Cow genome map
| Conread name: | rfcc33b_d9.y1 |
| Conread position: | 1-430 |
| Cow position: | chr11:14469704-14470150 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 205 |
| Conread position: | 1-465 |
| Cow position: | chr11:56916520-56916022 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 1-484 |
| Cow position: | chr11:61431534-61431034 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 331 |
| Conread position: | 1-484 |
| Cow position: | chr11:67920139-67919640 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 331 |
| Conread position: | 1-550 |
| Cow position: | chr11:42358383-42358944 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 220 |
| Conread position: | 1-552 |
| Cow position: | chr11:38819295-38818727 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 331 |
| Conread position: | 1-573 |
| Cow position: | chr11:2309129-2309713 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 485 |
| Conread position: | 1-574 |
| Cow position: | chr11:5273371-5272783 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 332 |
| Conread position: | 1-574 |
| Cow position: | chr11:84774366-84774954 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 218 |
| Conread position: | 2-307 |
| Cow position: | chr11:20601515-20601841 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 3-511 |
| Cow position: | chr11:44915481-44914955 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 164 |
| Conread position: | 4-475 |
| Cow position: | chr11:62238743-62239231 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 40 |
| Conread position: | 4-572 |
| Cow position: | chr11:56752121-56751546 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 81 |
| Conread position: | 10-571 |
| Cow position: | chr11:30164774-30165347 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 98 |
| Conread position: | 29-565 |
| Cow position: | chr11:42292551-42292002 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 186 |
| Conread position: | 34-552 |
| Cow position: | chr11:86721242-86720717 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 72 |
| Conread position: | 39-563 |
| Cow position: | chr11:12762957-12762417 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 118 |
| Conread position: | 40-574 |
| Cow position: | chr11:48271506-48272038 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 52 |
| Conread position: | 47-572 |
| Cow position: | chr11:6153718-6154253 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 77 |
| Conread position: | 60-451 |
| Cow position: | chr11:72291055-72291457 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 280 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 8, 268 |
| Conread position: | 64-455 |
| Cow position: | chr11:84532015-84531609 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 272 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 77, 152 |
| Conread position: | 71-547 |
| Cow position: | chr11:19787473-19787962 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 263 |
| Conread position: | 76-574 |
| Cow position: | chr11:75480709-75480183 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 263 |
| Conread position: | 82-554 |
| Cow position: | chr11:4383964-4384448 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 253 |
| Conread position: | 86-552 |
| Cow position: | chr11:43537202-43536719 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 246 |
| Conread position: | 87-552 |
| Cow position: | chr11:40819273-40818817 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 77 |
| Conread position: | 129-411 |
| Cow position: | chr11:84723719-84724016 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 195 |
| Conread position: | 131-490 |
| Cow position: | chr11:26118659-26118303 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 184 |
| Conread position: | 131-552 |
| Cow position: | chr11:39078721-39078289 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 195 |
| Conread position: | 131-563 |
| Cow position: | chr11:35579647-35580087 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 101 |
| Conread position: | 131-574 |
| Cow position: | chr11:7589587-7590034 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 113 |
| Conread position: | 133-574 |
| Cow position: | chr11:36986358-36986805 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 197 |
| Conread position: | 139-513 |
| Cow position: | chr11:18509610-18509226 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 188 |
| Conread position: | 141-444 |
| Cow position: | chr11:70639169-70639474 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 230 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 114, 59 |
| Conread position: | 141-570 |
| Cow position: | chr11:62377025-62376598 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 18 |
| Conread position: | 146-558 |
| Cow position: | chr11:43509978-43509556 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 181 |
| Conread position: | 151-552 |
| Cow position: | chr11:68571261-68570851 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 176 |
| Conread position: | 154-460 |
| Cow position: | chr11:75354741-75355056 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 228 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 55, 170 |
| Conread position: | 155-512 |
| Cow position: | chr11:21832552-21832185 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 171 |
| Conread position: | 155-552 |
| Cow position: | chr11:14287149-14287556 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 170 |
| Conread position: | 155-552 |
| Cow position: | chr11:14297142-14297549 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 170 |
| Conread position: | 156-563 |
| Cow position: | chr11:63157487-63157080 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 283 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 106, 48 |
| Conread position: | 157-574 |
| Cow position: | chr11:15286204-15285774 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 21 |
| Conread position: | 162-441 |
| Cow position: | chr11:10149983-10149695 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 54, 27 |
| Conread position: | 167-565 |
| Cow position: | chr11:21499043-21499452 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 272 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 12, 46 |
| Conread position: | 178-574 |
| Cow position: | chr11:55116910-55117316 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 152 |
| Conread position: | 183-552 |
| Cow position: | chr11:54134806-54134426 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 59 |
| Conread position: | 185-574 |
| Cow position: | chr11:74316145-74316553 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 290 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 26, 127 |
| Conread position: | 187-552 |
| Cow position: | chr11:62151432-62151060 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 268 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 29, 67 |
| Conread position: | 187-552 |
| Cow position: | chr11:76114100-76114477 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 138 |
| Conread position: | 189-555 |
| Cow position: | chr11:40467673-40467299 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 138 |
| Conread position: | 195-552 |
| Cow position: | chr11:41164226-41163859 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 130 |
| Conread position: | 210-552 |
| Cow position: | chr11:30707969-30708324 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 117 |
| Conread position: | 214-453 |
| Cow position: | chr11:55761263-55761512 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 14, 125 |
| Conread position: | 214-544 |
| Cow position: | chr11:19890360-19890695 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 108 |
| Conread position: | 214-574 |
| Cow position: | chr11:8841273-8840897 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 215-552 |
| Cow position: | chr11:63469364-63469704 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 110 |
| Conread position: | 215-562 |
| Cow position: | chr11:64334333-64334688 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 111 |
| Conread position: | 216-450 |
| Cow position: | chr11:15999867-16000116 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 46, 133 |
| Conread position: | 216-552 |
| Cow position: | chr11:8827261-8827601 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 111 |
| Conread position: | 255-472 |
| Cow position: | chr11:13067986-13067777 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 85, 56 |
| Conread position: | 255-472 |
| Cow position: | chr11:13162011-13162220 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 85, 56 |
| Conread position: | 260-455 |
| Cow position: | chr11:17514629-17514819 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 184, 51 |
| Conread position: | 260-521 |
| Cow position: | chr11:34112791-34113065 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 260-544 |
| Cow position: | chr11:27248031-27248305 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 260-552 |
| Cow position: | chr11:57253809-57254095 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 207 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 260-558 |
| Cow position: | chr11:58587872-58588172 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 66 |
| Conread position: | 260-573 |
| Cow position: | chr11:16251720-16251407 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 53 |
| Conread position: | 260-574 |
| Cow position: | chr11:7925056-7924746 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 58 |
| Conread position: | 260-574 |
| Cow position: | chr11:59902434-59902731 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 216 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 260-574 |
| Cow position: | chr11:62979013-62979321 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 261-552 |
| Cow position: | chr11:17969039-17968754 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 263-465 |
| Cow position: | chr11:25565484-25565680 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 264-444 |
| Cow position: | chr11:25164943-25165117 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 264-543 |
| Cow position: | chr11:63909887-63910161 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 106, 52 |
| Conread position: | 264-554 |
| Cow position: | chr11:7683368-7683653 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 209 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 45, 62 |
| Conread position: | 264-574 |
| Cow position: | chr11:6644763-6645063 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 264-574 |
| Cow position: | chr11:52516151-52516455 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 265-552 |
| Cow position: | chr11:15560220-15559939 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 205 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 277-500 |
| Cow position: | chr11:2093636-2093417 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 154, 0 |
| Conread position: | 460-574 |
| Cow position: | chr11:24937392-24937505 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 23, 0 |
Show alignments to all cow chromosomes.