Cow genome map
| Conread name: | rebs31c_k1.y1 |
| Conread position: | 1-356 |
| Cow position: | chr1:1827553-1827204 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 100 |
| Conread position: | 1-384 |
| Cow position: | chr1:73763345-73762960 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 166 |
| Conread position: | 1-592 |
| Cow position: | chr1:53422139-53422758 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 217 |
| Conread position: | 1-592 |
| Cow position: | chr1:86704400-86705006 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 166 |
| Conread position: | 1-600 |
| Cow position: | chr1:29364656-29365272 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 209 |
| Conread position: | 1-601 |
| Cow position: | chr1:90606607-90606005 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 167 |
| Conread position: | 1-607 |
| Cow position: | chr1:41518563-41517959 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 102 |
| Conread position: | 1-607 |
| Cow position: | chr1:86612356-86612967 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 102 |
| Conread position: | 3-552 |
| Cow position: | chr1:52918201-52917640 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 12 |
| Conread position: | 3-592 |
| Cow position: | chr1:88267852-88267272 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 75 |
| Conread position: | 9-607 |
| Cow position: | chr1:29949544-29948944 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 285, 129 |
| Conread position: | 10-350 |
| Cow position: | chr1:58198132-58197780 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 210 |
| Conread position: | 10-396 |
| Cow position: | chr1:4275886-4276267 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 84 |
| Conread position: | 10-474 |
| Cow position: | chr1:62100546-62100082 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 73 |
| Conread position: | 10-589 |
| Cow position: | chr1:57695395-57694785 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 63 |
| Conread position: | 10-592 |
| Cow position: | chr1:40510980-40510399 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 21 |
| Conread position: | 11-447 |
| Cow position: | chr1:65388543-65388995 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 169 |
| Conread position: | 11-471 |
| Cow position: | chr1:8827323-8827799 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 195 |
| Conread position: | 11-549 |
| Cow position: | chr1:30693341-30693887 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 81 |
| Conread position: | 11-591 |
| Cow position: | chr1:74284413-74283813 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 92 |
| Conread position: | 11-592 |
| Cow position: | chr1:38477573-38478161 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 196 |
| Conread position: | 11-592 |
| Cow position: | chr1:68603366-68602769 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 46 |
| Conread position: | 11-600 |
| Cow position: | chr1:93856781-93857386 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 153 |
| Conread position: | 20-606 |
| Cow position: | chr1:99108968-99108363 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 173 |
| Conread position: | 21-339 |
| Cow position: | chr1:30439116-30439438 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 194 |
| Conread position: | 21-559 |
| Cow position: | chr1:77464379-77464902 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 22 |
| Conread position: | 21-592 |
| Cow position: | chr1:5504208-5504796 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 185 |
| Conread position: | 21-592 |
| Cow position: | chr1:40533759-40533214 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 61 |
| Conread position: | 21-607 |
| Cow position: | chr1:36539783-36540380 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 37 |
| Conread position: | 22-354 |
| Cow position: | chr1:82368020-82368356 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 141 |
| Conread position: | 22-384 |
| Cow position: | chr1:99017787-99017428 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 119 |
| Conread position: | 22-593 |
| Cow position: | chr1:31192111-31191552 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 48 |
| Conread position: | 24-380 |
| Cow position: | chr1:23054695-23055052 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 156 |
| Conread position: | 40-574 |
| Cow position: | chr1:92008218-92007679 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 109 |
| Conread position: | 42-562 |
| Cow position: | chr1:28568414-28567886 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 87 |
| Conread position: | 104-544 |
| Cow position: | chr1:79913305-79913753 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 96 |
| Conread position: | 105-606 |
| Cow position: | chr1:53310285-53309778 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 105 |
| Conread position: | 107-600 |
| Cow position: | chr1:46838154-46838662 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 100 |
| Conread position: | 115-592 |
| Cow position: | chr1:61537635-61537142 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 83 |
| Conread position: | 131-396 |
| Cow position: | chr1:93517275-93517546 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 203 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 19, 119 |
| Conread position: | 153-600 |
| Cow position: | chr1:70069064-70069529 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 53 |
| Conread position: | 166-607 |
| Cow position: | chr1:39481525-39481064 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 40 |
| Conread position: | 183-356 |
| Cow position: | chr1:87967627-87967457 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 113, 22 |
| Conread position: | 194-607 |
| Cow position: | chr1:48827114-48827547 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 12 |
| Conread position: | 198-607 |
| Cow position: | chr1:82863263-82863690 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 9 |
| Conread position: | 199-607 |
| Cow position: | chr1:44949721-44950134 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 22, 7 |
| Conread position: | 225-579 |
| Cow position: | chr1:11017872-11018237 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 212 |
| Conread position: | 245-527 |
| Cow position: | chr1:53208867-53208572 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 49, 104 |
| Conread position: | 259-591 |
| Cow position: | chr1:42553870-42554198 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 30 |
| Conread position: | 270-592 |
| Cow position: | chr1:70863558-70863890 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 248 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 24, 89 |
| Conread position: | 289-607 |
| Cow position: | chr1:75832577-75832902 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 233 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 17, 68 |
| Conread position: | 292-607 |
| Cow position: | chr1:81374468-81374136 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 65 |
| Conread position: | 310-569 |
| Cow position: | chr1:32629512-32629774 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 101, 45 |
Show alignments to all cow chromosomes.