5:67212031-67212304 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 197
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 156, 10

Conread position: 33-300
Cow position: chr5:29969283-29969550 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 186
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 160, 146

Conread position: 33-301
Cow position: chr5:44369545-44369812 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 186
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 158, 27

Conread position: 33-376
Cow position: chr5:9099785-9099440 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 234
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 148, 158

Conread position: 33-397
Cow position: chr5:8178832-8179194 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 249
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 225, 154

Conread position: 33-397
Cow position: chr5:47750600-47750963 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 247
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 160, 101

Conread position: 34-307
Cow position: chr5:19969381-19969108 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 195
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 154, 215

Conread position: 34-327
Cow position: chr5:1105209-1104923 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 212
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 154, 107

Conread position: 34-329
Cow position: chr5:47889064-47888766 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 215

Conread position: 34-333
Cow position: chr5:13691924-13691621 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 71

Conread position: 34-334
Cow position: chr5:15363544-15363842 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 215
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 154, 108

Conread position: 34-355
Cow position: chr5:35826252-35826576 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 235
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 154, 57

Conread position: 34-371
Cow position: chr5:62172057-62172403 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 241
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 101, 225

Conread position: 34-377
Cow position: chr5:14550936-14550586 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 218

Conread position: 34-380
Cow position: chr5:36679795-36679437 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 239
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 98, 224

Conread position: 34-381
Cow position: chr5:47317317-47316970 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 297, 151

Conread position: 34-381
Cow position: chr5:50599717-50600052 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 248
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 224, 144

Conread position: 34-382
Cow position: chr5:26467273-26467625 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 118

Conread position: 34-382
Cow position: chr5:29827704-29828049 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 208

Conread position: 34-386
Cow position: chr5:19470532-19470186 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 149

Conread position: 34-386
Cow position: chr5:47871400-47871036 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 121

Conread position: 34-387
Cow position: chr5:52165528-52165173 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 246
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 108, 119

Conread position: 35-329
Cow position: chr5:39299180-39299475 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 208
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 231, 216

Conread position: 35-337
Cow position: chr5:61030577-61030271 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 215
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 159, 215

Conread position: 35-363
Cow position: chr5:55176544-55176871 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 117

Conread position: 35-371
Cow position: chr5:40357235-40356876 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 240
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 108, 202

Conread position: 35-371
Cow position: chr5:51151711-51151369 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 235
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 130, 145

Conread position: 35-371
Cow position: chr5:62107837-62107502 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 230
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 152, 51

Conread position: 35-381
Cow position: chr5:27015345-27015680 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 248
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 223, 51

Conread position: 35-381
Cow position: chr5:30276347-30276694 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 148

Conread position: 35-383
Cow position: chr5:50821440-50821785 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 244
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 153, 195

Conread position: 39-388
Cow position: chr5:17631217-17630873 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 237
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 114, 213

Conread position: 40-371
Cow position: chr5:44994388-44994053 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 233
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 91, 147

Conread position: 40-386
Cow position: chr5:14314180-14314528 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 59

Conread position: 40-414
Cow position: chr5:56523831-56524198 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 139

Conread position: 41-364
Cow position: chr5:65776734-65776400 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 240
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 102, 79

Conread position: 41-387
Cow position: chr5:57935455-57935104 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 100

Conread position: 42-376
Cow position: chr5:21524824-21525164 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 44

Conread position: 44-408
Cow position: chr5:45846032-45845665 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 108

Conread position: 55-364
Cow position: chr5:26990070-26990374 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 230
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 58, 45

Conread position: 59-307
Cow position: chr5:66119580-66119330 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 176
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 85, 193

Conread position: 79-368
Cow position: chr5:65941556-65941266 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 211
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 109, 26

Conread position: 80-380
Cow position: chr5:28224152-28224452 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 219
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 178, 118

Conread position: 90-417
Cow position: chr5:59443544-59443220 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 226
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 217, 207

Conread position: 94-337
Cow position: chr5:63917696-63917457 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 184
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 94, 47

Conread position: 117-354
Cow position: chr5:64139297-64139538 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 179
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 68, 62

Conread position: 123-329
Cow position: chr5:37366630-37366844 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 158
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 39, 133

Conread position: 129-295
Cow position: chr5:31640173-31640340 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 121
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 59, 120

Conread position: 135-363
Cow position: chr5:63388547-63388775 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 162
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 55, 6

Conread position: 140-337
Cow position: chr5:67243681-67243880 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 142
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 34, 110

Conread position: 141-361
Cow position: chr5:35684692-35684915 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 158
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 47, 111

Conread position: 141-371
Cow position: chr5:55967125-55966890 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 163
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 50, 108

Conread position: 141-386
Cow position: chr5:51999977-52000227 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 170
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 117, 107

Conread position: 144-291
Cow position: chr5:32087960-32087812 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 110
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 44, 105

Conread position: 147-368
Cow position: chr5:9859954-9859728 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 166
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 110, 101

Conread position: 148-379
Cow position: chr5:45036785-45037019 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 166
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 19, 35

Conread position: 152-371
Cow position: chr5:56070622-56070845 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 157
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 116, 96

Conread position: 154-362
Cow position: chr5:16025689-16025481 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 150
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 31, 9

Conread position: 156-382
Cow position: chr5:15426301-15426529 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 166
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 102, 28

Conread position: 162-368
Cow position: chr5:56028751-56028542 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 153
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 26, 17

Conread position: 186-387
Cow position: chr5:7044906-7044701 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 145
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 121, 8

Conread position: 213-366
Cow position: chr5:41010166-41010013 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 114
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 45, 38

Show alignments to all cow chromosomes.