Cow genome map
| Conread name: | rebs29c_p4.y1 |
| Conread position: | 4-502 |
| Cow position: | chr25:3675905-3676405 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 362 |
| Conread position: | 8-502 |
| Cow position: | chr25:33529977-33530474 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 32 |
| Conread position: | 16-463 |
| Cow position: | chr25:33530324-33530771 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 295 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 45, 72 |
| Conread position: | 47-503 |
| Cow position: | chr25:33530105-33530559 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 276 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 28, 10 |
| Conread position: | 48-430 |
| Cow position: | chr25:3636349-3635969 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 239 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 8, 38 |
| Conread position: | 55-519 |
| Cow position: | chr25:3664068-3664528 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 330, 27 |
| Conread position: | 68-504 |
| Cow position: | chr25:24385098-24384666 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 269 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 58, 14 |
| Conread position: | 75-348 |
| Cow position: | chr25:4657308-4657038 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 75-465 |
| Cow position: | chr25:3636405-3636018 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 55, 7 |
| Conread position: | 75-470 |
| Cow position: | chr25:3636489-3636097 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 285, 7 |
| Conread position: | 76-451 |
| Cow position: | chr25:25652174-25652550 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 307 |
| Conread position: | 76-463 |
| Cow position: | chr25:25652762-25653150 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 144 |
| Conread position: | 76-466 |
| Cow position: | chr25:3664001-3664392 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 307 |
| Conread position: | 76-495 |
| Cow position: | chr25:25652426-25652846 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 76-503 |
| Cow position: | chr25:25652342-25652770 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 77-411 |
| Cow position: | chr25:25653019-25653347 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 230 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 244, 8 |
| Conread position: | 77-466 |
| Cow position: | chr25:34473495-34473881 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 144 |
| Conread position: | 79-529 |
| Cow position: | chr25:33506736-33507189 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 292 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 16, 438 |
| Conread position: | 81-503 |
| Cow position: | chr25:24385425-24385002 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 276 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 19, 41 |
| Conread position: | 83-529 |
| Cow position: | chr25:3663925-3664372 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 382, 386 |
| Conread position: | 84-422 |
| Cow position: | chr25:3664262-3664600 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 224 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 89-386 |
| Cow position: | chr25:326498-326794 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 91-466 |
| Cow position: | chr25:33529100-33529475 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 240 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 294, 312 |
| Conread position: | 92-313 |
| Cow position: | chr25:34733922-34733701 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 92-380 |
| Cow position: | chr25:22236000-22236288 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 92-406 |
| Cow position: | chr25:33530484-33530798 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 203 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 206, 229 |
| Conread position: | 92-462 |
| Cow position: | chr25:3664186-3664556 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 242 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 209, 214 |
| Conread position: | 92-463 |
| Cow position: | chr25:36844617-36844255 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 270, 0 |
| Conread position: | 92-465 |
| Cow position: | chr25:34763000-34763370 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 233 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 290, 125 |
| Conread position: | 92-466 |
| Cow position: | chr25:4657462-4657088 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 212 |
| Conread position: | 92-466 |
| Cow position: | chr25:33157386-33157012 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 225, 210 |
| Conread position: | 92-470 |
| Cow position: | chr25:33157218-33156840 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 56, 60 |
| Conread position: | 92-503 |
| Cow position: | chr25:25652695-25653106 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 206 |
| Conread position: | 92-507 |
| Cow position: | chr25:24385161-24384745 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 267 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 38, 58 |
| Conread position: | 92-507 |
| Cow position: | chr25:25652611-25653026 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 211 |
| Conread position: | 92-507 |
| Cow position: | chr25:34473594-34474006 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 265 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 271, 0 |
| Conread position: | 92-507 |
| Cow position: | chr25:34763249-34763661 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 120, 127 |
| Conread position: | 92-509 |
| Cow position: | chr25:23267493-23267083 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 256 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 39, 62 |
| Conread position: | 92-519 |
| Cow position: | chr25:25652527-25652953 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 304, 295 |
| Conread position: | 92-548 |
| Cow position: | chr25:33530316-33530768 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 289 |
| Conread position: | 94-432 |
| Cow position: | chr25:4657376-4657038 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 227, 220 |
| Conread position: | 94-457 |
| Cow position: | chr25:22941372-22941009 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 40, 55 |
| Conread position: | 94-463 |
| Cow position: | chr25:25652949-25653318 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 94-463 |
| Cow position: | chr25:34473680-34474046 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 241 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 136, 144 |
| Conread position: | 94-471 |
| Cow position: | chr25:25652277-25652654 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 204 |
| Conread position: | 94-507 |
| Cow position: | chr25:3636557-3636144 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 42, 37 |
| Conread position: | 94-507 |
| Cow position: | chr25:34762918-34763328 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 252 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 120, 127 |
| Conread position: | 95-466 |
| Cow position: | chr25:25652866-25653237 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 118 |
| Conread position: | 102-518 |
| Cow position: | chr25:33529027-33529442 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 264 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 403, 0 |
| Conread position: | 110-407 |
| Cow position: | chr25:34733988-34733691 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 20, 27 |
| Conread position: | 113-507 |
| Cow position: | chr25:22235853-22236247 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 373, 359 |
| Conread position: | 122-503 |
| Cow position: | chr25:33157524-33157143 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 274, 266 |
| Conread position: | 140-466 |
| Cow position: | chr25:34763129-34763455 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 254, 245 |
| Conread position: | 143-465 |
| Cow position: | chr25:22940545-22940224 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 116, 11 |
| Conread position: | 164-463 |
| Cow position: | chr25:326486-326787 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 168-463 |
| Cow position: | chr25:22941382-22941087 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 51, 65 |
| Conread position: | 171-531 |
| Cow position: | chr25:33530059-33530418 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 334, 0 |
| Conread position: | 173-503 |
| Cow position: | chr25:25652188-25652518 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 223 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 176-503 |
| Cow position: | chr25:3636559-3636232 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 178-470 |
| Cow position: | chr25:4657460-4657168 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 143, 126 |
| Conread position: | 178-507 |
| Cow position: | chr25:34473512-34473841 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 114, 129 |
| Conread position: | 194-463 |
| Cow position: | chr25:34733988-34733719 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 21, 27 |
| Conread position: | 245-509 |
| Cow position: | chr25:34734022-34733757 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 8, 53 |
| Conread position: | 252-467 |
| Cow position: | chr25:25652183-25652398 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 136, 130 |
| Conread position: | 252-503 |
| Cow position: | chr25:3675986-3676238 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 260-463 |
| Cow position: | chr25:3636559-3636356 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 310-463 |
| Cow position: | chr25:33506717-33506870 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 82, 77 |
Show alignments to all cow chromosomes.