Cow genome map
| Conread name: | reye1630b_k12r1.y1 |
| Conread position: | 168-339 |
| Cow position: | chr6:18961420-18961590 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 178-338 |
| Cow position: | chr6:36493454-36493622 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 178-339 |
| Cow position: | chr6:23465947-23466103 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 179-325 |
| Cow position: | chr6:59603123-59603271 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 179-339 |
| Cow position: | chr6:1499728-1499566 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 73, 63 |
| Conread position: | 179-339 |
| Cow position: | chr6:20097874-20098038 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 179-339 |
| Cow position: | chr6:31535484-31535641 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 87, 138 |
| Conread position: | 180-308 |
| Cow position: | chr6:24962229-24962099 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 180-308 |
| Cow position: | chr6:28976956-28977087 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 79, 71 |
| Conread position: | 180-309 |
| Cow position: | chr6:5609363-5609490 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 180-314 |
| Cow position: | chr6:7128319-7128456 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 180-327 |
| Cow position: | chr6:1944797-1944649 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 80, 32 |
| Conread position: | 180-327 |
| Cow position: | chr6:23696084-23695932 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 180-327 |
| Cow position: | chr6:67615346-67615493 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 180-332 |
| Cow position: | chr6:15022463-15022615 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 35, 21 |
| Conread position: | 180-332 |
| Cow position: | chr6:61608596-61608444 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 180-333 |
| Cow position: | chr6:65871121-65870962 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 180-334 |
| Cow position: | chr6:66375249-66375399 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 180-335 |
| Cow position: | chr6:11192380-11192537 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 180-337 |
| Cow position: | chr6:61524121-61524273 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 83, 108 |
| Conread position: | 180-338 |
| Cow position: | chr6:25615011-25615177 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 180-339 |
| Cow position: | chr6:694067-694221 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 180-339 |
| Cow position: | chr6:4383563-4383412 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 180-339 |
| Cow position: | chr6:17414361-17414522 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 24, 133 |
| Conread position: | 180-339 |
| Cow position: | chr6:19264415-19264570 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 180-339 |
| Cow position: | chr6:32121991-32121837 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 70, 115 |
| Conread position: | 180-339 |
| Cow position: | chr6:32287723-32287564 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 32, 23 |
| Conread position: | 180-339 |
| Cow position: | chr6:52478327-52478488 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 180-339 |
| Cow position: | chr6:54990917-54991077 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 180-339 |
| Cow position: | chr6:58597422-58597578 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 76, 109 |
| Conread position: | 180-339 |
| Cow position: | chr6:61269396-61269236 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 180-341 |
| Cow position: | chr6:63720284-63720119 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 80, 142 |
| Conread position: | 181-339 |
| Cow position: | chr6:37332191-37332033 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 74, 102 |
| Conread position: | 181-339 |
| Cow position: | chr6:47640349-47640507 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 182-339 |
| Cow position: | chr6:37376432-37376591 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 187-339 |
| Cow position: | chr6:26915408-26915256 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 90, 74 |
| Conread position: | 188-326 |
| Cow position: | chr6:60468314-60468176 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 74, 63 |
| Conread position: | 188-336 |
| Cow position: | chr6:29485158-29485019 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 188-339 |
| Cow position: | chr6:13687736-13687887 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 77, 63 |
| Conread position: | 188-339 |
| Cow position: | chr6:15305647-15305507 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 188-339 |
| Cow position: | chr6:16423778-16423626 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 76, 110 |
| Conread position: | 188-339 |
| Cow position: | chr6:21542399-21542246 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 188-339 |
| Cow position: | chr6:48112272-48112125 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 188-339 |
| Cow position: | chr6:51581176-51581327 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 69, 98 |
| Conread position: | 188-339 |
| Cow position: | chr6:60350216-60350369 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 188-341 |
| Cow position: | chr6:47520129-47519974 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 191-339 |
| Cow position: | chr6:46465894-46465749 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 212-327 |
| Cow position: | chr6:18117997-18118114 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 92 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 212-334 |
| Cow position: | chr6:8637330-8637206 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 54, 0 |
Show alignments to all cow chromosomes.