Cow genome map

Conread name: rfcc33b_d9.y1

Conread position: 1-430
Cow position:
Alignm length: 457
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 205

Conread position: 1-465
Cow position:
Alignm length: 499
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 0

Conread position: 1-484
Cow position:
Alignm length: 507
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 331

Conread position: 1-484
Cow position:
Alignm length: 507
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 331

Conread position: 1-550
Cow position:
Alignm length: 570
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 220

Conread position: 1-552
Cow position:
Alignm length: 575
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 331

Conread position: 1-573
Cow position:
Alignm length: 592
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 485

Conread position: 1-574
Cow position:
Alignm length: 596
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 332

Conread position: 1-574
Cow position:
Alignm length: 599
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 218

Conread position: 2-307
Cow position:
Alignm length: 327
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 0

Conread position: 3-511
Cow position:
Alignm length: 535
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 164

Conread position: 4-475
Cow position:
Alignm length: 497
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 40

Conread position: 4-572
Cow position:
Alignm length: 597
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 81

Conread position: 10-571
Cow position:
Alignm length: 589
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 98

Conread position: 29-565
Cow position:
Alignm length: 559
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 186

Conread position: 34-552
Cow position:
Alignm length: 545
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 72

Conread position: 39-563
Cow position:
Alignm length: 551
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 118

Conread position: 40-574
Cow position:
Alignm length: 557
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 52

Conread position: 47-572
Cow position:
Alignm length: 547
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 77

Conread position: 60-451
Cow position:
Alignm length: 409
Alignm identity: 280
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 8, 268

Conread position: 64-455
Cow position:
Alignm length: 408
Alignm identity: 272
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 77, 152

Conread position: 71-547
Cow position:
Alignm length: 500
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 263

Conread position: 76-574
Cow position:
Alignm length: 537
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 263

Conread position: 82-554
Cow position:
Alignm length: 497
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 253

Conread position: 86-552
Cow position:
Alignm length: 490
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 246

Conread position: 87-552
Cow position:
Alignm length: 476
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 77

Conread position: 129-411
Cow position:
Alignm length: 300
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 195

Conread position: 131-490
Cow position:
Alignm length: 364
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 184

Conread position: 131-552
Cow position:
Alignm length: 439
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 195

Conread position: 131-563
Cow position:
Alignm length: 451
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 101

Conread position: 131-574
Cow position:
Alignm length: 457
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 113

Conread position: 133-574
Cow position:
Alignm length: 461
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 197

Conread position: 139-513
Cow position:
Alignm length: 391
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 188

Conread position: 141-444
Cow position:
Alignm length: 318
Alignm identity: 230
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 114, 59

Conread position: 141-570
Cow position:
Alignm length: 437
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 18

Conread position: 146-558
Cow position:
Alignm length: 429
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 181

Conread position: 151-552
Cow position:
Alignm length: 418
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 176

Conread position: 154-460
Cow position:
Alignm length: 322
Alignm identity: 228
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 55, 170

Conread position: 155-512
Cow position:
Alignm length: 375
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 171

Conread position: 155-552
Cow position:
Alignm length: 414
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 170

Conread position: 155-552
Cow position:
Alignm length: 414
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 170

Conread position: 156-563
Cow position:
Alignm length: 427
Alignm identity: 283
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 106, 48

Conread position: 157-574
Cow position:
Alignm length: 440
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 21

Conread position: 162-441
Cow position:
Alignm length: 296
Alignm identity: 212
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 54, 27

Conread position: 167-565
Cow position:
Alignm length: 412
Alignm identity: 272
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 12, 46

Conread position: 178-574
Cow position:
Alignm length: 414
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 152

Conread position: 183-552
Cow position:
Alignm length: 389
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 59

Conread position: 185-574
Cow position:
Alignm length: 419
Alignm identity: 290
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 26, 127

Conread position: 187-552
Cow position:
Alignm length: 386
Alignm identity: 268
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 29, 67

Conread position: 187-552
Cow position:
Alignm length: 386
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 138

Conread position: 189-555
Cow position:
Alignm length: 383
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 138

Conread position: 195-552
Cow position:
Alignm length: 374
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 130

Conread position: 210-552
Cow position:
Alignm length: 365
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 117

Conread position: 214-453
Cow position:
Alignm length: 255
Alignm identity: 184
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 14, 125

Conread position: 214-544
Cow position:
Alignm length: 347
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 108

Conread position: 214-574
Cow position:
Alignm length: 377
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 215-552
Cow position:
Alignm length: 352
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 110

Conread position: 215-562
Cow position:
Alignm length: 363
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 111

Conread position: 216-450
Cow position:
Alignm length: 252
Alignm identity: 176
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 46, 133

Conread position: 216-552
Cow position:
Alignm length: 352
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 111

Conread position: 255-472
Cow position:
Alignm length: 220
Alignm identity: 155
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 85, 56

Conread position: 255-472
Cow position:
Alignm length: 220
Alignm identity: 158
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 85, 56

Conread position: 260-455
Cow position:
Alignm length: 197
Alignm identity: 139
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 184, 51

Conread position: 260-521
Cow position:
Alignm length: 275
Alignm identity: 197
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 66, 0

Conread position: 260-544
Cow position:
Alignm length: 285
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 260-552
Cow position:
Alignm length: 293
Alignm identity: 207
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 49, 0

Conread position: 260-558
Cow position:
Alignm length: 304
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 66

Conread position: 260-573
Cow position:
Alignm length: 321
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 53

Conread position: 260-574
Cow position:
Alignm length: 317
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 58

Conread position: 260-574
Cow position:
Alignm length: 315
Alignm identity: 216
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 51, 0

Conread position: 260-574
Cow position:
Alignm length: 315
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 261-552
Cow position:
Alignm length: 292
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 263-465
Cow position:
Alignm length: 203
Alignm identity: 148
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 46, 0

Conread position: 264-444
Cow position:
Alignm length: 181
Alignm identity: 128
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 47, 0

Conread position: 264-543
Cow position:
Alignm length: 287
Alignm identity: 196
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 106, 52

Conread position: 264-554
Cow position:
Alignm length: 293
Alignm identity: 209
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 45, 62

Conread position: 264-574
Cow position:
Alignm length: 311
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 264-574
Cow position:
Alignm length: 311
Alignm identity: 210
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 47, 0

Conread position: 265-552
Cow position:
Alignm length: 288
Alignm identity: 205
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 44, 0

Conread position: 277-500
Cow position:
Alignm length: 224
Alignm identity: 153
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 154, 0

Conread position: 460-574
Cow position:
Alignm length: 115
Alignm identity: 92
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 23, 0

Show alignments to all cow chromosomes.