Cow genome map
| Conread name: | rebs29c_p4.y1 |
| Conread position: | 5-463 |
| Cow position: | chr18:56267626-56267167 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 281 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 11, 41 |
| Conread position: | 10-503 |
| Cow position: | chr18:56391501-56391014 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 43 |
| Conread position: | 20-530 |
| Cow position: | chr18:54668848-54668331 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 35 |
| Conread position: | 21-529 |
| Cow position: | chr18:56391580-56391071 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 24 |
| Conread position: | 24-463 |
| Cow position: | chr18:55497519-55497077 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 72 |
| Conread position: | 28-514 |
| Cow position: | chr18:47846578-47846089 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 293 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 52, 203 |
| Conread position: | 45-503 |
| Cow position: | chr18:56391640-56391182 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 38 |
| Conread position: | 67-504 |
| Cow position: | chr18:56391279-56390845 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 15 |
| Conread position: | 74-379 |
| Cow position: | chr18:22843611-22843308 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 30, 15 |
| Conread position: | 75-457 |
| Cow position: | chr18:22844042-22843656 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 15, 31 |
| Conread position: | 83-463 |
| Cow position: | chr18:22844203-22843821 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 74, 11 |
| Conread position: | 84-507 |
| Cow position: | chr18:55497624-55497201 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 220 |
| Conread position: | 91-463 |
| Cow position: | chr18:22844364-22843989 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 232 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 39, 54 |
| Conread position: | 92-383 |
| Cow position: | chr18:53635702-53635411 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 129, 123 |
| Conread position: | 92-423 |
| Cow position: | chr18:56329173-56328842 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 34, 29 |
| Conread position: | 92-432 |
| Cow position: | chr18:56391173-56390833 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 219 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 45, 38 |
| Conread position: | 92-445 |
| Cow position: | chr18:55497364-55497010 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 233 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 138, 146 |
| Conread position: | 92-462 |
| Cow position: | chr18:49033124-49032755 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 304, 295 |
| Conread position: | 92-462 |
| Cow position: | chr18:53610125-53609755 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 228, 222 |
| Conread position: | 92-462 |
| Cow position: | chr18:56329929-56329560 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 122, 137 |
| Conread position: | 92-463 |
| Cow position: | chr18:49032620-49032249 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 302, 295 |
| Conread position: | 92-463 |
| Cow position: | chr18:53610209-53609838 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 234 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 118, 110 |
| Conread position: | 92-463 |
| Cow position: | chr18:53635786-53635415 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 233 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 215, 219 |
| Conread position: | 92-463 |
| Cow position: | chr18:56316223-56316594 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 41, 50 |
| Conread position: | 92-463 |
| Cow position: | chr18:56329341-56328970 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 200, 194 |
| Conread position: | 92-464 |
| Cow position: | chr18:55497532-55497160 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 39 |
| Conread position: | 92-465 |
| Cow position: | chr18:52012269-52011896 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 37, 53 |
| Conread position: | 92-465 |
| Cow position: | chr18:56316643-56317016 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 329, 340 |
| Conread position: | 92-465 |
| Cow position: | chr18:56329761-56329388 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 234 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 118, 110 |
| Conread position: | 92-466 |
| Cow position: | chr18:53610377-53610003 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 238 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 40, 53 |
| Conread position: | 92-467 |
| Cow position: | chr18:53635534-53635159 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 92-467 |
| Cow position: | chr18:56128631-56129006 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 117, 110 |
| Conread position: | 92-469 |
| Cow position: | chr18:53610461-53610084 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 34, 29 |
| Conread position: | 92-470 |
| Cow position: | chr18:52012017-52011639 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 45, 37 |
| Conread position: | 92-474 |
| Cow position: | chr18:56128463-56128844 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 240 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 39, 51 |
| Conread position: | 92-501 |
| Cow position: | chr18:53635450-53635041 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 303, 296 |
| Conread position: | 92-503 |
| Cow position: | chr18:22844279-22843865 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 57, 62 |
| Conread position: | 92-503 |
| Cow position: | chr18:42724414-42724003 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 256 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 53, 41 |
| Conread position: | 92-503 |
| Cow position: | chr18:49033292-49032881 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 255 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 225, 206 |
| Conread position: | 92-503 |
| Cow position: | chr18:56128295-56128706 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 246 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 268, 278 |
| Conread position: | 92-503 |
| Cow position: | chr18:56329425-56329014 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 56, 62 |
| Conread position: | 92-503 |
| Cow position: | chr18:56329509-56329098 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 251 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 293, 313 |
| Conread position: | 92-503 |
| Cow position: | chr18:56329677-56329266 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 254 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 296, 289 |
| Conread position: | 92-503 |
| Cow position: | chr18:56329845-56329434 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 253 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 302, 293 |
| Conread position: | 92-507 |
| Cow position: | chr18:53635870-53635455 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 132, 110 |
| Conread position: | 92-507 |
| Cow position: | chr18:56128127-56128542 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 47, 62 |
| Conread position: | 92-507 |
| Cow position: | chr18:56330181-56329766 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 251 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 52, 48 |
| Conread position: | 92-509 |
| Cow position: | chr18:42724498-42724081 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 152, 157 |
| Conread position: | 92-509 |
| Cow position: | chr18:49033208-49032791 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 258 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 163, 152 |
| Conread position: | 92-523 |
| Cow position: | chr18:56316559-56316987 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 268 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 417, 0 |
| Conread position: | 94-360 |
| Cow position: | chr18:56391894-56391631 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 242, 0 |
| Conread position: | 94-422 |
| Cow position: | chr18:47846341-47846013 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 36, 49 |
| Conread position: | 94-502 |
| Cow position: | chr18:47846425-47846017 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 265, 269 |
| Conread position: | 94-503 |
| Cow position: | chr18:56329591-56329182 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 253 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 300, 293 |
| Conread position: | 94-505 |
| Cow position: | chr18:47846593-47846182 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 256 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 67, 72 |
| Conread position: | 95-462 |
| Cow position: | chr18:47846676-47846310 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 45, 57 |
| Conread position: | 97-442 |
| Cow position: | chr18:55497695-55497350 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 303, 290 |
| Conread position: | 108-457 |
| Cow position: | chr18:56316071-56316420 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 21, 26 |
| Conread position: | 109-446 |
| Cow position: | chr18:56391963-56391629 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 276, 284 |
| Conread position: | 110-463 |
| Cow position: | chr18:52012335-52011982 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 110-493 |
| Cow position: | chr18:50281950-50282333 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 364, 370 |
| Conread position: | 140-467 |
| Cow position: | chr18:44818526-44818851 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 90, 42 |
| Conread position: | 145-457 |
| Cow position: | chr18:49033323-49033011 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 162, 177 |
| Conread position: | 151-463 |
| Cow position: | chr18:56128438-56128750 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 156, 160 |
| Conread position: | 151-499 |
| Cow position: | chr18:44817890-44818238 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 161, 147 |
| Conread position: | 152-489 |
| Cow position: | chr18:50281824-50282164 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 308, 0 |
| Conread position: | 152-531 |
| Cow position: | chr18:47846703-47846323 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 78, 83 |
| Conread position: | 159-507 |
| Cow position: | chr18:53610480-53610130 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 20, 48 |
| Conread position: | 162-463 |
| Cow position: | chr18:55497714-55497413 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 150, 142 |
| Conread position: | 172-463 |
| Cow position: | chr18:22844028-22843737 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 117, 149 |
| Conread position: | 179-506 |
| Cow position: | chr18:22843591-22843265 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 77, 9 |
| Conread position: | 179-529 |
| Cow position: | chr18:56391590-56391239 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 214 |
| Conread position: | 181-424 |
| Cow position: | chr18:54687753-54687996 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 36, 44 |
| Conread position: | 188-553 |
| Cow position: | chr18:56391968-56391600 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 362 |
| Conread position: | 194-495 |
| Cow position: | chr18:49033358-49033057 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 202, 188 |
| Conread position: | 236-503 |
| Cow position: | chr18:50281824-50282091 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 65, 77 |
| Conread position: | 247-501 |
| Cow position: | chr18:44817818-44818072 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 137, 145 |
| Conread position: | 250-463 |
| Cow position: | chr18:54687738-54687951 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 50, 60 |
| Conread position: | 250-507 |
| Cow position: | chr18:55497710-55497453 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 146, 138 |
| Conread position: | 254-523 |
| Cow position: | chr18:54670267-54669994 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 13, 6 |
| Conread position: | 262-462 |
| Cow position: | chr18:56128129-56128329 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 281-445 |
| Cow position: | chr18:54664112-54664276 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 305-502 |
| Cow position: | chr18:54669622-54669425 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.