Non-Coding RNA Search

Cow genome map


           Conread name:
           rcte07_n20.y1
        

               Conread position:
               1-275
               

               Cow position:
               chrX:45845955-45846232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               202
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               106, 11
               

               Conread position:
               1-302
               

               Cow position:
               chrX:15007299-15006990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               207
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               31, 22
               

               Conread position:
               1-308
               

               Cow position:
               chrX:27772110-27771804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               206
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               31, 22
               

               Conread position:
               2-295
               

               Cow position:
               chrX:44396873-44397161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               209
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               106, 62
               

               Conread position:
               2-311
               

               Cow position:
               chrX:5872165-5872484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               215
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               23, 155
               

               Conread position:
               4-274
               

               Cow position:
               chrX:35224151-35224426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 45
               

               Conread position:
               6-281
               

               Cow position:
               chrX:20584185-20584465 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 23
               

               Conread position:
               6-287
               

               Cow position:
               chrX:20801634-20801913 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               102, 15
               

               Conread position:
               6-300
               

               Cow position:
               chrX:37781251-37780954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               102, 6
               

               Conread position:
               6-314
               

               Cow position:
               chrX:27432051-27431748 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               218
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               102, 6
               

               Conread position:
               6-322
               

               Cow position:
               chrX:28866140-28865831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               213
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               98, 17
               

               Conread position:
               8-307
               

               Cow position:
               chrX:32623447-32623735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               197
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               117, 5
               

               Conread position:
               9-302
               

               Cow position:
               chrX:14973879-14973588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               204
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               51, 26
               

               Conread position:
               9-302
               

               Cow position:
               chrX:17888553-17888265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               206
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               24, 14
               

               Conread position:
               9-308
               

               Cow position:
               chrX:878518-878216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 132
               

               Conread position:
               9-321
               

               Cow position:
               chrX:34532383-34532690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 14
               

               Conread position:
               10-253
               

               Cow position:
               chrX:27680261-27680507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               168
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               87, 131
               

               Conread position:
               10-260
               

               Cow position:
               chrX:26625807-26625555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               181
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               88, 26
               

               Conread position:
               10-295
               

               Cow position:
               chrX:31442962-31442679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               205
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               22, 13
               

               Conread position:
               10-311
               

               Cow position:
               chrX:18695060-18694766 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               203
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               94, 13
               

               Conread position:
               10-311
               

               Cow position:
               chrX:38853056-38853363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               225
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               20, 125
               

               Conread position:
               10-316
               

               Cow position:
               chrX:28878308-28877999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               211
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               19, 41
               

               Conread position:
               10-320
               

               Cow position:
               chrX:13647921-13647613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 22
               

               Conread position:
               10-322
               

               Cow position:
               chrX:17231594-17231910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               213
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               49, 13
               

               Conread position:
               11-270
               

               Cow position:
               chrX:39126192-39126452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               178
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               13, 55
               

               Conread position:
               11-302
               

               Cow position:
               chrX:35383149-35382879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               198
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               159, 16
               

               Conread position:
               13-315
               

               Cow position:
               chrX:2004005-2003705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               203
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               16, 23
               

               Conread position:
               15-277
               

               Cow position:
               chrX:5638299-5638025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               187
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               9, 64
               

               Conread position:
               16-314
               

               Cow position:
               chrX:4515554-4515861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               220
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               92, 41
               

               Conread position:
               19-298
               

               Cow position:
               chrX:41068593-41068881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               201
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               39, 11
               

               Conread position:
               19-302
               

               Cow position:
               chrX:24424517-24424245 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               187
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               131, 87
               

               Conread position:
               19-311
               

               Cow position:
               chrX:4043980-4043700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               203
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               90, 11
               

               Conread position:
               19-314
               

               Cow position:
               chrX:17541834-17542131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               199
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               17, 126
               

               Conread position:
               19-322
               

               Cow position:
               chrX:10831622-10831308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               211
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               88, 127
               

               Conread position:
               19-322
               

               Cow position:
               chrX:12249674-12249988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               219
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               89, 58
               

               Conread position:
               19-322
               

               Cow position:
               chrX:34315397-34315695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               214
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               90, 11
               

               Conread position:
               19-322
               

               Cow position:
               chrX:36975820-36976125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               39, 131
               

               Conread position:
               19-322
               

               Cow position:
               chrX:42247313-42247008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               216
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               43, 11
               

               Conread position:
               23-295
               

               Cow position:
               chrX:5679691-5679421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               188
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               43, 124
               

               Conread position:
               23-322
               

               Cow position:
               chrX:169664-169368 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               214
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               35, 11
               

               Conread position:
               26-258
               

               Cow position:
               chrX:38936578-38936814 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               164
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               36, 129
               

               Conread position:
               26-320
               

               Cow position:
               chrX:9635303-9635018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               207
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               82, 47
               

               Conread position:
               27-298
               

               Cow position:
               chrX:33855354-33855066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               203
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               81, 228
               

               Conread position:
               28-274
               

               Cow position:
               chrX:37119475-37119723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               171
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               76, 34
               

               Conread position:
               28-298
               

               Cow position:
               chrX:38963985-38964262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               62, 26
               

               Conread position:
               28-311
               

               Cow position:
               chrX:13382208-13382492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               206
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               5, 116
               

               Conread position:
               29-214
               

               Cow position:
               chrX:26876002-26875811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               79, 112
               

               Conread position:
               29-218
               

               Cow position:
               chrX:13785482-13785286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               76, 113
               

               Conread position:
               29-257
               

               Cow position:
               chrX:7509023-7509252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               74, 114
               

               Conread position:
               29-270
               

               Cow position:
               chrX:8925582-8925824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               171
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               79, 115
               

               Conread position:
               29-275
               

               Cow position:
               chrX:1514526-1514288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               174
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               32, 117
               

               Conread position:
               29-277
               

               Cow position:
               chrX:11939046-11938801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 104
               

               Conread position:
               29-297
               

               Cow position:
               chrX:1616163-1615895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               197
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               78, 121
               

               Conread position:
               29-301
               

               Cow position:
               chrX:29120927-29121204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               196
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               79, 120
               

               Conread position:
               29-305
               

               Cow position:
               chrX:619123-618847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 112
               

               Conread position:
               29-308
               

               Cow position:
               chrX:17725855-17726140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 112
               

               Conread position:
               29-310
               

               Cow position:
               chrX:34401879-34402171 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               207
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               76, 116
               

               Conread position:
               29-320
               

               Cow position:
               chrX:17794866-17795151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               205
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               117, 14
               

               Conread position:
               30-277
               

               Cow position:
               chrX:37232295-37232540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               184
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               82, 108
               

               Conread position:
               30-298
               

               Cow position:
               chrX:6265715-6265443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               75, 22
               

               Conread position:
               30-301
               

               Cow position:
               chrX:31436360-31436631 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 96
               

               Conread position:
               30-302
               

               Cow position:
               chrX:7710661-7710380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               188
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               30, 81
               

               Conread position:
               30-308
               

               Cow position:
               chrX:29194116-29194392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               195
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               66, 118
               

               Conread position:
               30-311
               

               Cow position:
               chrX:43730336-43730057 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               203
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               13, 6
               

               Conread position:
               30-322
               

               Cow position:
               chrX:16416392-16416676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               203
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               35, 112
               

               Conread position:
               31-314
               

               Cow position:
               chrX:46291022-46291314 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               205
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               77, 15
               

               Conread position:
               32-192
               

               Cow position:
               chrX:19015322-19015485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               126
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               32-218
               

               Cow position:
               chrX:678680-678481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               73, 15
               

               Conread position:
               32-275
               

               Cow position:
               chrX:917480-917237 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               175
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               76, 40
               

               Conread position:
               32-277
               

               Cow position:
               chrX:7161944-7162189 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               178
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               76, 114
               

               Conread position:
               32-278
               

               Cow position:
               chrX:38066566-38066321 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               180
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               83, 102
               

               Conread position:
               32-280
               

               Cow position:
               chrX:11082730-11082486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               172
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               97, 69
               

               Conread position:
               32-281
               

               Cow position:
               chrX:10412101-10411847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               177
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               75, 57
               

               Conread position:
               32-282
               

               Cow position:
               chrX:7646140-7646394 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               136, 64
               

               Conread position:
               32-282
               

               Cow position:
               chrX:37986117-37986363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               186
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               63, 149
               

               Conread position:
               32-285
               

               Cow position:
               chrX:41870957-41871210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               239, 110
               

               Conread position:
               32-289
               

               Cow position:
               chrX:11073304-11073047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               185
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               33, 11
               

               Conread position:
               32-293
               

               Cow position:
               chrX:46587701-46587971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               181
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               32, 119
               

               Conread position:
               32-295
               

               Cow position:
               chrX:45976804-45977077 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               200
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               27, 111
               

               Conread position:
               32-296
               

               Cow position:
               chrX:45110543-45110808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               180
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               76, 14
               

               Conread position:
               32-297
               

               Cow position:
               chrX:11614583-11614847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               193
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               26, 32
               

               Conread position:
               32-297
               

               Cow position:
               chrX:15814971-15815236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               60, 116
               

               Conread position:
               32-297
               

               Cow position:
               chrX:31311913-31312182 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 107
               

               Conread position:
               32-300
               

               Cow position:
               chrX:7721873-7722142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               194
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               53, 49
               

               Conread position:
               32-300
               

               Cow position:
               chrX:45430133-45429865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               190
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               6, 112
               

               Conread position:
               32-301
               

               Cow position:
               chrX:5919380-5919652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 107
               

               Conread position:
               32-301
               

               Cow position:
               chrX:14275850-14275586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               32-301
               

               Cow position:
               chrX:27145507-27145761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               202
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               32-302
               

               Cow position:
               chrX:1499549-1499823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               34, 117
               

               Conread position:
               32-302
               

               Cow position:
               chrX:12979943-12979674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               257, 72
               

               Conread position:
               32-302
               

               Cow position:
               chrX:14884074-14883798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               194
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               76, 107
               

               Conread position:
               32-302
               

               Cow position:
               chrX:21986408-21986132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               204
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               73, 118
               

               Conread position:
               32-302
               

               Cow position:
               chrX:34411728-34412004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 18
               

               Conread position:
               32-302
               

               Cow position:
               chrX:37489610-37489876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               188
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               33, 110
               

               Conread position:
               32-302
               

               Cow position:
               chrX:38642145-38642408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 50
               

               Conread position:
               32-303
               

               Cow position:
               chrX:45502036-45502305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               196
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               65, 48
               

               Conread position:
               32-305
               

               Cow position:
               chrX:6278618-6278337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               189
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               26, 118
               

               Conread position:
               32-305
               

               Cow position:
               chrX:7695632-7695911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               204
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               33, 120
               

               Conread position:
               32-305
               

               Cow position:
               chrX:35268766-35269022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               192
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               95, 52
               

               Conread position:
               32-306
               

               Cow position:
               chrX:38006880-38006610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 155
               

               Conread position:
               32-308
               

               Cow position:
               chrX:9416809-9416518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               195
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               76, 156
               

               Conread position:
               32-308
               

               Cow position:
               chrX:40557797-40557513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               208
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               76, 109
               

               Conread position:
               32-309
               

               Cow position:
               chrX:42171412-42171129 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               195
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               76, 111
               

               Conread position:
               32-310
               

               Cow position:
               chrX:13177581-13177312 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               213
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               63, 104
               

               Conread position:
               32-310
               

               Cow position:
               chrX:33493662-33493941 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               202
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               72, 37
               

               Conread position:
               32-311
               

               Cow position:
               chrX:616378-616091 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 126
               

               Conread position:
               32-311
               

               Cow position:
               chrX:9365791-9365509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               76, 115
               

               Conread position:
               32-311
               

               Cow position:
               chrX:11085173-11084898 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               30, 77
               

               Conread position:
               32-311
               

               Cow position:
               chrX:11717900-11717614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               32-311
               

               Cow position:
               chrX:23785541-23785815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               190
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               26, 81
               

               Conread position:
               32-311
               

               Cow position:
               chrX:27394135-27393859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               204
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               76, 30
               

               Conread position:
               32-311
               

               Cow position:
               chrX:29680376-29680093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               197
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               76, 112
               

               Conread position:
               32-311
               

               Cow position:
               chrX:36067901-36068182 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               203
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               74, 18
               

               Conread position:
               32-311
               

               Cow position:
               chrX:40269372-40269661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               209
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               76, 113
               

               Conread position:
               32-314
               

               Cow position:
               chrX:8869518-8869231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 31
               

               Conread position:
               32-314
               

               Cow position:
               chrX:11655976-11656251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               32-314
               

               Cow position:
               chrX:38218595-38218886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               74, 30
               

               Conread position:
               32-315
               

               Cow position:
               chrX:37072292-37072560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               202
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               32-316
               

               Cow position:
               chrX:8730970-8731261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               36, 196
               

               Conread position:
               32-316
               

               Cow position:
               chrX:39415483-39415201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               50, 106
               

               Conread position:
               32-319
               

               Cow position:
               chrX:42492631-42492351 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               196
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               29, 114
               

               Conread position:
               32-320
               

               Cow position:
               chrX:14599417-14599704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               200
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               75, 94
               

               Conread position:
               32-320
               

               Cow position:
               chrX:22482802-22482518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               205
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               98, 74
               

               Conread position:
               32-320
               

               Cow position:
               chrX:27228007-27228300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               210
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               33, 115
               

               Conread position:
               32-320
               

               Cow position:
               chrX:31252302-31252579 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               197
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               76, 144
               

               Conread position:
               32-322
               

               Cow position:
               chrX:4399013-4399291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               207
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               75, 106
               

               Conread position:
               32-322
               

               Cow position:
               chrX:4632968-4632681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               203
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               26, 109
               

               Conread position:
               32-322
               

               Cow position:
               chrX:4996485-4996761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               200
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               74, 28
               

               Conread position:
               32-322
               

               Cow position:
               chrX:5118618-5118325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 106
               

               Conread position:
               32-322
               

               Cow position:
               chrX:11633562-11633855 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               201
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               29, 120
               

               Conread position:
               32-322
               

               Cow position:
               chrX:13912963-13913248 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               206
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               129, 37
               

               Conread position:
               32-322
               

               Cow position:
               chrX:20340004-20339720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               204
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               77, 20
               

               Conread position:
               32-322
               

               Cow position:
               chrX:23514131-23513834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               218
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               75, 113
               

               Conread position:
               32-322
               

               Cow position:
               chrX:26881684-26881388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 113
               

               Conread position:
               32-322
               

               Cow position:
               chrX:29542335-29542055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               209
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               71, 107
               

               Conread position:
               32-322
               

               Cow position:
               chrX:31294673-31294396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               203
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               37, 109
               

               Conread position:
               32-322
               

               Cow position:
               chrX:32820912-32821213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               215
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               26, 117
               

               Conread position:
               32-322
               

               Cow position:
               chrX:34502806-34503101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               215
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               73, 118
               

               Conread position:
               32-322
               

               Cow position:
               chrX:34543670-34543958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               199
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               30, 96
               

               Conread position:
               32-322
               

               Cow position:
               chrX:35273240-35273545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               214
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               52, 186
               

               Conread position:
               32-322
               

               Cow position:
               chrX:35542779-35543057 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               218
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               76, 117
               

               Conread position:
               32-322
               

               Cow position:
               chrX:40035558-40035266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 40
               

               Conread position:
               32-322
               

               Cow position:
               chrX:40685447-40685156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 119
               

               Conread position:
               32-322
               

               Cow position:
               chrX:43115035-43115322 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               216
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               15, 107
               

               Conread position:
               33-277
               

               Cow position:
               chrX:6544141-6544387 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               185
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               75, 113
               

               Conread position:
               33-292
               

               Cow position:
               chrX:9201435-9201696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               199
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               73, 108
               

               Conread position:
               33-298
               

               Cow position:
               chrX:20151731-20152010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               190
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               32, 181
               

               Conread position:
               33-298
               

               Cow position:
               chrX:23091766-23092027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               194
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               76, 34
               

               Conread position:
               33-304
               

               Cow position:
               chrX:45174734-45175010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               194
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               53, 106
               

               Conread position:
               33-308
               

               Cow position:
               chrX:41884529-41884248 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 108
               

               Conread position:
               33-314
               

               Cow position:
               chrX:22074685-22074970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 110
               

               Conread position:
               33-314
               

               Cow position:
               chrX:29601945-29601656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               210
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               75, 119
               

               Conread position:
               33-314
               

               Cow position:
               chrX:35885845-35885559 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               191
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               30, 119
               

               Conread position:
               33-322
               

               Cow position:
               chrX:7351184-7351477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               198
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               33, 123
               

               Conread position:
               33-322
               

               Cow position:
               chrX:27206683-27206972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               101, 57
               

               Conread position:
               33-322
               

               Cow position:
               chrX:34565168-34565458 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               205
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               29, 53
               

               Conread position:
               33-322
               

               Cow position:
               chrX:41027042-41027333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               211
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               75, 29
               

               Conread position:
               34-263
               

               Cow position:
               chrX:47362725-47362504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               94, 47
               

               Conread position:
               34-282
               

               Cow position:
               chrX:17662707-17662460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               176
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               74, 119
               

               Conread position:
               34-292
               

               Cow position:
               chrX:48014327-48014583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               25, 63
               

               Conread position:
               34-298
               

               Cow position:
               chrX:34792422-34792159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               193
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               74, 200
               

               Conread position:
               34-314
               

               Cow position:
               chrX:38094637-38094351 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               206
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               28, 173
               

               Conread position:
               34-314
               

               Cow position:
               chrX:42927933-42927656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               213
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               70, 103
               

               Conread position:
               34-322
               

               Cow position:
               chrX:42381216-42380937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               213
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               27, 53
               

               Conread position:
               35-277
               

               Cow position:
               chrX:2523776-2523549 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               181
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               10, 56
               

               Conread position:
               35-277
               

               Cow position:
               chrX:29229896-29230132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               6, 74
               

               Conread position:
               35-281
               

               Cow position:
               chrX:42470054-42469804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 38
               

               Conread position:
               35-293
               

               Cow position:
               chrX:35413507-35413760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               127, 107
               

               Conread position:
               35-296
               

               Cow position:
               chrX:22387356-22387098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               175
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               28, 90
               

               Conread position:
               35-299
               

               Cow position:
               chrX:9651138-9650869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               199
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               70, 105
               

               Conread position:
               35-299
               

               Cow position:
               chrX:12437365-12437119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               200
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               35-302
               

               Cow position:
               chrX:6413931-6414199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               194
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               21, 110
               

               Conread position:
               35-302
               

               Cow position:
               chrX:46072933-46072661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               187
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               73, 109
               

               Conread position:
               35-305
               

               Cow position:
               chrX:41879045-41878771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               191
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               60, 78
               

               Conread position:
               35-306
               

               Cow position:
               chrX:38549339-38549609 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               194
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               73, 29
               

               Conread position:
               35-311
               

               Cow position:
               chrX:6690371-6690093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               194
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               8, 57
               

               Conread position:
               35-322
               

               Cow position:
               chrX:30338055-30337781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               197
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               244, 38
               

               Conread position:
               35-322
               

               Cow position:
               chrX:38654543-38654259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               206
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               73, 43
               

               Conread position:
               36-274
               

               Cow position:
               chrX:19273834-19273577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               195
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               36-280
               

               Cow position:
               chrX:7571792-7572042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               190
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               72, 24
               

               Conread position:
               36-288
               

               Cow position:
               chrX:39558462-39558206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               184
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               71, 106
               

               Conread position:
               36-308
               

               Cow position:
               chrX:42235640-42235359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               193
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               72, 114
               

               Conread position:
               36-314
               

               Cow position:
               chrX:30543399-30543116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               192
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               72, 26
               

               Conread position:
               36-314
               

               Cow position:
               chrX:41526633-41526359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 103
               

               Conread position:
               36-322
               

               Cow position:
               chrX:6407437-6407717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               198
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               54, 110
               

               Conread position:
               37-310
               

               Cow position:
               chrX:37910335-37910614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               190
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               67, 104
               

               Conread position:
               37-311
               

               Cow position:
               chrX:8797141-8797416 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               196
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               29, 115
               

               Conread position:
               38-322
               

               Cow position:
               chrX:45670117-45670398 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               202
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               61, 25
               

               Conread position:
               42-275
               

               Cow position:
               chrX:37574745-37574971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               53, 95
               

               Conread position:
               42-322
               

               Cow position:
               chrX:30133428-30133147 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               200
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               16, 107
               

               Conread position:
               43-302
               

               Cow position:
               chrX:34376842-34377100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               188
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               48, 97
               

               Conread position:
               45-322
               

               Cow position:
               chrX:24365930-24365649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               190
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               14, 109
               

               Conread position:
               46-298
               

               Cow position:
               chrX:34313927-34314178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               193
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               59, 104
               

               Conread position:
               46-311
               

               Cow position:
               chrX:16348672-16348404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               187
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               19, 100
               

               Conread position:
               46-322
               

               Cow position:
               chrX:31489420-31489694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               62, 17
               

               Conread position:
               47-278
               

               Cow position:
               chrX:11851770-11851545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               163, 61
               

               Conread position:
               51-322
               

               Cow position:
               chrX:9252256-9251990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               202
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               57, 9
               

               Conread position:
               52-301
               

               Cow position:
               chrX:34837150-34836909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               56, 34
               

               Conread position:
               54-322
               

               Cow position:
               chrX:47345240-47345503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               187
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               64, 81
               

               Conread position:
               56-275
               

               Cow position:
               chrX:45648781-45649013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               27, 21
               

               Conread position:
               56-322
               

               Cow position:
               chrX:1466069-1466333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               204
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               48, 93
               

               Conread position:
               57-301
               

               Cow position:
               chrX:29050156-29050405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               189
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               51, 96
               

               Conread position:
               57-302
               

               Cow position:
               chrX:918818-918557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               47, 84
               

               Conread position:
               64-305
               

               Cow position:
               chrX:23113194-23113445 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               28, 225
               

               Conread position:
               64-322
               

               Cow position:
               chrX:42855371-42855636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               65-293
               

               Cow position:
               chrX:41192625-41192853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               177
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 81
               

               Conread position:
               72-301
               

               Cow position:
               chrX:1088212-1087986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               45, 66
               

               Conread position:
               74-298
               

               Cow position:
               chrX:19469574-19469354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               34, 61
               

               Conread position:
               74-301
               

               Cow position:
               chrX:31627052-31626820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               21, 131
               

               Conread position:
               84-322
               

               Cow position:
               chrX:40108574-40108340 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               85, 57
               

               Conread position:
               85-293
               

               Cow position:
               chrX:4153092-4152882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               154
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               86-301
               

               Cow position:
               chrX:30840482-30840703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               158
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               22, 58
               

               Conread position:
               90-322
               

               Cow position:
               chrX:17956646-17956862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               167
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               93-276
               

               Cow position:
               chrX:45383104-45382914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               138
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               44, 22
               

               Conread position:
               94-282
               

               Cow position:
               chrX:36514940-36514754 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               131
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               122, 41
               

               Conread position:
               94-298
               

               Cow position:
               chrX:27511381-27511582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               143
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               20, 44
               

               Conread position:
               94-302
               

               Cow position:
               chrX:22393032-22392827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               163
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               94-306
               

               Cow position:
               chrX:5134429-5134634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               134, 35
               

               Conread position:
               94-309
               

               Cow position:
               chrX:32978123-32977916 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               161
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               179, 42
               

               Conread position:
               94-317
               

               Cow position:
               chrX:18273104-18272884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               179, 43
               

               Conread position:
               94-322
               

               Cow position:
               chrX:22115362-22115142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               180
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 34
               

               Conread position:
               94-322
               

               Cow position:
               chrX:31250341-31250562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               94-322
               

               Cow position:
               chrX:40680565-40680788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               105, 47
               

               Conread position:
               95-322
               

               Cow position:
               chrX:39220034-39220259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               165
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               32, 44
               

               Conread position:
               96-322
               

               Cow position:
               chrX:6599828-6599601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               181
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               211, 37
               

               Conread position:
               99-322
               

               Cow position:
               chrX:46532541-46532317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               50, 7
               

               Conread position:
               101-276
               

               Cow position:
               chrX:12082364-12082192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               101-297
               

               Cow position:
               chrX:11326139-11325946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               101-311
               

               Cow position:
               chrX:5135564-5135353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               157
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               129, 46
               

               Conread position:
               101-322
               

               Cow position:
               chrX:19394513-19394728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               165
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               104-272
               

               Cow position:
               chrX:29585084-29585247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               136
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               104-298
               

               Cow position:
               chrX:47061358-47061548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               104-308
               

               Cow position:
               chrX:16984591-16984804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               25, 161
               

               Conread position:
               104-311
               

               Cow position:
               chrX:40532080-40531876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               161
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               104-313
               

               Cow position:
               chrX:24749051-24749253 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               148
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               104-316
               

               Cow position:
               chrX:27306416-27306627 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               203, 33
               

               Conread position:
               104-320
               

               Cow position:
               chrX:35985782-35985991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               105-297
               

               Cow position:
               chrX:4289404-4289596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               82, 35
               

               Conread position:
               106-282
               

               Cow position:
               chrX:29553251-29553423 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               127
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               21, 10
               

               Conread position:
               106-285
               

               Cow position:
               chrX:46429856-46429678 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               139
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               106-304
               

               Cow position:
               chrX:19943271-19943078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               106-304
               

               Cow position:
               chrX:23188811-23188624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               140
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               106-304
               

               Cow position:
               chrX:42893883-42894085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               24, 183
               

               Conread position:
               106-322
               

               Cow position:
               chrX:18964859-18964652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               21, 36
               

               Conread position:
               107-311
               

               Cow position:
               chrX:37129234-37129440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               170, 33
               

               Conread position:
               109-305
               

               Cow position:
               chrX:23498709-23498519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               16, 33
               

               Conread position:
               114-322
               

               Cow position:
               chrX:28940219-28940417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               163
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               15, 48
               

               Conread position:
               119-298
               

               Cow position:
               chrX:25411886-25412059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               128
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               126-320
               

               Cow position:
               chrX:32943097-32942904 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               146
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               38, 15
               

               Conread position:
               127-311
               

               Cow position:
               chrX:36848595-36848410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               43, 86
               

               Conread position:
               130-282
               

               Cow position:
               chrX:4616025-4615873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               125
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               39, 108
               

               Conread position:
               131-298
               

               Cow position:
               chrX:12972666-12972839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               130
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               6, 0
               

               Conread position:
               135-297
               

               Cow position:
               chrX:16836296-16836136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               127
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               11, 75
               

               Conread position:
               135-298
               

               Cow position:
               chrX:46989610-46989451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               123
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               13, 6
               

               Conread position:
               139-322
               

               Cow position:
               chrX:39180239-39180060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               132
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               9, 107
               

               Conread position:
               142-306
               

               Cow position:
               chrX:4559737-4559895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               121
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               144-303
               

               Cow position:
               chrX:2935957-2936115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               122
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               134, 0
               

               Conread position:
               144-318
               

               Cow position:
               chrX:38227107-38226936 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               122
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               145-272
               

               Cow position:
               chrX:25328614-25328488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               128
               

               Alignm identity:
               104
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               145-277
               

               Cow position:
               chrX:46070171-46070035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               104
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               145-285
               

               Cow position:
               chrX:4466968-4467108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               111
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               145-296
               

               Cow position:
               chrX:42479834-42479984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               121
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               139, 0
               

               Conread position:
               145-298
               

               Cow position:
               chrX:29501880-29501730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               119
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               145-302
               

               Cow position:
               chrX:27668957-27668800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               132
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               145-302
               

               Cow position:
               chrX:39290360-39290515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               125, 0
               

               Conread position:
               145-306
               

               Cow position:
               chrX:38587842-38587681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               123
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               145-322
               

               Cow position:
               chrX:24633685-24633867 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               144
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               64, 150
               

               Conread position:
               146-302
               

               Cow position:
               chrX:32208820-32208665 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               112
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               148-306
               

               Cow position:
               chrX:42160627-42160785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               124
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               14, 64
               

               Conread position:
               149-322
               

               Cow position:
               chrX:42836186-42836354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               123
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               135, 0
               

               Conread position:
               150-314
               

               Cow position:
               chrX:41862370-41862533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               119
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               154-322
               

               Cow position:
               chrX:24170719-24170552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               129
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               112, 85
               

               Conread position:
               155-301
               

               Cow position:
               chrX:25788894-25788748 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               109
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               123, 139
               

               Conread position:
               156-298
               

               Cow position:
               chrX:23266427-23266568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               106
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               128, 0
               

               Conread position:
               156-302
               

               Cow position:
               chrX:29467766-29467621 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               107
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               139, 0
               

               Conread position:
               157-322
               

               Cow position:
               chrX:20957251-20957412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               78, 72
               

               Conread position:
               158-322
               

               Cow position:
               chrX:38301823-38301987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               120
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               161-311
               

               Cow position:
               chrX:7513505-7513656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               113
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               135, 48
               

               Conread position:
               162-314
               

               Cow position:
               chrX:20583683-20583836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               118
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               163-287
               

               Cow position:
               chrX:41164633-41164754 (view UCSC Genome Browser custom track)
               

               Alignm length:
               125
               

               Alignm identity:
               104
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               163-302
               

               Cow position:
               chrX:31479990-31480127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               111
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               112, 53
               

               Conread position:
               163-308
               

               Cow position:
               chrX:34508563-34508708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               112
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               163-322
               

               Cow position:
               chrX:47079646-47079801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               124
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               74, 66
               

               Conread position:
               167-294
               

               Cow position:
               chrX:5026279-5026407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               129
               

               Alignm identity:
               103
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               121, 0
               

               Conread position:
               167-311
               

               Cow position:
               chrX:28098349-28098493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               107
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               111, 142
               

               Conread position:
               168-301
               

               Cow position:
               chrX:32866899-32867032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               107
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               168-305
               

               Cow position:
               chrX:37062561-37062423 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               102
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               102, 0
               

               Conread position:
               169-311
               

               Cow position:
               chrX:41939849-41939991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               108
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               109, 5
               

               Conread position:
               170-277
               

               Cow position:
               chrX:21573599-21573705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               108
               

               Alignm identity:
               88
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               170-313
               

               Cow position:
               chrX:23359085-23358945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               116
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               173-309
               

               Cow position:
               chrX:40046546-40046413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               107
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               58, 36
               

               Conread position:
               173-322
               

               Cow position:
               chrX:46079114-46079265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               116
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               101, 84
               

               Conread position:
               174-276
               

               Cow position:
               chrX:20340613-20340511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               103
               

               Alignm identity:
               84
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               174-277
               

               Cow position:
               chrX:4942228-4942125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               104
               

               Alignm identity:
               86
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               174-311
               

               Cow position:
               chrX:16481540-16481403 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               104
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               37, 23
               

               Conread position:
               174-322
               

               Cow position:
               chrX:8326934-8327078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               110
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               110, 0
               

               Conread position:
               175-322
               

               Cow position:
               chrX:29688144-29688002 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               112
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               86, 0
               

               Conread position:
               181-314
               

               Cow position:
               chrX:41858845-41858711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               100
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               181-321
               

               Cow position:
               chrX:6480559-6480423 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               110
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               10, 21
               

               Conread position:
               185-322
               

               Cow position:
               chrX:31983544-31983405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               109
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               121, 0
               

               Conread position:
               186-314
               

               Cow position:
               chrX:23471824-23471695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               100
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               201-314
               

               Cow position:
               chrX:17525810-17525701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               114
               

               Alignm identity:
               92
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               83, 0
               
Show alignments to all cow chromosomes.
Conread position:	1-275
Cow position:	chrX:45845955-45846232 (view UCSC Genome Browser custom track)
Alignm length:	283
Alignm identity:	202
Alignm E-value:	3e-39
Alignm gaps (pig, cow):	106, 11
Conread position:	1-302
Cow position:	chrX:15007299-15006990 (view UCSC Genome Browser custom track)
Alignm length:	315
Alignm identity:	207
Alignm E-value:	6e-24
Alignm gaps (pig, cow):	31, 22
Conread position:	1-308
Cow position:	chrX:27772110-27771804 (view UCSC Genome Browser custom track)
Alignm length:	317
Alignm identity:	206
Alignm E-value:	5e-23
Alignm gaps (pig, cow):	31, 22
Conread position:	2-295
Cow position:	chrX:44396873-44397161 (view UCSC Genome Browser custom track)
Alignm length:	303
Alignm identity:	209
Alignm E-value:	3e-30
Alignm gaps (pig, cow):	106, 62
Conread position:	2-311
Cow position:	chrX:5872165-5872484 (view UCSC Genome Browser custom track)
Alignm length:	326
Alignm identity:	215
Alignm E-value:	8e-27
Alignm gaps (pig, cow):	23, 155
Conread position:	4-274
Cow position:	chrX:35224151-35224426 (view UCSC Genome Browser custom track)
Alignm length:	281
Alignm identity:	212
Alignm E-value:	0
Alignm gaps (pig, cow):	9, 45
Conread position:	6-281
Cow position:	chrX:20584185-20584465 (view UCSC Genome Browser custom track)
Alignm length:	284
Alignm identity:	220
Alignm E-value:	0
Alignm gaps (pig, cow):	96, 23
Conread position:	6-287
Cow position:	chrX:20801634-20801913 (view UCSC Genome Browser custom track)
Alignm length:	284
Alignm identity:	180
Alignm E-value:	1e-22
Alignm gaps (pig, cow):	102, 15
Conread position:	6-300
Cow position:	chrX:37781251-37780954 (view UCSC Genome Browser custom track)
Alignm length:	303
Alignm identity:	221
Alignm E-value:	0
Alignm gaps (pig, cow):	102, 6
Conread position:	6-314
Cow position:	chrX:27432051-27431748 (view UCSC Genome Browser custom track)
Alignm length:	310
Alignm identity:	218
Alignm E-value:	5.60519e-45
Alignm gaps (pig, cow):	102, 6
Conread position:	6-322
Cow position:	chrX:28866140-28865831 (view UCSC Genome Browser custom track)
Alignm length:	321
Alignm identity:	213
Alignm E-value:	3e-29
Alignm gaps (pig, cow):	98, 17
Conread position:	8-307
Cow position:	chrX:32623447-32623735 (view UCSC Genome Browser custom track)
Alignm length:	302
Alignm identity:	197
Alignm E-value:	6e-24
Alignm gaps (pig, cow):	117, 5
Conread position:	9-302
Cow position:	chrX:14973879-14973588 (view UCSC Genome Browser custom track)
Alignm length:	303
Alignm identity:	204
Alignm E-value:	8e-27
Alignm gaps (pig, cow):	51, 26
Conread position:	9-308
Cow position:	chrX:878518-878216 (view UCSC Genome Browser custom track)
Alignm length:	304
Alignm identity:	222
Alignm E-value:	0
Alignm gaps (pig, cow):	5, 132
Conread position:	9-321
Cow position:	chrX:34532383-34532690 (view UCSC Genome Browser custom track)
Alignm length:	319
Alignm identity:	238
Alignm E-value:	0
Alignm gaps (pig, cow):	99, 14
Conread position:	10-253
Cow position:	chrX:27680261-27680507 (view UCSC Genome Browser custom track)
Alignm length:	248
Alignm identity:	168
Alignm E-value:	3e-29
Alignm gaps (pig, cow):	87, 131
Conread position:	10-260
Cow position:	chrX:26625807-26625555 (view UCSC Genome Browser custom track)
Alignm length:	256
Alignm identity:	181
Alignm E-value:	6e-35
Alignm gaps (pig, cow):	88, 26
Conread position:	10-295
Cow position:	chrX:31442962-31442679 (view UCSC Genome Browser custom track)
Alignm length:	290
Alignm identity:	205
Alignm E-value:	3e-40
Alignm gaps (pig, cow):	22, 13
Conread position:	10-311
Cow position:	chrX:18695060-18694766 (view UCSC Genome Browser custom track)
Alignm length:	308
Alignm identity:	203
Alignm E-value:	6e-24
Alignm gaps (pig, cow):	94, 13
Conread position:	10-316
Cow position:	chrX:28878308-28877999 (view UCSC Genome Browser custom track)
Alignm length:	315
Alignm identity:	211
Alignm E-value:	1e-32
Alignm gaps (pig, cow):	19, 41