Cow genome map
| Conread name: | rfcc33b_d9.y1 |
| Conread position: | 1-466 |
| Cow position: | chr12:28708138-28707659 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 41 |
| Conread position: | 1-563 |
| Cow position: | chr12:5800266-5800847 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 331 |
| Conread position: | 1-565 |
| Cow position: | chr12:1405933-1406519 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 331 |
| Conread position: | 1-565 |
| Cow position: | chr12:21250828-21250248 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 205 |
| Conread position: | 1-574 |
| Cow position: | chr12:6404301-6403707 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 331 |
| Conread position: | 2-565 |
| Cow position: | chr12:19868717-19869286 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 70 |
| Conread position: | 2-574 |
| Cow position: | chr12:35367867-35368466 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 39 |
| Conread position: | 3-542 |
| Cow position: | chr12:7885385-7884869 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 171 |
| Conread position: | 3-574 |
| Cow position: | chr12:19040379-19039791 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 11 |
| Conread position: | 15-574 |
| Cow position: | chr12:21075320-21075887 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 40 |
| Conread position: | 31-552 |
| Cow position: | chr12:4593359-4593899 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 137 |
| Conread position: | 64-554 |
| Cow position: | chr12:36568752-36568253 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 46 |
| Conread position: | 72-572 |
| Cow position: | chr12:37770187-37770697 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 65 |
| Conread position: | 85-552 |
| Cow position: | chr12:19865565-19866044 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 154 |
| Conread position: | 96-555 |
| Cow position: | chr12:37514891-37514425 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 227 |
| Conread position: | 131-539 |
| Cow position: | chr12:3038889-3039303 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 28 |
| Conread position: | 131-552 |
| Cow position: | chr12:43470589-43471020 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 194 |
| Conread position: | 132-558 |
| Cow position: | chr12:12754253-12753818 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 193 |
| Conread position: | 137-552 |
| Cow position: | chr12:24755646-24755223 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 189 |
| Conread position: | 140-552 |
| Cow position: | chr12:37122893-37123314 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 188 |
| Conread position: | 159-574 |
| Cow position: | chr12:18421526-18421103 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 76 |
| Conread position: | 165-539 |
| Cow position: | chr12:31430160-31429772 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 7 |
| Conread position: | 165-554 |
| Cow position: | chr12:7398435-7398842 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 273 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 51, 160 |
| Conread position: | 165-574 |
| Cow position: | chr12:18553665-18554093 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 162 |
| Conread position: | 169-574 |
| Cow position: | chr12:27176245-27175846 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 161 |
| Conread position: | 170-542 |
| Cow position: | chr12:2253103-2253485 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 155 |
| Conread position: | 177-555 |
| Cow position: | chr12:36118389-36118775 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 150 |
| Conread position: | 189-558 |
| Cow position: | chr12:39356743-39357126 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 266 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 27, 141 |
| Conread position: | 190-552 |
| Cow position: | chr12:46332808-46333162 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 261 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 26, 14 |
| Conread position: | 192-550 |
| Cow position: | chr12:17472783-17472420 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 135 |
| Conread position: | 205-555 |
| Cow position: | chr12:38111178-38111534 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 119 |
| Conread position: | 208-552 |
| Cow position: | chr12:31228042-31228376 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 127, 117 |
| Conread position: | 214-552 |
| Cow position: | chr12:2228715-2228369 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 109 |
| Conread position: | 214-565 |
| Cow position: | chr12:2821316-2821675 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 109 |
| Conread position: | 217-562 |
| Cow position: | chr12:29066943-29067282 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 92, 25 |
| Conread position: | 218-439 |
| Cow position: | chr12:31947655-31947890 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 43, 108 |
| Conread position: | 260-453 |
| Cow position: | chr12:28650431-28650624 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 260-503 |
| Cow position: | chr12:5658582-5658344 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 92, 51 |
| Conread position: | 260-561 |
| Cow position: | chr12:19691722-19691425 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 58 |
| Conread position: | 260-574 |
| Cow position: | chr12:27563867-27563563 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 0 |
| Conread position: | 261-451 |
| Cow position: | chr12:5713965-5714148 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 261-552 |
| Cow position: | chr12:35311157-35310871 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 52 |
| Conread position: | 261-572 |
| Cow position: | chr12:40806913-40807218 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 261-574 |
| Cow position: | chr12:38678209-38678522 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 51 |
| Conread position: | 264-468 |
| Cow position: | chr12:40163061-40163264 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 75, 49 |
| Conread position: | 264-538 |
| Cow position: | chr12:7977572-7977835 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 207 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 6, 48 |
| Conread position: | 264-555 |
| Cow position: | chr12:42602716-42602435 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 265-552 |
| Cow position: | chr12:2711009-2711294 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 46 |
| Conread position: | 266-558 |
| Cow position: | chr12:8673390-8673102 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 69, 45 |
| Conread position: | 275-547 |
| Cow position: | chr12:17716604-17716880 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 152, 0 |
| Conread position: | 278-552 |
| Cow position: | chr12:33112062-33112330 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 199 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 281-465 |
| Cow position: | chr12:12178082-12178263 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 281-542 |
| Cow position: | chr12:30918967-30919224 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 164, 130 |
| Conread position: | 296-563 |
| Cow position: | chr12:21828631-21828897 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 148, 158 |
Show alignments to all cow chromosomes.