Cow genome map
| Conread name: | rcki26_b12.y1 |
| Conread position: | 27-314 |
| Cow position: | chr9:54666315-54666030 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 108 |
| Conread position: | 31-362 |
| Cow position: | chr9:32812754-32812419 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 51 |
| Conread position: | 33-300 |
| Cow position: | chr9:1990810-1990540 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 59, 218 |
| Conread position: | 33-328 |
| Cow position: | chr9:22656541-22656838 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 158, 216 |
| Conread position: | 33-359 |
| Cow position: | chr9:24917547-24917217 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 66, 22 |
| Conread position: | 34-309 |
| Cow position: | chr9:38385474-38385743 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 195 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 157, 99 |
| Conread position: | 34-363 |
| Cow position: | chr9:36446028-36445702 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 148 |
| Conread position: | 34-371 |
| Cow position: | chr9:23430745-23431078 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 239 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 154, 73 |
| Conread position: | 34-371 |
| Cow position: | chr9:64092087-64091750 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 240 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 155, 26 |
| Conread position: | 34-376 |
| Cow position: | chr9:5393441-5393109 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 245 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 155, 60 |
| Conread position: | 34-383 |
| Cow position: | chr9:61023012-61022664 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 238 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 154, 36 |
| Conread position: | 34-386 |
| Cow position: | chr9:11299297-11299639 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 258 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 53, 67 |
| Conread position: | 35-333 |
| Cow position: | chr9:31662869-31662571 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 99 |
| Conread position: | 35-362 |
| Cow position: | chr9:5510127-5509798 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 214 |
| Conread position: | 35-364 |
| Cow position: | chr9:8868733-8869069 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 71 |
| Conread position: | 35-371 |
| Cow position: | chr9:1951867-1952203 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 146 |
| Conread position: | 35-378 |
| Cow position: | chr9:23028203-23027863 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 151 |
| Conread position: | 35-388 |
| Cow position: | chr9:8534283-8534640 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 112 |
| Conread position: | 40-306 |
| Cow position: | chr9:58451709-58451966 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 148, 80 |
| Conread position: | 40-362 |
| Cow position: | chr9:28726333-28726646 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 235 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 148, 39 |
| Conread position: | 40-379 |
| Cow position: | chr9:6880168-6879830 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 242 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 31, 106 |
| Conread position: | 40-398 |
| Cow position: | chr9:22361411-22361054 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 108 |
| Conread position: | 40-414 |
| Cow position: | chr9:8998752-8998380 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 9 |
| Conread position: | 42-312 |
| Cow position: | chr9:3169123-3169395 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 97, 131 |
| Conread position: | 42-364 |
| Cow position: | chr9:44466953-44467278 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 230 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 146, 207 |
| Conread position: | 47-383 |
| Cow position: | chr9:56453742-56453386 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 244 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 85, 52 |
| Conread position: | 48-371 |
| Cow position: | chr9:34957662-34957987 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 131 |
| Conread position: | 62-329 |
| Cow position: | chr9:61997221-61997488 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 201 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 124, 22 |
| Conread position: | 63-350 |
| Cow position: | chr9:5621656-5621948 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 212 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 126, 78 |
| Conread position: | 63-382 |
| Cow position: | chr9:4929000-4928683 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 224 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 205, 73 |
| Conread position: | 66-381 |
| Cow position: | chr9:5763258-5763575 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 183 |
| Conread position: | 68-380 |
| Cow position: | chr9:26404159-26403840 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 182 |
| Conread position: | 80-371 |
| Cow position: | chr9:38344253-38343956 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 214 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 100, 170 |
| Conread position: | 86-381 |
| Cow position: | chr9:34666760-34666475 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 206 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 232, 136 |
| Conread position: | 87-371 |
| Cow position: | chr9:22151741-22152017 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 101, 36 |
| Conread position: | 93-371 |
| Cow position: | chr9:5319974-5319699 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 199 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 95, 156 |
| Conread position: | 114-333 |
| Cow position: | chr9:64155532-64155752 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 76, 135 |
| Conread position: | 116-328 |
| Cow position: | chr9:52819175-52818965 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 142, 71 |
| Conread position: | 126-371 |
| Cow position: | chr9:25958724-25958486 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 62, 16 |
| Conread position: | 132-379 |
| Cow position: | chr9:48343907-48343659 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 172, 118 |
| Conread position: | 141-364 |
| Cow position: | chr9:58133727-58133946 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 49, 38 |
| Conread position: | 148-387 |
| Cow position: | chr9:8338320-8338079 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 37, 101 |
| Conread position: | 150-368 |
| Cow position: | chr9:3070135-3070352 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 38, 92 |
| Conread position: | 151-350 |
| Cow position: | chr9:13670924-13670723 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 23, 99 |
| Conread position: | 159-371 |
| Cow position: | chr9:5532231-5532013 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 29, 20 |
| Conread position: | 159-387 |
| Cow position: | chr9:55287612-55287842 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 29, 93 |
| Conread position: | 170-485 |
| Cow position: | chr9:41995982-41995664 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 18, 81 |
| Conread position: | 173-386 |
| Cow position: | chr9:8546583-8546371 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 15, 76 |
| Conread position: | 188-368 |
| Cow position: | chr9:33119633-33119817 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 122, 109 |
| Conread position: | 192-390 |
| Cow position: | chr9:8563086-8562884 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 66, 56 |
Show alignments to all cow chromosomes.