Cow genome map
| Conread name: | rebs34c_a9.y1 |
| Conread position: | 2-275 |
| Cow position: | chr18:42724214-42723941 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 264, 269 |
| Conread position: | 2-328 |
| Cow position: | chr18:53610429-53610103 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 90, 101 |
| Conread position: | 2-341 |
| Cow position: | chr18:54668741-54668402 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 112, 107 |
| Conread position: | 2-380 |
| Cow position: | chr18:50281964-50282342 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 169, 175 |
| Conread position: | 2-424 |
| Cow position: | chr18:55497584-55497162 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 20, 12 |
| Conread position: | 2-424 |
| Cow position: | chr18:56391393-56390971 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 99 |
| Conread position: | 2-443 |
| Cow position: | chr18:56391309-56390868 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 14 |
| Conread position: | 3-286 |
| Cow position: | chr18:44818593-44818876 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 90, 75 |
| Conread position: | 3-296 |
| Cow position: | chr18:56391947-56391654 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 203 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 113, 106 |
| Conread position: | 3-424 |
| Cow position: | chr18:56329560-56329139 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 265 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 88, 103 |
| Conread position: | 12-400 |
| Cow position: | chr18:56128505-56128892 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 71, 114 |
| Conread position: | 16-262 |
| Cow position: | chr18:53635656-53635410 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 110, 84 |
| Conread position: | 16-424 |
| Cow position: | chr18:56316437-56316845 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 60, 54 |
| Conread position: | 19-424 |
| Cow position: | chr18:54668808-54668403 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 242 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 35, 27 |
| Conread position: | 19-424 |
| Cow position: | chr18:55497651-55497246 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 87, 82 |
| Conread position: | 20-330 |
| Cow position: | chr18:47846545-47846235 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 20-456 |
| Cow position: | chr18:47846461-47846025 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 267 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 419, 408 |
| Conread position: | 21-424 |
| Cow position: | chr18:56391542-56391139 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 22-455 |
| Cow position: | chr18:54668889-54668456 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 257 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 28, 33 |
| Conread position: | 29-361 |
| Cow position: | chr18:56391198-56390866 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 29-369 |
| Cow position: | chr18:53635559-53635219 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 203 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 29-398 |
| Cow position: | chr18:55497389-55497019 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 239 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 54, 59 |
| Conread position: | 29-463 |
| Cow position: | chr18:56391619-56391184 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 276 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 38, 96 |
| Conread position: | 30-424 |
| Cow position: | chr18:47846703-47846309 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 248 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 97, 79 |
| Conread position: | 36-359 |
| Cow position: | chr18:42724516-42724193 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 36-405 |
| Cow position: | chr18:56329191-56328823 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 166, 156 |
| Conread position: | 36-424 |
| Cow position: | chr18:56329695-56329307 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 147, 153 |
| Conread position: | 37-275 |
| Cow position: | chr18:56267387-56267149 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 37-346 |
| Cow position: | chr18:49033141-49032832 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 37-424 |
| Cow position: | chr18:56329610-56329223 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 365, 346 |
| Conread position: | 40-305 |
| Cow position: | chr18:56391103-56390838 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 40-352 |
| Cow position: | chr18:49033222-49032910 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 40-362 |
| Cow position: | chr18:53635716-53635394 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 40-381 |
| Cow position: | chr18:53610307-53609966 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 40-387 |
| Cow position: | chr18:56267468-56267121 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 43, 48 |
| Conread position: | 40-388 |
| Cow position: | chr18:52012283-52011935 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 41-388 |
| Cow position: | chr18:49033053-49032706 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 301, 290 |
| Conread position: | 41-388 |
| Cow position: | chr18:56329354-56329007 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 139, 150 |
| Conread position: | 42-381 |
| Cow position: | chr18:56128115-56128454 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 42-381 |
| Cow position: | chr18:56329857-56329518 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 42-388 |
| Cow position: | chr18:56329437-56329091 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 228 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 42-406 |
| Cow position: | chr18:53610473-53610111 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 341, 0 |
| Conread position: | 42-424 |
| Cow position: | chr18:55497460-55497078 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 74, 59 |
| Conread position: | 42-424 |
| Cow position: | chr18:56316547-56316929 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 355, 348 |
| Conread position: | 42-424 |
| Cow position: | chr18:56316631-56317013 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 46-306 |
| Cow position: | chr18:22843603-22843343 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 48-381 |
| Cow position: | chr18:49032794-49032461 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 206 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 42, 37 |
| Conread position: | 65-358 |
| Cow position: | chr18:56391969-56391676 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 66-424 |
| Cow position: | chr18:42724570-42724212 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 332, 337 |
| Conread position: | 83-468 |
| Cow position: | chr18:46317254-46316871 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 229 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 40, 31 |
| Conread position: | 98-463 |
| Cow position: | chr18:56267494-56267129 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 338, 326 |
| Conread position: | 101-342 |
| Cow position: | chr18:22844396-22844159 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 105-380 |
| Cow position: | chr18:44818611-44818886 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 166, 153 |
| Conread position: | 105-395 |
| Cow position: | chr18:54664058-54664349 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 10, 25 |
| Conread position: | 113-459 |
| Cow position: | chr18:50281907-50282253 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 217, 230 |
| Conread position: | 114-381 |
| Cow position: | chr18:44817891-44818158 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 135-388 |
| Cow position: | chr18:49033295-49033042 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 236, 241 |
| Conread position: | 135-424 |
| Cow position: | chr18:49033211-49032922 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 143-374 |
| Cow position: | chr18:54687753-54687984 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 150-424 |
| Cow position: | chr18:55497688-55497414 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 210, 229 |
| Conread position: | 156-367 |
| Cow position: | chr18:50083810-50084021 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 156-406 |
| Cow position: | chr18:53635684-53635436 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 227, 0 |
| Conread position: | 156-406 |
| Cow position: | chr18:56128481-56128729 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 227, 0 |
Show alignments to all cow chromosomes.