Cow genome map
| Conread name: | rcki26_b12.y1 |
| Conread position: | 4-300 |
| Cow position: | chrX:22873017-22873317 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 9, 249 |
| Conread position: | 32-382 |
| Cow position: | chrX:11806365-11806012 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 8 |
| Conread position: | 33-351 |
| Cow position: | chrX:27590382-27590064 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 158, 97 |
| Conread position: | 33-386 |
| Cow position: | chrX:18898000-18897648 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 246 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 226, 152 |
| Conread position: | 33-413 |
| Cow position: | chrX:45786781-45787161 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 263 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 225, 172 |
| Conread position: | 34-299 |
| Cow position: | chrX:30919741-30919474 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 75, 7 |
| Conread position: | 34-316 |
| Cow position: | chrX:32584161-32583877 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 157, 165 |
| Conread position: | 34-317 |
| Cow position: | chrX:32978605-32978321 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 192 |
| Conread position: | 34-355 |
| Cow position: | chrX:27105910-27106237 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 226 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 153, 215 |
| Conread position: | 34-364 |
| Cow position: | chrX:11655730-11656075 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 247 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 35, 225 |
| Conread position: | 34-371 |
| Cow position: | chrX:17497748-17498073 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 245 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 154, 208 |
| Conread position: | 34-377 |
| Cow position: | chrX:25035734-25035384 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 246 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 153, 93 |
| Conread position: | 34-380 |
| Cow position: | chrX:40452561-40452212 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 215 |
| Conread position: | 34-381 |
| Cow position: | chrX:34754540-34754187 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 218 |
| Conread position: | 34-381 |
| Cow position: | chrX:42462096-42461743 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 217 |
| Conread position: | 34-382 |
| Cow position: | chrX:37232063-37232414 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 96 |
| Conread position: | 34-390 |
| Cow position: | chrX:34401650-34402006 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 72 |
| Conread position: | 35-295 |
| Cow position: | chrX:33803362-33803099 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 108, 60 |
| Conread position: | 35-317 |
| Cow position: | chrX:45043211-45043497 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 154, 224 |
| Conread position: | 35-348 |
| Cow position: | chrX:7806031-7806345 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 145, 83 |
| Conread position: | 35-361 |
| Cow position: | chrX:21592939-21593268 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 98 |
| Conread position: | 35-367 |
| Cow position: | chrX:42507991-42507657 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 99 |
| Conread position: | 35-369 |
| Cow position: | chrX:30543629-30543300 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 223, 130 |
| Conread position: | 35-371 |
| Cow position: | chrX:38439127-38439468 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 45 |
| Conread position: | 35-383 |
| Cow position: | chrX:37489371-37489725 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 250 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 105, 219 |
| Conread position: | 35-386 |
| Cow position: | chrX:10437998-10437662 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 68, 100 |
| Conread position: | 35-386 |
| Cow position: | chrX:42994267-42994618 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 187 |
| Conread position: | 35-387 |
| Cow position: | chrX:23564144-23563786 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 214 |
| Conread position: | 35-387 |
| Cow position: | chrX:32309754-32310111 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 240 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 109, 218 |
| Conread position: | 35-387 |
| Cow position: | chrX:41743566-41743919 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 248 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 153, 144 |
| Conread position: | 35-423 |
| Cow position: | chrX:11844585-11844205 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 99 |
| Conread position: | 40-354 |
| Cow position: | chrX:44731258-44731571 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 135, 98 |
| Conread position: | 40-364 |
| Cow position: | chrX:15139890-15139562 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 87, 73 |
| Conread position: | 40-371 |
| Cow position: | chrX:1616393-1616054 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 212 |
| Conread position: | 40-386 |
| Cow position: | chrX:40558018-40557674 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 198 |
| Conread position: | 42-316 |
| Cow position: | chrX:36778065-36778343 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 93, 215 |
| Conread position: | 42-415 |
| Cow position: | chrX:35388247-35387869 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 208 |
| Conread position: | 43-383 |
| Cow position: | chrX:45501809-45502147 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 236 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 144, 206 |
| Conread position: | 43-406 |
| Cow position: | chrX:20878102-20877737 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 254 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 148, 206 |
| Conread position: | 45-362 |
| Cow position: | chrX:3654271-3654589 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 143, 81 |
| Conread position: | 45-377 |
| Cow position: | chrX:14884299-14883962 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 238 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 107, 27 |
| Conread position: | 47-369 |
| Cow position: | chrX:38007103-38006776 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 195 |
| Conread position: | 48-364 |
| Cow position: | chrX:7645924-7646236 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 126, 196 |
| Conread position: | 54-329 |
| Cow position: | chrX:42855083-42855359 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 80 |
| Conread position: | 55-363 |
| Cow position: | chrX:25337850-25338167 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 223 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 95, 196 |
| Conread position: | 55-381 |
| Cow position: | chrX:7508800-7509142 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 86, 18 |
| Conread position: | 62-367 |
| Cow position: | chrX:29289256-29289565 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 187 |
| Conread position: | 80-387 |
| Cow position: | chrX:20709773-20710080 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 214 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 111, 54 |
| Conread position: | 83-371 |
| Cow position: | chrX:35273045-35273344 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 93, 292 |
| Conread position: | 86-300 |
| Cow position: | chrX:46606806-46606595 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 195, 105 |
| Conread position: | 105-365 |
| Cow position: | chrX:9997608-9997351 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 85, 22 |
| Conread position: | 105-371 |
| Cow position: | chrX:42874701-42874974 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 197 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 153, 143 |
| Conread position: | 107-364 |
| Cow position: | chrX:7496974-7497223 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 37, 16 |
| Conread position: | 115-376 |
| Cow position: | chrX:40183617-40183349 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 73, 134 |
| Conread position: | 128-316 |
| Cow position: | chrX:48536920-48536731 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 21, 121 |
| Conread position: | 129-371 |
| Cow position: | chrX:7721730-7721979 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 19, 15 |
| Conread position: | 135-386 |
| Cow position: | chrX:27432166-27431909 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 53, 124 |
| Conread position: | 141-355 |
| Cow position: | chrX:21663068-21663285 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 125, 107 |
| Conread position: | 141-367 |
| Cow position: | chrX:9416934-9416706 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 48, 101 |
| Conread position: | 142-380 |
| Cow position: | chrX:21672311-21672555 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 48, 107 |
| Conread position: | 147-372 |
| Cow position: | chrX:27772191-27771973 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 160, 36 |
| Conread position: | 148-317 |
| Cow position: | chrX:42499263-42499094 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 43, 99 |
| Conread position: | 148-339 |
| Cow position: | chrX:9855066-9855261 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 40, 64 |
| Conread position: | 148-339 |
| Cow position: | chrX:9953907-9954102 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 40, 64 |
| Conread position: | 148-371 |
| Cow position: | chrX:38549214-38549437 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 40, 101 |
| Conread position: | 148-382 |
| Cow position: | chrX:41884652-41884413 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 40, 101 |
| Conread position: | 148-386 |
| Cow position: | chrX:23514252-23514010 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 41, 51 |
| Conread position: | 148-394 |
| Cow position: | chrX:619242-618989 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 41, 101 |
| Conread position: | 149-361 |
| Cow position: | chrX:9201314-9201530 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 37, 32 |
| Conread position: | 154-309 |
| Cow position: | chrX:18812030-18812179 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 140, 25 |
| Conread position: | 154-364 |
| Cow position: | chrX:17662825-17662610 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 34, 84 |
| Conread position: | 154-371 |
| Cow position: | chrX:37048809-37048587 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 35, 97 |
| Conread position: | 157-333 |
| Cow position: | chrX:16541901-16541723 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 31, 23 |
| Conread position: | 159-386 |
| Cow position: | chrX:1499446-1499670 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 29, 83 |
| Conread position: | 162-371 |
| Cow position: | chrX:29602053-29601840 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 12, 27 |
| Conread position: | 191-383 |
| Cow position: | chrX:31311835-31312031 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 67, 57 |
Show alignments to all cow chromosomes.