Cow genome map
| Conread name: | rcki26_b12.y1 |
| Conread position: | 22-368 |
| Cow position: | chr6:2607266-2607615 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 110 |
| Conread position: | 33-332 |
| Cow position: | chr6:45666126-45665825 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 148, 176 |
| Conread position: | 33-383 |
| Cow position: | chr6:65870689-65871044 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 47 |
| Conread position: | 33-386 |
| Cow position: | chr6:58031787-58032139 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 154, 96 |
| Conread position: | 34-299 |
| Cow position: | chr6:7253773-7253495 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 107, 227 |
| Conread position: | 34-302 |
| Cow position: | chr6:37331629-37331891 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 44, 94 |
| Conread position: | 34-315 |
| Cow position: | chr6:13741363-13741640 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 260, 89 |
| Conread position: | 34-316 |
| Cow position: | chr6:12844975-12845256 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 217 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 86, 152 |
| Conread position: | 34-317 |
| Cow position: | chr6:10605349-10605637 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 216 |
| Conread position: | 34-329 |
| Cow position: | chr6:18080850-18080550 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 19, 180 |
| Conread position: | 34-329 |
| Cow position: | chr6:46666772-46667069 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 218 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 101, 33 |
| Conread position: | 34-333 |
| Cow position: | chr6:21312090-21311787 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 100 |
| Conread position: | 34-338 |
| Cow position: | chr6:24031040-24031347 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 218 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 154, 215 |
| Conread position: | 34-362 |
| Cow position: | chr6:12550933-12551262 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 145 |
| Conread position: | 34-364 |
| Cow position: | chr6:61631948-61631612 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 240 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 154, 100 |
| Conread position: | 34-380 |
| Cow position: | chr6:2546909-2547258 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 24 |
| Conread position: | 35-300 |
| Cow position: | chr6:25358743-25359003 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 196 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 206, 149 |
| Conread position: | 35-300 |
| Cow position: | chr6:54806889-54807155 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 191 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 155, 214 |
| Conread position: | 35-334 |
| Cow position: | chr6:41824162-41823859 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 145, 230 |
| Conread position: | 35-362 |
| Cow position: | chr6:8804877-8804536 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 107, 73 |
| Conread position: | 35-364 |
| Cow position: | chr6:5958349-5958030 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 70 |
| Conread position: | 35-371 |
| Cow position: | chr6:606928-607263 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 214 |
| Conread position: | 35-387 |
| Cow position: | chr6:1770528-1770180 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 27 |
| Conread position: | 36-337 |
| Cow position: | chr6:12623138-12623437 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 149 |
| Conread position: | 40-329 |
| Cow position: | chr6:54140490-54140767 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 211 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 148, 15 |
| Conread position: | 40-350 |
| Cow position: | chr6:1784094-1783795 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 232 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 148, 79 |
| Conread position: | 41-383 |
| Cow position: | chr6:17090265-17090614 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 93, 73 |
| Conread position: | 47-393 |
| Cow position: | chr6:35181574-35181236 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 69 |
| Conread position: | 59-383 |
| Cow position: | chr6:5609768-5609431 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 83, 211 |
| Conread position: | 80-367 |
| Cow position: | chr6:34196437-34196151 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 199 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 108, 172 |
| Conread position: | 81-386 |
| Cow position: | chr6:63272905-63272593 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 69, 171 |
| Conread position: | 82-298 |
| Cow position: | chr6:642864-642647 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 107, 169 |
| Conread position: | 94-371 |
| Cow position: | chr6:42961642-42961358 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 93, 163 |
| Conread position: | 105-398 |
| Cow position: | chr6:35471790-35471488 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 219 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 83, 147 |
| Conread position: | 120-313 |
| Cow position: | chr6:3719257-3719061 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 57, 131 |
| Conread position: | 120-387 |
| Cow position: | chr6:31535821-31535551 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 32, 130 |
| Conread position: | 124-328 |
| Cow position: | chr6:1002479-1002277 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 52, 39 |
| Conread position: | 132-377 |
| Cow position: | chr6:13040215-13040459 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 44, 80 |
| Conread position: | 141-377 |
| Cow position: | chr6:60350527-60350285 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 47, 108 |
| Conread position: | 147-328 |
| Cow position: | chr6:59302046-59301864 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 41, 12 |
| Conread position: | 147-364 |
| Cow position: | chr6:45160513-45160298 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 31, 39 |
| Conread position: | 148-367 |
| Cow position: | chr6:39994682-39994462 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 40, 104 |
| Conread position: | 149-318 |
| Cow position: | chr6:21184736-21184904 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 39, 93 |
| Conread position: | 149-368 |
| Cow position: | chr6:34031448-34031662 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 40, 89 |
| Conread position: | 159-364 |
| Cow position: | chr6:53139139-53138925 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 28, 90 |
| Conread position: | 160-386 |
| Cow position: | chr6:24961936-24962161 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 28, 89 |
| Conread position: | 208-387 |
| Cow position: | chr6:44984166-44984348 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 99, 40 |
Show alignments to all cow chromosomes.