Cow genome map

Conread name: rfcc33b_d9.y1

Conread position: 1-455
Cow position: chr10:23935300-23935766 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 31

Conread position: 1-531
Cow position: chr10:47772986-47773529 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 165

Conread position: 1-539
Cow position: chr10:46195046-46195595 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 234

Conread position: 1-547
Cow position: chr10:9798953-9798382 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 154

Conread position: 1-547
Cow position: chr10:34673156-34673710 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 206

Conread position: 1-552
Cow position: chr10:24222922-24222356 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 332

Conread position: 1-558
Cow position: chr10:51558965-51559539 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 333

Conread position: 1-565
Cow position: chr10:23877375-23876794 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 331

Conread position: 1-565
Cow position: chr10:33933759-33933180 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 329

Conread position: 1-573
Cow position: chr10:6253244-6252647 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 70

Conread position: 1-574
Cow position: chr10:32282579-32283170 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 334

Conread position: 1-574
Cow position: chr10:52277979-52278565 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 116

Conread position: 2-468
Cow position: chr10:50038580-50039060 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 115

Conread position: 2-547
Cow position: chr10:9287318-9287878 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 226

Conread position: 2-559
Cow position: chr10:29815833-29816412 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 339

Conread position: 2-563
Cow position: chr10:15867503-15868062 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 87

Conread position: 3-468
Cow position: chr10:24743531-24744012 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 332

Conread position: 3-565
Cow position: chr10:33665093-33665669 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 333

Conread position: 3-572
Cow position: chr10:38724922-38725498 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 50

Conread position: 3-574
Cow position: chr10:25341841-25342430 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 224

Conread position: 4-552
Cow position: chr10:50110642-50110088 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 86

Conread position: 4-565
Cow position: chr10:42347169-42346596 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 242

Conread position: 5-558
Cow position: chr10:63955061-63955619 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 192

Conread position: 28-552
Cow position: chr10:58599348-58598808 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 14

Conread position: 34-463
Cow position: chr10:30106780-30106340 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 8

Conread position: 35-539
Cow position: chr10:24308610-24308099 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 297

Conread position: 37-574
Cow position: chr10:10573138-10573691 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 131

Conread position: 41-574
Cow position: chr10:10047976-10048519 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 51

Conread position: 42-558
Cow position: chr10:30745693-30746223 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 24

Conread position: 42-562
Cow position: chr10:12393282-12392775 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 39

Conread position: 45-554
Cow position: chr10:58607399-58607924 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 126

Conread position: 48-558
Cow position: chr10:33215110-33215619 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 121

Conread position: 52-465
Cow position: chr10:24751694-24752120 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 13

Conread position: 53-552
Cow position: chr10:23328693-23328181 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 282

Conread position: 60-572
Cow position: chr10:46801690-46801168 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 112

Conread position: 66-552
Cow position: chr10:10134297-10134794 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 110

Conread position: 66-574
Cow position: chr10:6489198-6489704 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 260

Conread position: 91-552
Cow position: chr10:48270436-48269958 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 241

Conread position: 131-436
Cow position: chr10:55011458-55011776 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 226
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 85, 206

Conread position: 131-555
Cow position: chr10:58066750-58066315 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 198

Conread position: 131-573
Cow position: chr10:30359916-30360367 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 112

Conread position: 133-438
Cow position: chr10:34299874-34300184 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 235
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 83, 112

Conread position: 137-490
Cow position: chr10:9580058-9579699 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 263
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 18, 52

Conread position: 138-435
Cow position: chr10:32833720-32834040 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 230
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 45, 0

Conread position: 138-437
Cow position: chr10:53357029-53357334 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 230
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 78, 16

Conread position: 138-563
Cow position: chr10:50608947-50609365 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 33

Conread position: 146-572
Cow position: chr10:62285950-62286387 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 35

Conread position: 149-554
Cow position: chr10:37311733-37311319 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 183

Conread position: 151-574
Cow position: chr10:25224-25667 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 177

Conread position: 158-451
Cow position: chr10:30370783-30370483 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 217
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 58, 70

Conread position: 160-455
Cow position: chr10:55098306-55097992 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 221
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 56, 182

Conread position: 162-498
Cow position: chr10:24755851-24756202 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 254
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 54, 92

Conread position: 185-574
Cow position: chr10:13050849-13050455 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 143

Conread position: 189-558
Cow position: chr10:44680963-44681340 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 138

Conread position: 199-552
Cow position: chr10:39386910-39387276 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 229

Conread position: 203-524
Cow position: chr10:22429501-22429173 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 196
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 59, 120

Conread position: 210-552
Cow position: chr10:48462874-48462522 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 123

Conread position: 214-468
Cow position: chr10:60355561-60355802 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 179
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 30, 0

Conread position: 214-535
Cow position: chr10:29339924-29339598 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 231
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 35, 230

Conread position: 214-555
Cow position: chr10:53336931-53336584 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 249
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 48, 110

Conread position: 214-571
Cow position: chr10:6529672-6530038 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 111

Conread position: 214-574
Cow position: chr10:13311199-13311570 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 126

Conread position: 214-574
Cow position: chr10:56094706-56095066 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 38

Conread position: 221-552
Cow position: chr10:29322361-29322697 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 105

Conread position: 225-558
Cow position: chr10:11247460-11247795 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 246
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 37, 100

Conread position: 259-544
Cow position: chr10:14189271-14189004 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 59

Conread position: 259-574
Cow position: chr10:32928292-32928605 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 216
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 86, 197

Conread position: 260-465
Cow position: chr10:45476458-45476656 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 149
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 51, 0

Conread position: 260-466
Cow position: chr10:46150105-46150306 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 154
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 83, 49

Conread position: 260-550
Cow position: chr10:46172438-46172160 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 200
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 81, 51

Conread position: 260-552
Cow position: chr10:65345928-65345635 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 66

Conread position: 260-554
Cow position: chr10:26577080-26577368 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 58

Conread position: 260-563
Cow position: chr10:5113118-5113413 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 53

Conread position: 260-565
Cow position: chr10:22567906-22567611 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 260-565
Cow position: chr10:35828920-35828621 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 260-565
Cow position: chr10:49935269-49935581 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 213
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 165, 49

Conread position: 260-574
Cow position: chr10:22509652-22509346 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 227
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 255, 48

Conread position: 260-574
Cow position: chr10:24744651-24744965 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 53

Conread position: 261-563
Cow position: chr10:50067990-50067694 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 211
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 48, 0

Conread position: 261-572
Cow position: chr10:9082844-9083135 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 221
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 50, 0

Conread position: 261-574
Cow position: chr10:19104650-19104338 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 48

Conread position: 264-445
Cow position: chr10:19093751-19093930 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 133
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 49, 0

Conread position: 264-542
Cow position: chr10:24972061-24971793 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 204
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 47, 55

Conread position: 264-560
Cow position: chr10:8403726-8404033 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 219
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 151, 0

Conread position: 264-574
Cow position: chr10:28569598-28569905 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 44

Conread position: 268-524
Cow position: chr10:24292787-24292531 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 188
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 39, 142

Conread position: 297-554
Cow position: chr10:24547820-24548076 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 0

Show alignments to all cow chromosomes.