Cow genome map

Conread name: rfcc33b_d9.y1

Conread position: 1-421
Cow position: chr1:78557967-78558404 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 331

Conread position: 1-440
Cow position: chr1:19517896-19517438 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 344

Conread position: 1-462
Cow position: chr1:81362817-81363282 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 50

Conread position: 1-463
Cow position: chr1:71081308-71080838 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 166

Conread position: 1-481
Cow position: chr1:24580940-24581415 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 19

Conread position: 1-547
Cow position: chr1:100421127-100421684 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 20

Conread position: 1-552
Cow position: chr1:20846473-20845904 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 332

Conread position: 1-553
Cow position: chr1:68145431-68144862 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 331

Conread position: 1-554
Cow position: chr1:42054040-42053475 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 25

Conread position: 1-555
Cow position: chr1:71691093-71691664 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 335

Conread position: 1-558
Cow position: chr1:101008321-101007767 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 216

Conread position: 1-563
Cow position: chr1:56718603-56719174 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 162

Conread position: 1-563
Cow position: chr1:90393217-90392638 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 329

Conread position: 1-565
Cow position: chr1:17009192-17008619 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 164

Conread position: 1-565
Cow position: chr1:77748283-77748859 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 116

Conread position: 1-565
Cow position: chr1:83136475-83137055 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 165

Conread position: 1-566
Cow position: chr1:9376839-9376259 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 330

Conread position: 1-572
Cow position: chr1:89742723-89742141 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 191

Conread position: 1-574
Cow position: chr1:13251005-13250418 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 64

Conread position: 1-574
Cow position: chr1:51980511-51981096 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 166

Conread position: 2-547
Cow position: chr1:29915707-29916252 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 100

Conread position: 2-563
Cow position: chr1:90297456-90298021 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 90

Conread position: 3-465
Cow position: chr1:66242523-66242049 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 79

Conread position: 3-552
Cow position: chr1:57391068-57390507 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 50

Conread position: 3-552
Cow position: chr1:99628541-99627968 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 182

Conread position: 3-558
Cow position: chr1:72986997-72987562 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 331

Conread position: 3-573
Cow position: chr1:40061752-40062316 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 25

Conread position: 3-574
Cow position: chr1:8470621-8470033 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 329

Conread position: 5-469
Cow position: chr1:1744023-1743531 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 327
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 33, 97

Conread position: 10-574
Cow position: chr1:33716509-33717090 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 197

Conread position: 20-552
Cow position: chr1:84284262-84284811 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 312

Conread position: 20-562
Cow position: chr1:21092396-21092950 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 15

Conread position: 20-574
Cow position: chr1:53208411-53207828 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 12

Conread position: 27-552
Cow position: chr1:92433331-92433865 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 183

Conread position: 32-565
Cow position: chr1:55137931-55137371 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 303

Conread position: 38-552
Cow position: chr1:75444108-75443570 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 366

Conread position: 43-484
Cow position: chr1:56620213-56619755 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 289

Conread position: 46-488
Cow position: chr1:99792125-99792571 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 38

Conread position: 63-455
Cow position: chr1:75743871-75744277 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 13

Conread position: 69-513
Cow position: chr1:37646912-37646464 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 75

Conread position: 69-543
Cow position: chr1:52564432-52563954 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 271

Conread position: 80-464
Cow position: chr1:23886675-23886274 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 252

Conread position: 80-552
Cow position: chr1:94227187-94226701 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 119

Conread position: 96-552
Cow position: chr1:31498995-31499474 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 87

Conread position: 99-574
Cow position: chr1:53397365-53397856 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 231

Conread position: 111-552
Cow position: chr1:831592-831134 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 221

Conread position: 131-532
Cow position: chr1:55429564-55429157 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 31

Conread position: 131-554
Cow position: chr1:82378206-82378643 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 196

Conread position: 138-554
Cow position: chr1:89349400-89349826 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 117

Conread position: 141-574
Cow position: chr1:71676462-71676028 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 43

Conread position: 144-563
Cow position: chr1:99642900-99642510 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 394, 46

Conread position: 151-552
Cow position: chr1:37310081-37309664 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 192

Conread position: 152-552
Cow position: chr1:43380567-43380181 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 64

Conread position: 154-468
Cow position: chr1:5178424-5178099 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 235
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 15, 46

Conread position: 154-574
Cow position: chr1:54199940-54199519 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 174

Conread position: 155-443
Cow position: chr1:61747719-61747422 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 221
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 61, 169

Conread position: 155-480
Cow position: chr1:83594336-83594001 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 237
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 61, 169

Conread position: 159-566
Cow position: chr1:54639730-54640147 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 166

Conread position: 164-552
Cow position: chr1:22637942-22637549 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 157

Conread position: 168-562
Cow position: chr1:79002502-79002101 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 7

Conread position: 173-552
Cow position: chr1:20385168-20384774 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 152

Conread position: 181-547
Cow position: chr1:3739466-3739839 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 147

Conread position: 203-484
Cow position: chr1:65021290-65021581 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 122

Conread position: 203-547
Cow position: chr1:3963112-3963460 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 7

Conread position: 203-552
Cow position: chr1:1981619-1981263 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 11

Conread position: 203-573
Cow position: chr1:74821941-74822319 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 7

Conread position: 210-558
Cow position: chr1:84812454-84812084 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 266
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 7, 113

Conread position: 214-550
Cow position: chr1:84240407-84240744 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 132

Conread position: 214-552
Cow position: chr1:8402233-8402579 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 109

Conread position: 214-558
Cow position: chr1:29671997-29671671 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 109

Conread position: 214-574
Cow position: chr1:95176436-95176804 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 111

Conread position: 215-569
Cow position: chr1:68818310-68817936 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 269
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 42, 112

Conread position: 217-574
Cow position: chr1:44083570-44083939 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 254
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 45, 100

Conread position: 218-543
Cow position: chr1:4589975-4589645 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 239
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 44, 107

Conread position: 235-552
Cow position: chr1:52496314-52496628 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 255, 78

Conread position: 248-552
Cow position: chr1:36613725-36613428 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 0

Conread position: 256-541
Cow position: chr1:100816100-100816377 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 53

Conread position: 260-442
Cow position: chr1:10064500-10064318 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 130
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 46, 70

Conread position: 260-451
Cow position: chr1:22835937-22836122 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 140
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 48, 0

Conread position: 260-465
Cow position: chr1:32355254-32355056 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 151
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 51, 0

Conread position: 260-518
Cow position: chr1:3556944-3556697 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 189
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 49, 0

Conread position: 260-552
Cow position: chr1:57957296-57957011 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 49

Conread position: 260-552
Cow position: chr1:95637103-95637393 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 53

Conread position: 260-555
Cow position: chr1:4441542-4441256 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 205
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 53, 0

Conread position: 260-555
Cow position: chr1:101822935-101822648 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 51

Conread position: 260-560
Cow position: chr1:73584861-73584548 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 235
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 123, 53

Conread position: 260-565
Cow position: chr1:10119776-10120075 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 260-574
Cow position: chr1:874200-874511 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 53

Conread position: 260-574
Cow position: chr1:89937798-89937491 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 53

Conread position: 261-552
Cow position: chr1:56228814-56229101 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 50

Conread position: 261-574
Cow position: chr1:61350718-61351016 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 0

Conread position: 264-437
Cow position: chr1:57264986-57264820 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 128
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 47, 0

Conread position: 264-573
Cow position: chr1:101551015-101551325 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 0

Conread position: 264-574
Cow position: chr1:11226679-11226377 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 264-574
Cow position: chr1:88970644-88970928 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 231
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 94, 49

Conread position: 264-574
Cow position: chr1:97075672-97075368 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 47

Conread position: 266-558
Cow position: chr1:55260863-55260578 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 42

Show alignments to all cow chromosomes.