Cow genome map
| Conread name: | rfcc33b_d9.y1 |
| Conread position: | 1-438 |
| Cow position: | chr13:3419638-3419207 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 295 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 168, 159 |
| Conread position: | 1-438 |
| Cow position: | chr13:58742432-58742875 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 75 |
| Conread position: | 1-465 |
| Cow position: | chr13:14302709-14302228 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 333 |
| Conread position: | 1-530 |
| Cow position: | chr13:12618394-12618919 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 62 |
| Conread position: | 1-554 |
| Cow position: | chr13:186214-185651 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 81 |
| Conread position: | 1-554 |
| Cow position: | chr13:19426000-19426555 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 29 |
| Conread position: | 1-558 |
| Cow position: | chr13:51902328-51901751 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 165 |
| Conread position: | 1-560 |
| Cow position: | chr13:1155001-1155571 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 24 |
| Conread position: | 1-565 |
| Cow position: | chr13:33522678-33522102 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 329 |
| Conread position: | 1-574 |
| Cow position: | chr13:32754528-32755112 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 333 |
| Conread position: | 2-552 |
| Cow position: | chr13:26098853-26098290 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 40 |
| Conread position: | 2-574 |
| Cow position: | chr13:46182483-46181911 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 199 |
| Conread position: | 3-519 |
| Cow position: | chr13:31638507-31638004 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 115 |
| Conread position: | 3-539 |
| Cow position: | chr13:21107847-21107287 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 173 |
| Conread position: | 3-552 |
| Cow position: | chr13:22085049-22085606 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 247 |
| Conread position: | 3-555 |
| Cow position: | chr13:1012039-1011474 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 176 |
| Conread position: | 4-549 |
| Cow position: | chr13:21402085-21402647 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 163 |
| Conread position: | 4-554 |
| Cow position: | chr13:16015533-16014950 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 340 |
| Conread position: | 20-552 |
| Cow position: | chr13:14551834-14551285 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 312 |
| Conread position: | 23-552 |
| Cow position: | chr13:11486336-11486882 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 309 |
| Conread position: | 45-555 |
| Cow position: | chr13:971222-971756 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 302 |
| Conread position: | 49-552 |
| Cow position: | chr13:52009926-52010440 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 131 |
| Conread position: | 53-491 |
| Cow position: | chr13:4420972-4420516 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 284 |
| Conread position: | 62-574 |
| Cow position: | chr13:15873105-15872572 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 18 |
| Conread position: | 65-574 |
| Cow position: | chr13:60690069-60690599 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 22 |
| Conread position: | 69-562 |
| Cow position: | chr13:21235045-21235550 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 266 |
| Conread position: | 71-451 |
| Cow position: | chr13:9734593-9734191 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 285 |
| Conread position: | 93-447 |
| Cow position: | chr13:22117214-22116853 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 263 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 123, 29 |
| Conread position: | 131-424 |
| Cow position: | chr13:45072849-45073148 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 224 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 100, 56 |
| Conread position: | 131-447 |
| Cow position: | chr13:24156446-24156119 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 200 |
| Conread position: | 131-572 |
| Cow position: | chr13:55371585-55372036 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 196 |
| Conread position: | 131-574 |
| Cow position: | chr13:32825837-32826284 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 87 |
| Conread position: | 148-565 |
| Cow position: | chr13:33876212-33875794 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 12 |
| Conread position: | 151-574 |
| Cow position: | chr13:13261569-13261131 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 172 |
| Conread position: | 154-539 |
| Cow position: | chr13:20440047-20440442 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 176 |
| Conread position: | 154-574 |
| Cow position: | chr13:37483709-37484147 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 59 |
| Conread position: | 160-456 |
| Cow position: | chr13:48164931-48165236 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 49, 167 |
| Conread position: | 164-574 |
| Cow position: | chr13:52585481-52585897 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 55 |
| Conread position: | 170-542 |
| Cow position: | chr13:24109620-24109237 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 42, 157 |
| Conread position: | 182-565 |
| Cow position: | chr13:52922626-52922222 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 294 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 34, 142 |
| Conread position: | 188-552 |
| Cow position: | chr13:41254145-41253764 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 268 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 28, 137 |
| Conread position: | 189-444 |
| Cow position: | chr13:53070023-53069752 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 27, 5 |
| Conread position: | 198-574 |
| Cow position: | chr13:311941-311557 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 123 |
| Conread position: | 212-552 |
| Cow position: | chr13:21255859-21256208 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 230 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 50, 124 |
| Conread position: | 223-574 |
| Cow position: | chr13:40943725-40943371 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 99 |
| Conread position: | 224-555 |
| Cow position: | chr13:51527966-51528305 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 99 |
| Conread position: | 231-444 |
| Cow position: | chr13:17970537-17970748 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 249-451 |
| Cow position: | chr13:11821756-11821562 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 259-471 |
| Cow position: | chr13:5261918-5262122 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 100, 52 |
| Conread position: | 259-565 |
| Cow position: | chr13:20863590-20863886 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 227 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 44, 61 |
| Conread position: | 260-411 |
| Cow position: | chr13:33816299-33816155 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 260-442 |
| Cow position: | chr13:48038557-48038381 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 260-443 |
| Cow position: | chr13:24099556-24099733 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 260-444 |
| Cow position: | chr13:57444622-57444802 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 260-462 |
| Cow position: | chr13:16025165-16024963 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 137, 48 |
| Conread position: | 260-465 |
| Cow position: | chr13:5278542-5278741 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 260-484 |
| Cow position: | chr13:5621835-5621617 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 170 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 260-523 |
| Cow position: | chr13:26822570-26822303 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 74 |
| Conread position: | 260-547 |
| Cow position: | chr13:36770991-36771274 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 51 |
| Conread position: | 260-552 |
| Cow position: | chr13:5175998-5175715 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 260-553 |
| Cow position: | chr13:62517770-62518063 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 210 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 94, 54 |
| Conread position: | 260-554 |
| Cow position: | chr13:20377911-20378195 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 51 |
| Conread position: | 260-562 |
| Cow position: | chr13:16092235-16091941 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 260-565 |
| Cow position: | chr13:3701862-3701567 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 218 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 260-572 |
| Cow position: | chr13:25062849-25062535 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 51 |
| Conread position: | 260-574 |
| Cow position: | chr13:12682110-12682418 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 222 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 75, 46 |
| Conread position: | 260-574 |
| Cow position: | chr13:15446473-15446172 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 223 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 264-455 |
| Cow position: | chr13:14063071-14063256 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 264-539 |
| Cow position: | chr13:7663006-7663271 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 265-552 |
| Cow position: | chr13:57898628-57898913 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 161, 0 |
| Conread position: | 266-574 |
| Cow position: | chr13:35761144-35761441 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 219 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 268-574 |
| Cow position: | chr13:61170302-61170592 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 269-572 |
| Cow position: | chr13:50689970-50690267 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 290-560 |
| Cow position: | chr13:60436471-60436746 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 0 |
Show alignments to all cow chromosomes.